IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.77   STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
907	 68.46	+1	988701..989927	-	408	94313454	-	Rmet_4529	-	hypothetical protein
908	 68.77	+1	990056..991147	-	363	94313455	-	Rmet_4530	-	hypothetical protein
909	 67.92	+1	991144..992739	-	531	94313456	-	Rmet_4531	-	tetratricopeptide TPR_2
910	 66.97	0	992736..993740	-	334	94313457	-	Rmet_4532	-	von Willebrand factor, type A
911	 67.87	+1	993727..994224	-	165	94313458	-	Rmet_4533	-	hypothetical protein
912	 68.45	+1	994368..995207	-	279	94313459	-	Rmet_4534	-	phage integrase
913	 71.33	+2	995301..996008	-	235	94313460	-	Rmet_4535	-	hypothetical protein
914	 61.44	0	996119..997075	-	318	94313461	-	Rmet_4536	-	hypothetical protein
915	 66.05	0	997274..998572	+	432	94313462	-	Rmet_4537	-	D-3-phosphoglycerate dehydrogenase
916	 65.88	0	998597..999106	-	169	94313463	-	Rmet_4538	-	MerR family transcriptional regulator
917	 63.40	0	999229..999657	+	142	94313464	-	Rmet_4539	-	endoribonuclease L-PSP
918	 66.24	0	999760..1000227	+	155	94313465	-	Rmet_4540	-	hypothetical protein
919	 63.44	0	1000216..1000773	-	185	94313466	-	Rmet_4541	-	hypothetical protein
920	 66.19	0	1000965..1002437	-	490	94313467	-	Rmet_4542	-	major facilitator transporter
921	 63.83	0	1002531..1003445	-	304	94313468	-	Rmet_4543	-	LysR family transcriptional regulator
922	 63.79	0	1003549..1004313	+	254	94313469	-	Rmet_4544	-	short-chain dehydrogenase/reductase SDR
923	 63.77	0	1004348..1004761	-	137	94313470	-	Rmet_4545	-	hypothetical protein
924	 63.57	0	1004866..1005447	-	193	94313471	-	Rmet_4546	-	putative transcriptional regulator
925	 63.13	0	1005600..1006757	-	385	94313472	-	Rmet_4547	-	putative outer membrane porin signal peptide protein
926	 63.84	0	1007050..1007793	+	247	94313473	-	Rmet_4548	-	TetR family transcriptional regulator
927	 65.88	0	1007834..1013713	-	1959	94313474	-	Rmet_4549	-	UvrA family protein
928	 64.72	0	1014400..1014708	+	102	94313475	-	Rmet_4550	-	hypothetical protein
929	 58.68	-1	1015083..1015370	+	95	94313476	-	Rmet_4551	-	hypothetical protein
930	 54.16	-2	1015950..1018508	+	852	94313477	-	Rmet_4552	-	curculin-like (mannose-binding) lectin
931	 59.87	-1	1020218..1020673	+	151	94313478	-	Rmet_4556	-	phage integrase
932	 62.33	0	1020965..1021471	-	168	94313479	-	Rmet_4557	-	methionine sulfoxide reductase A
933	 67.00	0	1021538..1022143	+	201	94313480	-	Rmet_4558	-	uracil-DNA glycosylase superfamily protein
934	 62.00	0	1022160..1022630	-	156	94313481	-	Rmet_4559	-	AsnC family transcriptional regulator
935	 66.24	0	1022757..1023695	+	312	94313482	-	Rmet_4560	-	hypothetical protein
936	 62.42	0	1023709..1024179	-	156	94313483	-	Rmet_4561	-	AsnC family transcriptional regulator
937	 66.34	0	1024348..1024653	+	101	94313484	-	Rmet_4562	-	hypothetical protein
938	 65.48	0	1024670..1025593	-	307	94313485	-	Rmet_4563	-	LysR family transcriptional regulator
939	 65.71	0	1025715..1028126	+	803	94313486	-	Rmet_4564	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
940	 62.44	0	1028158..1030359	+	733	94313487	-	Rmet_4565	-	TonB-dependent receptor
