IslandPathversion 1.0

IslandPath Analysis: Ralstonia pickettii 12J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.67 STD DEV: 3.41
Ralstonia pickettii 12J chromosome 2, complete sequence - 1..1302238
1153 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
136	 66.67	0	152394..152789	+	131	187926094	-	Rpic_3905	-	Carboxymuconolactone decarboxylase
137	 63.01	0	152811..153029	+	72	187926095	-	Rpic_3906	-	hypothetical protein
138	 63.70	0	153042..153851	+	269	187926096	-	Rpic_3907	-	alpha/beta hydrolase fold
139	 62.70	0	153991..154494	-	167	187926097	-	Rpic_3908	-	thioesterase superfamily protein
140	 63.81	0	154540..155064	+	174	187926098	-	Rpic_3909	-	hypothetical protein
141	 69.01	+1	155161..155502	+	113	187926099	-	Rpic_3910	-	hypothetical protein
142	 65.25	0	155512..156924	+	470	187926100	-	Rpic_3911	-	outer membrane efflux protein
143	 65.36	0	156927..158225	+	432	187926101	-	Rpic_3912	-	multicopper oxidase type 3
144	 68.92	+1	158267..158755	+	162	187926102	-	Rpic_3913	-	blue (type 1) copper domain protein
145	 63.61	0	158791..159117	+	108	187926103	-	Rpic_3914	-	hypothetical protein
146	 49.21	-2	159508..160515	+	335	187926104	-	Rpic_3915	-	lipopolysaccharide-modifying protein
147	 67.55	0	160642..161433	+	263	187926105	-	Rpic_3916	-	Phytanoyl-CoA dioxygenase
148	 58.56	-1	161531..161752	+	73	187926106	-	Rpic_3917	-	hypothetical protein
149	 66.89	0	161976..162416	+	146	187926107	-	Rpic_3918	-	hypothetical protein
150	 65.49	0	162436..163962	+	508	187926108	-	Rpic_3919	-	Carotenoid oxygenase
151	 64.52	0	163975..165468	-	497	187926109	-	Rpic_3920	-	peptidase dimerisation domain protein
152	 67.76	0	165677..166594	+	305	187926110	-	Rpic_3921	-	transcriptional regulator, LysR family
153	 66.06	0	166611..168092	-	493	187926111	-	Rpic_3922	-	AMP nucleosidase
154	 67.57	0	168140..168913	-	257	187926112	-	Rpic_3923	-	polar amino acid ABC transporter, inner membrane subunit
155	 67.53	0	168910..169602	-	230	187926113	-	Rpic_3924	-	polar amino acid ABC transporter, inner membrane subunit
156	 64.30	0	169674..170561	-	295	187926114	-	Rpic_3925	-	extracellular solute-binding protein family 3
157	 60.36	-1	172660..173166	+	168	187926115	-	Rpic_3928	-	hypothetical protein
158	 64.36	0	173186..174571	-	461	187926116	-	Rpic_3929	-	integral membrane sensor signal transduction histidine kinase
159	 67.73	0	174797..175549	-	250	187926117	-	Rpic_3930	-	Methyltransferase type 11
160	 69.16	+1	175668..176588	-	306	187926118	-	Rpic_3931	-	amidohydrolase 2
161	 66.35	0	176644..177891	-	415	187926119	-	Rpic_3932	-	major facilitator superfamily MFS_1
162	 67.76	0	178027..180849	-	940	187926120	-	Rpic_3933	-	malto-oligosyltrehalose synthase
163	 69.12	+1	180846..183128	-	760	187926121	-	Rpic_3934	-	4-alpha-glucanotransferase
164	 67.21	0	183167..185008	-	613	187926122	-	Rpic_3935	-	malto-oligosyltrehalose trehalohydrolase
165	 66.32	0	185005..187305	-	766	187926123	-	Rpic_3936	-	glycogen debranching enzyme GlgX
166	 66.88	0	187897..190203	-	768	187926124	-	Rpic_3937	-	1,4-alpha-glucan branching enzyme
167	 66.12	0	190200..193694	-	1164	187926125	-	Rpic_3938	-	trehalose synthase
