IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.77   STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
850	 59.03	-1	922641..924119	-	492	94313397	-	Rmet_4472	-	sulphate transporter
851	 62.03	0	924533..925093	+	186	94313398	-	Rmet_4473	-	resolvase-like protein
852	 64.98	0	925096..928062	+	988	94313399	-	Rmet_4474	-	transposase Tn3
853	 62.09	0	928099..929277	+	392	94313400	-	Rmet_4475	-	branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein
854	 62.94	0	929382..930239	+	285	94313401	-	Rmet_4476	-	inner-membrane translocator
855	 64.16	0	930239..931237	+	332	94313402	-	Rmet_4477	-	inner-membrane translocator
856	 65.49	0	931234..932001	+	255	94313403	-	Rmet_4478	-	ABC transporter related
857	 62.84	0	931998..932702	+	234	94313404	-	Rmet_4479	-	ABC transporter related
858	 63.97	0	932726..933988	+	420	94313405	-	Rmet_4480	-	amidase, hydantoinase/carbamoylase
859	 64.73	0	934022..935515	+	497	94313406	-	Rmet_4481	-	MlrC-like protein
860	 63.47	0	935555..936148	-	197	94313407	-	Rmet_4482	-	TetR family transcriptional regulator
861	 62.44	0	936224..936649	+	141	94313408	-	Rmet_4483	-	phenylacetic acid degradation-related protein
862	 62.17	0	936755..937399	+	214	94313409	-	Rmet_4484	-	bifunctional deaminase-reductase-like protein
863	 60.65	0	937439..938302	-	287	94313410	-	Rmet_4485	-	hypothetical protein
864	 62.54	0	938866..939786	-	306	94313411	-	Rmet_4486	-	hypothetical protein
865	 65.00	0	939893..940252	-	119	94313412	-	Rmet_4487	-	hypothetical protein
866	 57.21	-1	940909..941775	-	288	94313413	-	Rmet_4488	-	hypothetical protein
867	 58.22	-1	941946..943022	-	358	94313414	-	Rmet_4489	-	zonular occludens toxin
868	 60.23	-1	943022..943285	-	87	94313415	-	Rmet_4490	-	hypothetical protein
869	 53.10	-2	943289..943627	-	112	94313416	-	Rmet_4491	-	hypothetical protein
870	 59.44	-1	943630..945165	-	511	94313417	-	Rmet_4492	-	hypothetical protein
871	 62.35	0	945857..946111	-	84	94313418	-	Rmet_4493	-	hypothetical protein
872	 58.33	-1	946823..947134	-	103	94313419	-	Rmet_4494	-	hypothetical protein
873	 54.13	-2	947221..947571	+	116	94313420	-	Rmet_4495	-	hypothetical protein
874	 62.69	0	947754..950168	-	804	94313421	-	Rmet_4496	-	TonB-dependent siderophore receptor
875	 63.45	0	950179..952413	-	744	94313422	-	Rmet_4497	-	TonB-dependent siderophore receptor
876	 66.06	0	952517..953503	-	328	94313423	-	Rmet_4498	-	putative FecR
877	 61.28	0	953531..954031	-	166	94313424	-	Rmet_4499	-	sigma-24 (FecI-like)
878	 60.66	0	954337..954702	+	121	94313425	-	Rmet_4500	-	hypothetical protein
879	 64.13	0	954714..955697	-	327	94313426	-	Rmet_4501	-	twin-arginine translocation pathway signal
880	 66.25	0	955773..957467	-	564	94313427	-	Rmet_4502	-	acyl-CoA synthetase
881	 65.30	0	957481..958581	-	366	94313428	-	Rmet_4503	-	hypothetical protein
882	 66.42	0	958785..959987	+	400	94313429	-	Rmet_4504	-	AraC family transcriptional regulator
