IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.77   STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
811	 65.96	0	881883..882866	+	327	94313358	-	Rmet_4433	-	hypothetical protein
812	 62.50	0	883073..883552	+	159	94313359	-	Rmet_4434	-	hypothetical protein
813	 66.55	0	883661..884497	-	278	94313360	-	Rmet_4435	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
814	 68.14	+1	884494..885375	-	293	94313361	-	Rmet_4436	-	Beta-lactamase class A-like protein
815	 67.43	+1	885385..886698	-	437	94313362	-	Rmet_4437	-	hypothetical protein
816	 66.57	0	886930..887919	-	329	94313363	-	Rmet_4438	-	hypothetical protein
817	 68.62	+1	887978..889411	-	477	94313364	-	Rmet_4439	-	dihydroorotase
818	 64.54	0	889453..889875	-	140	94313365	-	Rmet_4440	-	endoribonuclease L-PSP
819	 69.14	+1	889891..891144	-	417	94313366	-	Rmet_4441	-	FAD dependent oxidoreductase
820	 69.05	+1	891262..892266	-	334	94313367	-	Rmet_4442	-	LysR family transcriptional regulator
821	 63.35	0	892283..893578	-	431	94313368	-	Rmet_4443	-	hypothetical protein
822	 66.67	0	893643..894614	-	323	94313369	-	Rmet_4444	-	hypothetical protein
823	 67.90	+1	894755..895645	+	296	94313370	-	Rmet_4445	-	LysR family transcriptional regulator
824	 65.57	0	895836..897017	+	393	94313371	-	Rmet_4446	-	L-carnitine dehydratase/bile acid-inducible protein F
825	 63.24	0	897069..897827	+	252	94313372	-	Rmet_4447	-	GntR family transcriptional regulator
826	 64.00	0	897824..898648	+	274	94313373	-	Rmet_4448	-	enoyl-CoA hydratase
827	 64.53	0	898729..899712	+	327	94313374	-	Rmet_4449	-	hypothetical protein
828	 69.93	+1	899808..900419	+	203	94313375	-	Rmet_4450	-	putative transcription regulator protein
829	 64.20	0	900445..900930	-	161	94313376	-	Rmet_4451	-	hypothetical protein
830	 64.23	0	900967..901377	-	136	94313377	-	Rmet_4452	-	response regulator receiver domain-containing protein
831	 66.13	0	901686..902057	+	123	94313378	-	Rmet_4453	-	TraR/DksA family transcriptional regulator
832	 65.77	0	902590..904257	-	555	94313379	-	Rmet_4454	-	AMP-dependent synthetase and ligase
833	 62.31	0	904371..905333	-	320	94313380	-	Rmet_4455	-	hypothetical protein
834	 64.10	0	905685..906074	+	129	94313381	-	Rmet_4456	-	cupin 2, barrel
835	 63.62	0	906137..907120	+	327	94313382	-	Rmet_4457	-	hypothetical protein
836	 65.90	0	907133..908305	+	390	94313383	-	Rmet_4458	-	acyl-CoA dehydrogenase-like protein
837	 65.98	0	908746..909621	-	291	94313384	-	Rmet_4459	-	6-phosphogluconate dehydrogenase, NAD-binding
838	 63.52	0	909685..911814	+	709	94313385	-	Rmet_4460	-	diguanylate cyclase/phosphodiesterase
839	 70.04	+1	911854..912120	-	88	94313386	-	Rmet_4461	-	hypothetical protein
840	 61.00	0	912454..912753	+	99	94313387	-	Rmet_4462	-	hypothetical protein
841	 61.81	0	912884..913912	+	342	94313388	-	Rmet_4463	-	integrase catalytic subunit
842	 62.58	0	913901..914365	-	154	94313389	-	Rmet_4464	-	hypothetical protein