168	 67.17	0	193691..197281	-	1196	187926126	-	Rpic_3939	-	alpha amylase catalytic region
169	 67.59	0	197313..198944	-	543	187926127	-	Rpic_3940	-	glycogen/starch synthase, ADP-glucose type
170	 60.28	-1	199347..199910	+	187	187926128	-	Rpic_3941	-	peroxiredoxin
171	 65.71	0	200036..201610	+	524	187926129	-	Rpic_3942	-	alkyl hydroperoxide reductase, F subunit
172	 68.58	+1	201688..202575	-	295	187926130	-	Rpic_3943	-	transcriptional regulator, LysR family
173	 64.69	0	203210..203665	+	151	187926131	-	Rpic_3944	-	ferric uptake regulator, Fur family
174	 63.89	0	203762..204013	+	83	187926132	-	Rpic_3945	-	hypothetical protein
175	 60.13	-1	204023..204328	-	101	187926133	-	Rpic_3946	-	hypothetical protein
176	 69.16	+1	204435..204755	-	106	187926134	-	Rpic_3947	-	putative transmembrane protein
177	 65.49	0	204752..206617	-	621	187926135	-	Rpic_3948	-	ferrous iron transport protein B
178	 69.90	+1	206664..206972	-	102	187926136	-	Rpic_3949	-	FeoA family protein
179	 65.34	0	207660..211211	+	1183	187926137	-	Rpic_3950	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
180	 66.42	0	211233..212822	-	529	187926138	-	Rpic_3951	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
181	 70.63	+1	213039..213290	+	83	187926139	-	Rpic_3952	-	hypothetical protein
182	 68.12	+1	213304..214131	-	275	187926140	-	Rpic_3953	-	FAD-binding 9 siderophore-interacting domain protein
183	 63.64	0	214232..214891	-	219	187926141	-	Rpic_3954	-	transcriptional regulator, PadR-like family
184	 68.22	+1	215004..215519	-	171	187926142	-	Rpic_3955	-	transcriptional regulator, MarR family
185	 67.07	0	215598..216095	+	165	187926143	-	Rpic_3956	-	alkylhydroperoxidase like protein, AhpD family
186	 64.67	0	216092..216541	+	149	187926144	-	Rpic_3957	-	GCN5-related N-acetyltransferase
187	 64.91	0	216538..217164	+	208	187926145	-	Rpic_3958	-	NAD(P)H dehydrogenase (quinone)
188	 64.04	0	217230..217877	-	215	187926146	-	Rpic_3959	-	pyrrolidone-carboxylate peptidase
189	 65.24	0	217956..218375	-	139	187926147	-	Rpic_3960	-	transcriptional regulator, MarR family
190	 69.23	+1	218461..220059	-	532	187926148	-	Rpic_3961	-	hypothetical protein
191	 64.83	0	220251..221066	+	271	187926149	-	Rpic_3962	-	Beta-lactamase
192	 68.02	0	221233..221676	+	147	187926150	-	Rpic_3963	-	hypothetical protein
193	 65.55	0	221728..223341	-	537	187926151	-	Rpic_3964	-	periplasmic glucan biosynthesis protein MdoG
194	 65.53	0	223539..224681	+	380	187926152	-	Rpic_3965	-	beta-lactamase
195	 65.83	0	224712..225191	-	159	187926153	-	Rpic_3966	-	Domain of unknown function DUF1854
196	 65.41	0	225205..227511	-	768	187926154	-	Rpic_3967	-	ABC transporter related
197	 65.88	0	227801..230461	+	886	187926155	-	Rpic_3968	-	cyanophycin synthetase
198	 67.02	0	230515..233082	+	855	187926156	-	Rpic_3969	-	cyanophycin synthetase
199	 63.75	0	233728..234309	+	193	187926157	-	Rpic_3970	-	flavin reductase domain protein FMN-binding
200	 62.77	0	234306..234818	+	170	187926158	-	Rpic_3971	-	GCN5-related N-acetyltransferase
201	 65.29	0	234815..235831	-	338	187926159	-	Rpic_3972	-	transcriptional regulator, AraC family
