IslandPathversion 1.0

IslandPath Analysis: Ralstonia pickettii 12J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.67 STD DEV: 3.41
Ralstonia pickettii 12J chromosome 2, complete sequence - 1..1302238
1153 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1054	 67.67	0	1190030..1191025	-	331	187927012	-	Rpic_4846	-	NAD-dependent epimerase/dehydratase
1055	 64.15	0	1191025..1192254	-	409	187927013	-	Rpic_4847	-	2-amino-3-ketobutyrate coenzyme A ligase
1056	 67.00	0	1192342..1192938	+	198	187927014	-	Rpic_4848	-	transcriptional regulator, XRE family
1057	 69.40	+1	1192944..1194296	-	450	187927015	-	Rpic_4849	-	MATE efflux family protein
1058	 65.45	0	1194561..1196291	+	576	187927016	-	Rpic_4850	-	amino acid permease-associated region
1059	 67.22	0	1196555..1197457	-	300	187927017	-	Rpic_4851	-	transcriptional regulator, LysR family
1060	 65.31	0	1197560..1198444	+	294	187927018	-	Rpic_4852	-	aldo/keto reductase
1061	 67.89	0	1198559..1198804	-	81	187927019	-	Rpic_4853	-	transcriptional regulator, MerR family
1062	 65.43	0	1199099..1200883	+	594	187927020	-	Rpic_4854	-	diguanylate cyclase/phosphodiesterase
1063	 63.42	0	1201424..1202842	+	472	187927021	-	Rpic_4855	-	coagulation factor 5/8 type domain protein
1064	 68.71	+1	1203015..1204682	+	555	187927022	-	Rpic_4856	-	hypothetical protein
1065	 68.44	+1	1204705..1205718	+	337	187927023	-	Rpic_4857	-	2-dehydropantoate 2-reductase
1066	 65.51	0	1205715..1206407	-	230	187927024	-	Rpic_4858	-	transcriptional regulator, Crp/Fnr family
1067	 64.72	0	1206572..1207084	-	170	187927025	-	Rpic_4859	-	hypothetical protein
1068	 68.83	+1	1207113..1207712	+	199	187927026	-	Rpic_4860	-	chorismate mutase
1069	 66.33	0	1207797..1209275	-	492	187927027	-	Rpic_4861	-	protease Do
1070	 71.45	+1	1209422..1210738	-	438	187927028	-	Rpic_4862	-	integral membrane sensor signal transduction histidine kinase
1071	 67.62	0	1210742..1211476	-	244	187927029	-	Rpic_4863	-	two component transcriptional regulator, winged helix family
1072	 69.63	+1	1211599..1212441	+	280	187927030	-	Rpic_4864	-	transcriptional regulator, RpiR family
1073	 67.61	0	1212464..1213519	-	351	187927031	-	Rpic_4865	-	glucokinase
1074	 69.79	+1	1213500..1214204	-	234	187927032	-	Rpic_4866	-	6-phosphogluconolactonase
1075	 65.85	0	1214204..1215673	-	489	187927033	-	Rpic_4867	-	glucose-6-phosphate 1-dehydrogenase
1076	 67.92	0	1215981..1217819	+	612	187927034	-	Rpic_4868	-	6-phosphogluconate dehydratase
1077	 64.04	0	1217836..1218291	-	151	187927035	-	Rpic_4869	-	UspA domain protein
1078	 68.38	+1	1218425..1218892	+	155	187927036	-	Rpic_4870	-	hypothetical protein
1079	 63.74	0	1218992..1219504	+	170	187927037	-	Rpic_4871	-	hypothetical protein
1080	 65.62	0	1219733..1220881	+	382	187927038	-	Rpic_4872	-	cytochrome c oxidase subunit II
1081	 63.09	0	1220894..1222654	+	586	187927039	-	Rpic_4873	-	cytochrome c oxidase, subunit I
1082	 67.00	0	1222651..1223259	+	202	187927040	-	Rpic_4874	-	cytochrome c oxidase subunit III
1083	 63.92	0	1223256..1223948	+	230	187927041	-	Rpic_4875	-	cytochrome c oxidase subunit III
1084	 62.07	0	1223956..1224303	+	115	187927042	-	Rpic_4876	-	hypothetical protein
1085	 66.75	0	1224325..1225560	-	411	187927043	-	Rpic_4877	-	Cystathionine gamma-synthase