843	 63.77	0	914575..915195	+	206	94313390	-	Rmet_4465	-	two component heavy metal response transcriptional regulator
844	 66.04	0	915252..916694	+	480	94313391	-	Rmet_4466	-	heavy metal sensor signal transduction histidine kinase
845	 60.23	-1	916712..917146	+	144	94313392	-	Rmet_4467	-	3-demethylubiquinone-9 3-methyltransferase
846	 64.37	0	917268..920399	-	1043	94313393	-	Rmet_4468	-	heavy metal efflux pump CzcA
847	 65.66	0	920414..921307	-	297	94313394	-	Rmet_4469	-	secretion protein HlyD
848	 60.42	0	921411..921746	-	111	94313395	-	Rmet_4470	-	TraR/DksA family transcriptional regulator
849	 62.38	0	921763..922626	-	287	94313396	-	Rmet_4471	-	hypothetical protein
850	 59.03	-1	922641..924119	-	492	94313397	-	Rmet_4472	-	sulphate transporter
851	 62.03	0	924533..925093	+	186	94313398	-	Rmet_4473	-	resolvase-like protein
852	 64.98	0	925096..928062	+	988	94313399	-	Rmet_4474	-	transposase Tn3
853	 62.09	0	928099..929277	+	392	94313400	-	Rmet_4475	-	branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein
854	 62.94	0	929382..930239	+	285	94313401	-	Rmet_4476	-	inner-membrane translocator
855	 64.16	0	930239..931237	+	332	94313402	-	Rmet_4477	-	inner-membrane translocator
856	 65.49	0	931234..932001	+	255	94313403	-	Rmet_4478	-	ABC transporter related
857	 62.84	0	931998..932702	+	234	94313404	-	Rmet_4479	-	ABC transporter related
858	 63.97	0	932726..933988	+	420	94313405	-	Rmet_4480	-	amidase, hydantoinase/carbamoylase
859	 64.73	0	934022..935515	+	497	94313406	-	Rmet_4481	-	MlrC-like protein
860	 63.47	0	935555..936148	-	197	94313407	-	Rmet_4482	-	TetR family transcriptional regulator
861	 62.44	0	936224..936649	+	141	94313408	-	Rmet_4483	-	phenylacetic acid degradation-related protein
862	 62.17	0	936755..937399	+	214	94313409	-	Rmet_4484	-	bifunctional deaminase-reductase-like protein
863	 60.65	0	937439..938302	-	287	94313410	-	Rmet_4485	-	hypothetical protein
864	 62.54	0	938866..939786	-	306	94313411	-	Rmet_4486	-	hypothetical protein
865	 65.00	0	939893..940252	-	119	94313412	-	Rmet_4487	-	hypothetical protein
866	 57.21	-1	940909..941775	-	288	94313413	-	Rmet_4488	-	hypothetical protein
867	 58.22	-1	941946..943022	-	358	94313414	-	Rmet_4489	-	zonular occludens toxin
868	 60.23	-1	943022..943285	-	87	94313415	-	Rmet_4490	-	hypothetical protein
869	 53.10	-2	943289..943627	-	112	94313416	-	Rmet_4491	-	hypothetical protein
870	 59.44	-1	943630..945165	-	511	94313417	-	Rmet_4492	-	hypothetical protein
871	 62.35	0	945857..946111	-	84	94313418	-	Rmet_4493	-	hypothetical protein
872	 58.33	-1	946823..947134	-	103	94313419	-	Rmet_4494	-	hypothetical protein
873	 54.13	-2	947221..947571	+	116	94313420	-	Rmet_4495	-	hypothetical protein
874	 62.69	0	947754..950168	-	804	94313421	-	Rmet_4496	-	TonB-dependent siderophore receptor
875	 63.45	0	950179..952413	-	744	94313422	-	Rmet_4497	-	TonB-dependent siderophore receptor
876	 66.06	0	952517..953503	-	328	94313423	-	Rmet_4498	-	putative FecR
877	 61.28	0	953531..954031	-	166	94313424	-	Rmet_4499	-	sigma-24 (FecI-like)