941	 63.91	0	1030430..1031842	-	470	94313488	-	Rmet_4566	-	hypothetical protein
942	 66.55	0	1032634..1033524	-	296	94313489	-	Rmet_4567	-	hypothetical protein
943	 65.89	0	1034091..1035371	-	426	94313490	-	Rmet_4568	-	cytosine deaminase
944	 67.27	0	1035455..1036120	-	221	94313491	-	Rmet_4569	-	TetR family transcriptional regulator
945	 62.62	0	1036117..1036734	-	205	94313492	-	Rmet_4570	-	uracil phosphoribosyltransferase
946	 68.58	+1	1036959..1038266	-	435	94313493	-	Rmet_4571	-	hypothetical protein
947	 65.29	0	1038263..1039501	-	412	94313494	-	Rmet_4572	-	hypothetical protein
948	 65.58	0	1039708..1040808	-	366	94313495	-	Rmet_4573	-	acyltransferase 3
949	 65.23	0	1041572..1042756	+	394	94313496	-	Rmet_4574	-	acyl-CoA dehydrogenase-like protein
950	 67.63	+1	1042840..1043979	+	379	94313497	-	Rmet_4575	-	acyl-CoA dehydrogenase-like protein
951	 62.59	0	1044190..1045146	+	318	94313498	-	Rmet_4576	-	binding-protein-dependent transport systems inner membrane component
952	 67.53	+1	1045146..1046072	+	308	94313499	-	Rmet_4577	-	binding-protein-dependent transport systems inner membrane component
953	 61.81	0	1046147..1047874	+	575	94313500	-	Rmet_4578	-	extracellular solute-binding protein
954	 66.36	0	1047915..1048892	+	325	94313501	-	Rmet_4579	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein
955	 65.13	0	1049005..1049982	+	325	94313502	-	Rmet_4580	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein
956	 64.61	0	1050030..1051391	-	453	94313503	-	Rmet_4581	-	TetR family transcriptional regulator
957	 66.48	0	1051587..1053677	+	696	94313504	-	Rmet_4582	-	3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase
958	 65.57	0	1053871..1054785	+	304	94313505	-	Rmet_4583	-	extracellular solute-binding protein
959	 60.67	0	1054941..1055240	+	99	94313506	-	Rmet_4584	-	hypothetical protein
960	 64.20	0	1055381..1057243	-	620	94313507	-	Rmet_4585	-	dihydroxy-acid dehydratase
961	 63.07	0	1057575..1058435	-	286	94313508	-	Rmet_4586	-	hypothetical protein
962	 65.81	0	1058783..1060525	+	580	94313509	-	Rmet_4587	-	glycosyl transferase family protein
963	 63.71	0	1060522..1060893	+	123	94313510	-	Rmet_4588	-	putative small multidrug resistance transmembrane protein
964	 65.31	0	1060899..1062074	+	391	94313511	-	Rmet_4589	-	DegT/DnrJ/EryC1/StrS aminotransferase
965	 63.37	0	1062053..1063054	+	333	94313512	-	Rmet_4590	-	glycosyl transferase family protein
966	 65.70	0	1063042..1063968	+	308	94313513	-	Rmet_4591	-	hypothetical protein
967	 61.92	0	1063980..1065032	+	350	94313514	-	Rmet_4592	-	hypothetical protein
968	 65.88	0	1065040..1065930	+	296	94313515	-	Rmet_4593	-	polysaccharide deacetylase
969	 66.46	0	1065984..1068368	-	794	94313516	-	Rmet_4594	-	heavy metal translocating P-type ATPase
970	 65.08	0	1068503..1068880	+	125	94313517	-	Rmet_4595	-	hypothetical protein
971	 68.29	+1	1068978..1070273	+	431	94313518	-	Rmet_4596	-	outer membrane efflux protein
972	 65.20	0	1070285..1070626	+	113	94313519	-	Rmet_4597	-	secretion protein HlyD