1086	 68.58	+1	1225653..1228628	+	991	187927044	-	Rpic_4878	-	response regulator receiver protein
1087	 68.15	+1	1228642..1229181	+	179	187927045	-	Rpic_4879	-	hypothetical protein
1088	 70.85	+1	1229531..1230844	+	437	187927046	-	Rpic_4880	-	glycosyl transferase group 1
1089	 67.16	0	1230841..1231656	+	271	187927047	-	Rpic_4881	-	short-chain dehydrogenase/reductase SDR
1090	 69.92	+1	1231647..1232261	+	204	187927048	-	Rpic_4882	-	histidinol-phosphate phosphatase family protein
1091	 71.04	+1	1232258..1233469	+	403	187927049	-	Rpic_4883	-	glycosyl transferase family 9
1092	 68.09	+1	1233509..1235338	+	609	187927050	-	Rpic_4884	-	Carbamoyltransferase
1093	 70.05	+1	1235335..1236369	+	344	187927051	-	Rpic_4885	-	glycosyl transferase family 2
1094	 71.99	+2	1236366..1237511	+	381	187927052	-	Rpic_4886	-	glycosyl transferase family 9
1095	 67.17	0	1237508..1238500	+	330	187927053	-	Rpic_4887	-	glycosyl transferase, group 1
1096	 66.37	0	1238497..1239519	+	340	187927054	-	Rpic_4888	-	NAD-dependent epimerase/dehydratase
1097	 70.24	+1	1239541..1240464	-	307	187927055	-	Rpic_4889	-	glycosyl transferase family 2
1098	 68.88	+1	1240448..1241170	-	240	187927056	-	Rpic_4890	-	LmbE family protein
1099	 67.95	0	1241167..1241322	-	51	187927057	-	Rpic_4891	-	hypothetical protein
1100	 66.67	0	1241408..1242679	-	423	187927058	-	Rpic_4892	-	natural resistance-associated macrophage protein
1101	 70.41	+1	1242693..1242959	-	88	187927059	-	Rpic_4893	-	hypothetical protein
1102	 67.28	0	1242995..1243486	-	163	187927060	-	Rpic_4894	-	hypothetical protein
1103	 65.39	0	1243641..1244501	+	286	187927061	-	Rpic_4895	-	short-chain dehydrogenase/reductase SDR
1104	 64.76	0	1244823..1248029	+	1068	187927062	-	Rpic_4896	-	acriflavin resistance protein
1105	 68.65	+1	1248022..1249335	+	437	187927063	-	Rpic_4897	-	efflux transporter, RND family, MFP subunit
1106	 68.73	+1	1249332..1250786	+	484	187927064	-	Rpic_4898	-	RND efflux system, outer membrane lipoprotein, NodT family
1107	 67.96	0	1250790..1251719	-	309	187927065	-	Rpic_4899	-	hypothetical protein
1108	 64.71	0	1252171..1252527	+	118	187927066	-	Rpic_4900	-	Endoribonuclease L-PSP
1109	 66.75	0	1252541..1253791	+	416	187927067	-	Rpic_4901	-	FAD dependent oxidoreductase
1110	 67.82	0	1253793..1255271	-	492	187927068	-	Rpic_4902	-	MlrC domain protein
1111	 67.54	0	1255292..1256554	-	420	187927069	-	Rpic_4903	-	amidase, hydantoinase/carbamoylase family
1112	 65.27	0	1256551..1257264	-	237	187927070	-	Rpic_4904	-	ABC transporter related
1113	 66.80	0	1257261..1258031	-	256	187927071	-	Rpic_4905	-	ABC transporter related
1114	 64.91	0	1258028..1258996	-	322	187927072	-	Rpic_4906	-	inner-membrane translocator
1115	 66.90	0	1258996..1259853	-	285	187927073	-	Rpic_4907	-	inner-membrane translocator
1116	 63.58	0	1259915..1261114	-	399	187927074	-	Rpic_4908	-	branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein
1117	 44.79	-2	1261183..1261278	-	31	187927075	-	Rpic_4909	-	hypothetical protein
1118	 64.17	0	1261470..1262309	+	279	187927076	-	Rpic_4910	-	GntR domain protein
1119	 61.71	0	1262314..1262757	-	147	187927077	-	Rpic_4911	-	cyanate lyase
1120	 63.53	0	1263058..1264428	+	456	187927078	-	Rpic_4912	-	Carbohydrate-selective porin OprB
1121	 61.41	0	1264460..1265467	+	335	187927079	-	Rpic_4913	-	D-xylose ABC transporter, periplasmic substrate-binding protein