202	 66.93	0	235997..237130	+	377	187926160	-	Rpic_3973	-	acyl-CoA dehydrogenase domain protein
203	 65.55	0	237192..238886	+	564	187926161	-	Rpic_3974	-	AMP-dependent synthetase and ligase
204	 64.79	0	238959..240506	+	515	187926162	-	Rpic_3975	-	methylmalonate-semialdehyde dehydrogenase
205	 65.32	0	240526..241419	+	297	187926163	-	Rpic_3976	-	3-hydroxyisobutyrate dehydrogenase
206	 66.54	0	241419..242216	+	265	187926164	-	Rpic_3977	-	Enoyl-CoA hydratase/isomerase
207	 67.01	0	242213..243364	+	383	187926165	-	Rpic_3978	-	Enoyl-CoA hydratase/isomerase
208	 63.79	0	243716..245485	+	589	187926166	-	Rpic_3979	-	hypothetical protein
209	 66.67	0	245513..247006	-	497	187926167	-	Rpic_3980	-	AMP-dependent synthetase and ligase
210	 65.81	0	247489..248769	+	426	187926168	-	Rpic_3981	-	Chloride channel core
211	 66.10	0	248808..249518	-	236	187926169	-	Rpic_3982	-	transcriptional regulator, IclR family
212	 66.95	0	249688..250386	+	232	187926170	-	Rpic_3983	-	Dimethylmenaquinone methyltransferase
213	 66.14	0	250386..251336	+	316	187926171	-	Rpic_3984	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
214	 64.05	0	251336..252292	+	318	187926172	-	Rpic_3985	-	SMP-30/Gluconolaconase/LRE domain protein
215	 65.93	0	252355..253719	+	454	187926173	-	Rpic_3986	-	major facilitator superfamily MFS_1
216	 64.40	0	253796..255121	+	441	187926174	-	Rpic_3987	-	major facilitator superfamily MFS_1
217	 66.50	0	255157..255753	+	198	187926175	-	Rpic_3988	-	amidohydrolase 2
218	 65.12	0	255986..257926	-	646	187926176	-	Rpic_3989	-	peptidase S8 and S53 subtilisin kexin sedolisin
219	 66.86	0	258219..259235	-	338	187926177	-	Rpic_3990	-	transcriptional regulator, AraC family
220	 66.47	0	259323..260840	-	505	187926178	-	Rpic_3991	-	diguanylate cyclase
221	 68.72	+1	261135..261329	+	64	187926179	-	Rpic_3992	-	hypothetical protein
222	 68.07	0	261614..264247	+	877	187926180	-	Rpic_3993	-	protein of unknown function DUF470
223	 67.97	0	264244..266010	+	588	187926181	-	Rpic_3994	-	virulence factor family protein
224	 67.25	0	266070..267791	-	573	187926182	-	Rpic_3995	-	sulphate transporter
225	 71.01	+1	267871..268422	-	183	187926183	-	Rpic_3996	-	putative alanine-rich signal peptide protein
226	 69.26	+1	268632..269558	-	308	187926184	-	Rpic_3997	-	transcriptional regulator, MarR family
227	 65.62	0	269671..270432	+	253	187926185	-	Rpic_3998	-	short-chain dehydrogenase/reductase SDR
228	 65.89	0	270729..271370	+	213	187926186	-	Rpic_3999	-	YheO domain protein
229	 65.85	0	271367..272344	+	325	187926187	-	Rpic_4000	-	Pyridoxal-5'-phosphate-dependent protein beta subunit
230	 66.67	0	272341..272730	+	129	187926188	-	Rpic_4001	-	Endoribonuclease L-PSP
231	 64.97	0	272882..273763	+	293	187926189	-	Rpic_4002	-	type IV pilus assembly PilZ
232	 65.42	0	273768..274652	-	294	187926190	-	Rpic_4003	-	transcriptional regulator, LysR family
233	 60.27	-1	274768..275205	+	145	187926191	-	Rpic_4004	-	transmembrane pair domain protein
234	 68.85	+1	275320..275961	+	213	187926192	-	Rpic_4005	-	transcriptional regulator, LuxR family
235	 65.75	0	275979..276197	-	72	187926193	-	Rpic_4006	-	hypothetical protein
64.67	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.