973	 64.98	0	1070623..1073589	-	988	94313520	-	Rmet_4598	-	transposase Tn3
974	 62.03	0	1073592..1074152	-	186	94313521	-	Rmet_4599	-	resolvase-like protein
975	 59.03	-1	1074566..1076044	+	492	94313522	-	Rmet_4600	-	sulphate transporter
976	 62.38	0	1076059..1076922	+	287	94313523	-	Rmet_4601	-	hypothetical protein
977	 60.42	0	1076939..1077274	+	111	94313524	-	Rmet_4602	-	TraR/DksA family transcriptional regulator
978	 61.53	0	1077739..1078575	+	278	94313525	-	Rmet_4603	-	GntR family transcriptional regulator
979	 60.00	-1	1078660..1079004	+	114	94313526	-	Rmet_4604	-	hypothetical protein
980	 63.28	0	1079420..1083349	-	1309	94313527	-	Rmet_4605	-	PAS/PAC sensor hybrid histidine kinase
981	 62.58	0	1083839..1085134	+	431	94313528	-	Rmet_4606	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
982	 64.28	0	1085213..1087387	-	724	94313529	-	Rmet_4607	-	TonB-dependent copper receptor
983	 68.83	+1	1087434..1087802	-	122	94313530	-	Rmet_4608	-	hypothetical protein
984	 66.87	0	1088251..1089237	+	328	94313531	-	Rmet_4609	-	hypothetical protein
985	 64.97	0	1089283..1090638	+	451	94313532	-	Rmet_4610	-	hypothetical protein
986	 66.67	0	1090668..1091018	+	116	94313533	-	Rmet_4611	-	hypothetical protein
987	 70.51	+1	1090928..1091785	-	285	94313534	-	Rmet_4612	-	IclR family transcriptional regulator
988	 66.83	0	1091829..1093022	-	397	94313535	-	Rmet_4613	-	acyl-CoA dehydrogenase-like protein
989	 65.87	0	1093037..1093789	-	250	94313536	-	Rmet_4614	-	short-chain dehydrogenase/reductase SDR
990	 65.49	0	1093832..1094596	+	254	94313537	-	Rmet_4615	-	GntR family transcriptional regulator
991	 65.37	0	1094773..1095618	+	281	94313538	-	Rmet_4616	-	hypothetical protein
992	 63.61	0	1095946..1098171	+	741	94313539	-	Rmet_4617	-	TonB-dependent siderophore receptor
993	 65.15	0	1098225..1098620	-	131	94313540	-	Rmet_4618	-	hypothetical protein
994	 66.88	0	1098710..1100140	-	476	94313541	-	Rmet_4619	-	RND efflux system, outer membrane lipoprotein, NodT
995	 64.21	0	1100159..1101337	-	392	94313542	-	Rmet_4620	-	secretion protein HlyD
996	 61.58	0	1101338..1101730	-	130	94313543	-	Rmet_4621	-	hypothetical protein
997	 66.67	0	1102330..1102788	+	152	94313544	-	Rmet_4622	-	hypothetical protein
998	 67.47	+1	1102898..1103146	+	82	94313545	-	Rmet_4623	-	hypothetical protein
999	 64.88	0	1103179..1105416	+	745	94313546	-	Rmet_4624	-	twin-arginine translocation pathway signal
1000	 68.47	+1	1105475..1105972	-	165	94313547	-	Rmet_4625	-	hypothetical protein
1001	 66.19	0	1106301..1109252	-	983	94313548	-	Rmet_4626	-	Hpt sensor hybrid histidine kinase
1002	 62.83	0	1109249..1109899	-	216	94313549	-	Rmet_4627	-	two component LuxR family transcriptional regulator
1003	 65.62	0	1109958..1111196	+	412	94313550	-	Rmet_4628	-	zinc-binding alcohol dehydrogenase
1004	 66.94	0	1111314..1112405	+	363	94313551	-	Rmet_4629	-	AraC family transcriptional regulator
1005	 66.57	0	1112466..1113527	-	353	94313552	-	Rmet_4630	-	hypothetical protein
1006	 63.36	0	1113882..1114940	+	352	94313553	-	Rmet_4631	-	hypothetical protein
63.77	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.