883	 63.97	0	959944..960870	-	308	94313430	-	Rmet_4505	-	LysR family transcriptional regulator
884	 65.59	0	961163..962467	+	434	94313431	-	Rmet_4506	-	major facilitator transporter
885	 65.76	0	962522..963733	+	403	94313432	-	Rmet_4507	-	peptidase M20D, amidohydrolase
886	 66.21	0	963786..964658	-	290	94313433	-	Rmet_4508	-	type IV pilus assembly PilZ
887	 55.34	-2	964959..965267	+	102	94313434	-	Rmet_4509	-	hypothetical protein
888	 67.43	+1	965264..966313	+	349	94313435	-	Rmet_4510	-	multidrug resistance protein MdtN
889	 67.02	0	966294..968285	+	663	94313436	-	Rmet_4511	-	fusaric acid resistance protein region
890	 67.37	+1	968278..969840	+	520	94313437	-	Rmet_4512	-	outer membrane efflux protein
891	 65.38	0	969848..970699	-	283	94313438	-	Rmet_4513	-	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ
892	 68.27	+1	970875..972554	-	559	94313439	-	Rmet_4514	-	phage integrase
893	 65.19	0	973119..974270	+	383	94313440	-	Rmet_4515	-	putative PAS/PAC sensor protein
894	 64.50	0	974267..974911	+	214	94313441	-	Rmet_4516	-	two component LuxR family transcriptional regulator
895	 65.34	0	974942..975394	-	150	94313442	-	Rmet_4517	-	hypothetical protein
896	 67.49	+1	975593..976441	+	282	94313443	-	Rmet_4518	-	hypothetical protein
897	 63.43	0	976517..977875	-	452	94313444	-	Rmet_4519	-	beta-lactamase-like protein
898	 68.48	+1	977980..978804	-	274	94313445	-	Rmet_4520	-	hypothetical protein
899	 62.66	0	979205..979978	+	257	94313446	-	Rmet_4521	-	Crp/FNR family transcriptional regulator
900	 66.35	0	979999..980940	-	313	94313447	-	Rmet_4522	-	transcriptional regulator
901	 65.42	0	981084..981884	+	266	94313448	-	Rmet_4523	-	short-chain dehydrogenase/reductase SDR
902	 62.52	0	981918..982568	-	216	94313449	-	Rmet_4524	-	negative transcriptional regulator
903	 67.36	+1	982829..983836	-	335	94313450	-	Rmet_4525	-	hypothetical protein
904	 65.24	0	983854..984834	-	326	94313451	-	Rmet_4526	-	ATPase
905	 67.97	+1	984831..987365	-	844	94313452	-	Rmet_4527	-	spermine synthase
906	 64.53	0	987561..988637	-	358	94313453	-	Rmet_4528	-	putative nonspecific acid phosphatase precursor
907	 68.46	+1	988701..989927	-	408	94313454	-	Rmet_4529	-	hypothetical protein
908	 68.77	+1	990056..991147	-	363	94313455	-	Rmet_4530	-	hypothetical protein
909	 67.92	+1	991144..992739	-	531	94313456	-	Rmet_4531	-	tetratricopeptide TPR_2
910	 66.97	0	992736..993740	-	334	94313457	-	Rmet_4532	-	von Willebrand factor, type A
911	 67.87	+1	993727..994224	-	165	94313458	-	Rmet_4533	-	hypothetical protein
912	 68.45	+1	994368..995207	-	279	94313459	-	Rmet_4534	-	phage integrase
913	 71.33	+2	995301..996008	-	235	94313460	-	Rmet_4535	-	hypothetical protein
914	 61.44	0	996119..997075	-	318	94313461	-	Rmet_4536	-	hypothetical protein
915	 66.05	0	997274..998572	+	432	94313462	-	Rmet_4537	-	D-3-phosphoglycerate dehydrogenase
916	 65.88	0	998597..999106	-	169	94313463	-	Rmet_4538	-	MerR family transcriptional regulator
917	 63.40	0	999229..999657	+	142	94313464	-	Rmet_4539	-	endoribonuclease L-PSP