878	 60.66	0	954337..954702	+	121	94313425	-	Rmet_4500	-	hypothetical protein
879	 64.13	0	954714..955697	-	327	94313426	-	Rmet_4501	-	twin-arginine translocation pathway signal
880	 66.25	0	955773..957467	-	564	94313427	-	Rmet_4502	-	acyl-CoA synthetase
881	 65.30	0	957481..958581	-	366	94313428	-	Rmet_4503	-	hypothetical protein
882	 66.42	0	958785..959987	+	400	94313429	-	Rmet_4504	-	AraC family transcriptional regulator
883	 63.97	0	959944..960870	-	308	94313430	-	Rmet_4505	-	LysR family transcriptional regulator
884	 65.59	0	961163..962467	+	434	94313431	-	Rmet_4506	-	major facilitator transporter
885	 65.76	0	962522..963733	+	403	94313432	-	Rmet_4507	-	peptidase M20D, amidohydrolase
886	 66.21	0	963786..964658	-	290	94313433	-	Rmet_4508	-	type IV pilus assembly PilZ
887	 55.34	-2	964959..965267	+	102	94313434	-	Rmet_4509	-	hypothetical protein
888	 67.43	+1	965264..966313	+	349	94313435	-	Rmet_4510	-	multidrug resistance protein MdtN
889	 67.02	0	966294..968285	+	663	94313436	-	Rmet_4511	-	fusaric acid resistance protein region
890	 67.37	+1	968278..969840	+	520	94313437	-	Rmet_4512	-	outer membrane efflux protein
891	 65.38	0	969848..970699	-	283	94313438	-	Rmet_4513	-	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ
892	 68.27	+1	970875..972554	-	559	94313439	-	Rmet_4514	-	phage integrase
893	 65.19	0	973119..974270	+	383	94313440	-	Rmet_4515	-	putative PAS/PAC sensor protein
894	 64.50	0	974267..974911	+	214	94313441	-	Rmet_4516	-	two component LuxR family transcriptional regulator
895	 65.34	0	974942..975394	-	150	94313442	-	Rmet_4517	-	hypothetical protein
896	 67.49	+1	975593..976441	+	282	94313443	-	Rmet_4518	-	hypothetical protein
897	 63.43	0	976517..977875	-	452	94313444	-	Rmet_4519	-	beta-lactamase-like protein
898	 68.48	+1	977980..978804	-	274	94313445	-	Rmet_4520	-	hypothetical protein
899	 62.66	0	979205..979978	+	257	94313446	-	Rmet_4521	-	Crp/FNR family transcriptional regulator
900	 66.35	0	979999..980940	-	313	94313447	-	Rmet_4522	-	transcriptional regulator
901	 65.42	0	981084..981884	+	266	94313448	-	Rmet_4523	-	short-chain dehydrogenase/reductase SDR
902	 62.52	0	981918..982568	-	216	94313449	-	Rmet_4524	-	negative transcriptional regulator
903	 67.36	+1	982829..983836	-	335	94313450	-	Rmet_4525	-	hypothetical protein
904	 65.24	0	983854..984834	-	326	94313451	-	Rmet_4526	-	ATPase
905	 67.97	+1	984831..987365	-	844	94313452	-	Rmet_4527	-	spermine synthase
906	 64.53	0	987561..988637	-	358	94313453	-	Rmet_4528	-	putative nonspecific acid phosphatase precursor
907	 68.46	+1	988701..989927	-	408	94313454	-	Rmet_4529	-	hypothetical protein
908	 68.77	+1	990056..991147	-	363	94313455	-	Rmet_4530	-	hypothetical protein
909	 67.92	+1	991144..992739	-	531	94313456	-	Rmet_4531	-	tetratricopeptide TPR_2
910	 66.97	0	992736..993740	-	334	94313457	-	Rmet_4532	-	von Willebrand factor, type A
63.77	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.