1122	 64.34	0	1265498..1267045	+	515	187927080	-	Rpic_4914	-	D-xylose ABC transporter, ATPase subunit
1123	 64.93	0	1267052..1268260	+	402	187927081	-	Rpic_4915	-	Monosaccharide-transporting ATPase
1124	 66.88	0	1268396..1269313	+	305	187927082	-	Rpic_4916	-	NAD-dependent epimerase/dehydratase
1125	 55.99	-2	1269371..1270588	-	405	187927083	-	Rpic_4917	-	hypothetical protein
1126	 64.75	0	1271045..1272085	-	346	187927084	-	Rpic_4918	-	transcriptional regulator, LacI family
1127	 64.77	0	1272188..1273081	-	297	187927085	-	Rpic_4919	-	protein of unknown function DUF6 transmembrane
1128	 65.91	0	1273189..1273986	+	265	187927086	-	Rpic_4920	-	transcriptional regulator, AraC family
1129	 67.68	0	1274329..1274823	+	164	187927087	-	Rpic_4921	-	hypothetical protein
1130	 66.26	0	1274820..1275308	+	162	187927088	-	Rpic_4922	-	hypothetical protein
1131	 63.79	0	1275421..1275837	+	138	187927089	-	Rpic_4923	-	transcriptional regulator, MarR family
1132	 59.29	-1	1275888..1276280	+	130	187927090	-	Rpic_4924	-	4-oxalocrotonate tautomerase
1133	 61.67	0	1276280..1276459	+	59	187927091	-	Rpic_4925	-	hypothetical protein
1134	 67.84	0	1276476..1277495	-	339	187927092	-	Rpic_4926	-	transcriptional regulator, AraC family
1135	 65.00	0	1277581..1278723	+	380	187927093	-	Rpic_4927	-	acyl-CoA dehydrogenase domain protein
1136	 67.99	0	1278751..1279956	+	401	187927094	-	Rpic_4928	-	acetyl-CoA acetyltransferase
1137	 67.84	0	1279970..1282096	+	708	187927095	-	Rpic_4929	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding
1138	 64.49	0	1282421..1285084	+	887	187927096	-	Rpic_4930	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1139	 64.57	0	1285820..1286296	+	158	187927097	-	Rpic_4933	-	protein of unknown function DUF305
1140	 62.53	0	1286296..1287771	+	491	187927098	-	Rpic_4934	-	40-residue YVTN family beta-propeller repeat protein
1141	 65.49	0	1287897..1288493	+	198	187927099	-	Rpic_4935	-	heat shock protein DnaJ domain protein
1142	 60.13	-1	1288862..1290253	+	463	187927100	-	Rpic_4936	-	extracellular solute-binding protein family 1
1143	 59.90	-1	1290250..1293192	+	980	187927101	-	Rpic_4937	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1144	 63.13	0	1293429..1294334	-	301	187927102	-	Rpic_4938	-	transcriptional regulator, LysR family
1145	 66.43	0	1294500..1296188	+	562	187927103	-	Rpic_4939	-	malonate decarboxylase, alpha subunit
1146	 67.53	0	1296188..1297117	+	309	187927104	-	Rpic_4940	-	triphosphoribosyl-dephospho-CoA synthase MdcB
1147	 65.36	0	1297104..1297409	+	101	187927105	-	Rpic_4941	-	malonate decarboxylase acyl carrier protein
1148	 66.67	0	1297419..1298264	+	281	187927106	-	Rpic_4942	-	malonate decarboxylase, beta subunit
1149	 68.47	+1	1298261..1299091	+	276	187927107	-	Rpic_4943	-	malonate decarboxylase, gamma subunit
1150	 66.91	0	1299462..1299869	+	135	187927108	-	Rpic_4944	-	malonate transporter, MadL subunit
1151	 66.14	0	1299881..1300645	+	254	187927109	-	Rpic_4945	-	malonate transporter, MadM subunit
1152	 69.18	+1	1300642..1301277	+	211	187927110	-	Rpic_4946	-	phosphoribosyl-dephospho-CoA transferase
1153	 66.03	0	1301274..1302209	+	311	187927111	-	Rpic_4947	-	malonate decarboxylase, epsilon subunit
64.67	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.