918	 66.24	0	999760..1000227	+	155	94313465	-	Rmet_4540	-	hypothetical protein
919	 63.44	0	1000216..1000773	-	185	94313466	-	Rmet_4541	-	hypothetical protein
920	 66.19	0	1000965..1002437	-	490	94313467	-	Rmet_4542	-	major facilitator transporter
921	 63.83	0	1002531..1003445	-	304	94313468	-	Rmet_4543	-	LysR family transcriptional regulator
922	 63.79	0	1003549..1004313	+	254	94313469	-	Rmet_4544	-	short-chain dehydrogenase/reductase SDR
923	 63.77	0	1004348..1004761	-	137	94313470	-	Rmet_4545	-	hypothetical protein
924	 63.57	0	1004866..1005447	-	193	94313471	-	Rmet_4546	-	putative transcriptional regulator
925	 63.13	0	1005600..1006757	-	385	94313472	-	Rmet_4547	-	putative outer membrane porin signal peptide protein
926	 63.84	0	1007050..1007793	+	247	94313473	-	Rmet_4548	-	TetR family transcriptional regulator
927	 65.88	0	1007834..1013713	-	1959	94313474	-	Rmet_4549	-	UvrA family protein
928	 64.72	0	1014400..1014708	+	102	94313475	-	Rmet_4550	-	hypothetical protein
929	 58.68	-1	1015083..1015370	+	95	94313476	-	Rmet_4551	-	hypothetical protein
930	 54.16	-2	1015950..1018508	+	852	94313477	-	Rmet_4552	-	curculin-like (mannose-binding) lectin
931	 59.87	-1	1020218..1020673	+	151	94313478	-	Rmet_4556	-	phage integrase
932	 62.33	0	1020965..1021471	-	168	94313479	-	Rmet_4557	-	methionine sulfoxide reductase A
933	 67.00	0	1021538..1022143	+	201	94313480	-	Rmet_4558	-	uracil-DNA glycosylase superfamily protein
934	 62.00	0	1022160..1022630	-	156	94313481	-	Rmet_4559	-	AsnC family transcriptional regulator
935	 66.24	0	1022757..1023695	+	312	94313482	-	Rmet_4560	-	hypothetical protein
936	 62.42	0	1023709..1024179	-	156	94313483	-	Rmet_4561	-	AsnC family transcriptional regulator
937	 66.34	0	1024348..1024653	+	101	94313484	-	Rmet_4562	-	hypothetical protein
938	 65.48	0	1024670..1025593	-	307	94313485	-	Rmet_4563	-	LysR family transcriptional regulator
939	 65.71	0	1025715..1028126	+	803	94313486	-	Rmet_4564	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
940	 62.44	0	1028158..1030359	+	733	94313487	-	Rmet_4565	-	TonB-dependent receptor
941	 63.91	0	1030430..1031842	-	470	94313488	-	Rmet_4566	-	hypothetical protein
942	 66.55	0	1032634..1033524	-	296	94313489	-	Rmet_4567	-	hypothetical protein
943	 65.89	0	1034091..1035371	-	426	94313490	-	Rmet_4568	-	cytosine deaminase
944	 67.27	0	1035455..1036120	-	221	94313491	-	Rmet_4569	-	TetR family transcriptional regulator
945	 62.62	0	1036117..1036734	-	205	94313492	-	Rmet_4570	-	uracil phosphoribosyltransferase
946	 68.58	+1	1036959..1038266	-	435	94313493	-	Rmet_4571	-	hypothetical protein
947	 65.29	0	1038263..1039501	-	412	94313494	-	Rmet_4572	-	hypothetical protein
948	 65.58	0	1039708..1040808	-	366	94313495	-	Rmet_4573	-	acyltransferase 3
949	 65.23	0	1041572..1042756	+	394	94313496	-	Rmet_4574	-	acyl-CoA dehydrogenase-like protein
63.77	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.