IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.77   STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
774	 63.54	0	845593..846681	-	362	94313321	-	Rmet_4396	-	extracellular solute-binding protein
775	 64.62	0	846678..847460	-	260	94313322	-	Rmet_4397	-	binding-protein-dependent transport systems inner membrane component
776	 65.09	0	847457..848473	-	338	94313323	-	Rmet_4398	-	binding-protein-dependent transport systems inner membrane component
777	 66.12	0	848489..849583	-	364	94313324	-	Rmet_4399	-	spermidine/putrescine ABC transporter ATP-binding subunit
778	 63.60	0	849832..850092	-	86	94313325	-	Rmet_4400	-	hypothetical protein
779	 60.14	-1	850177..850620	+	147	94313326	-	Rmet_4401	-	hypothetical protein
780	 65.15	0	850639..851559	-	306	94313327	-	Rmet_4402	-	hypothetical protein
781	 65.71	0	851634..853619	-	661	94313328	-	Rmet_4403	-	squalene cyclase
782	 63.67	0	853616..854215	-	199	94313329	-	Rmet_4404	-	TetR family transcriptional regulator
783	 63.31	0	854331..854687	+	118	94313330	-	Rmet_4405	-	hypothetical protein
784	 63.11	0	854756..854980	-	74	94313331	-	Rmet_4406	-	Zinc finger, CDGSH-type
785	 64.87	0	855175..855564	+	129	94313332	-	Rmet_4407	-	hypothetical protein
786	 67.39	+1	855908..856876	-	322	94313333	-	Rmet_4408	-	hypothetical protein
787	 65.45	0	857027..857932	-	301	94313334	-	Rmet_4409	-	taurine catabolism dioxygenase TauD/TfdA
788	 65.77	0	857988..859220	-	410	94313335	-	Rmet_4410	-	acyl-CoA dehydrogenase-like protein
789	 68.77	+1	859217..861355	-	712	94313336	-	Rmet_4411	-	CoA-binding
790	 65.91	0	861382..861780	-	132	94313337	-	Rmet_4412	-	hypothetical protein
791	 66.75	0	861782..862951	-	389	94313338	-	Rmet_4413	-	acetyl-CoA acetyltransferase
792	 65.46	0	862962..863876	-	304	94313339	-	Rmet_4414	-	short-chain dehydrogenase/reductase SDR
793	 66.36	0	863924..864886	-	320	94313340	-	Rmet_4415	-	hypothetical protein
794	 66.41	0	865278..866054	+	258	94313341	-	Rmet_4416	-	GntR family transcriptional regulator
795	 62.16	0	866095..866316	-	73	94313342	-	Rmet_4417	-	hypothetical protein
796	 61.81	0	866321..867349	-	342	94313343	-	Rmet_4418	-	integrase catalytic subunit
797	 62.13	0	867357..868172	-	271	94313344	-	Rmet_4419	-	hypothetical protein
798	 66.51	0	868216..869457	-	413	94313345	-	Rmet_4420	-	L-carnitine dehydratase/bile acid-inducible protein F
799	 67.92	+1	869483..870676	-	397	94313346	-	Rmet_4421	-	MmgE/PrpD family protein
800	 61.11	0	870716..870931	-	71	94313347	-	Rmet_4422	-	hypothetical protein
801	 65.59	0	870985..871818	-	277	94313348	-	Rmet_4423	-	ATPase
802	 65.56	0	871815..873254	-	479	94313349	-	Rmet_4424	-	integrase catalytic subunit
803	 64.39	0	873366..873935	-	189	94313350	-	Rmet_4425	-	hypothetical protein
804	 70.61	+1	874037..874366	-	109	94313351	-	Rmet_4426	-	MmgE/PrpD family protein
805	 64.87	0	874382..875548	-	388	94313352	-	Rmet_4427	-	acyl-CoA dehydrogenase-like protein
806	 65.91	0	875759..876820	+	353	94313353	-	Rmet_4428	-	MaoC-like dehydratase
807	 66.49	0	876820..877941	+	373	94313354	-	Rmet_4429	-	citrate lyase beta subunit-like protein
808	 66.13	0	878316..879806	+	496	94313355	-	Rmet_4430	-	aldehyde dehydrogenase
809	 65.31	0	879843..880724	+	293	94313356	-	Rmet_4431	-	6-phosphogluconate dehydrogenase, NAD-binding
810	 64.68	0	880802..881806	-	334	94313357	-	Rmet_4432	-	IclR family transcriptional regulator
811	 65.96	0	881883..882866	+	327	94313358	-	Rmet_4433	-	hypothetical protein
812	 62.50	0	883073..883552	+	159	94313359	-	Rmet_4434	-	hypothetical protein
813	 66.55	0	883661..884497	-	278	94313360	-	Rmet_4435	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
814	 68.14	+1	884494..885375	-	293	94313361	-	Rmet_4436	-	Beta-lactamase class A-like protein
815	 67.43	+1	885385..886698	-	437	94313362	-	Rmet_4437	-	hypothetical protein
816	 66.57	0	886930..887919	-	329	94313363	-	Rmet_4438	-	hypothetical protein
817	 68.62	+1	887978..889411	-	477	94313364	-	Rmet_4439	-	dihydroorotase
818	 64.54	0	889453..889875	-	140	94313365	-	Rmet_4440	-	endoribonuclease L-PSP
819	 69.14	+1	889891..891144	-	417	94313366	-	Rmet_4441	-	FAD dependent oxidoreductase
820	 69.05	+1	891262..892266	-	334	94313367	-	Rmet_4442	-	LysR family transcriptional regulator
821	 63.35	0	892283..893578	-	431	94313368	-	Rmet_4443	-	hypothetical protein
822	 66.67	0	893643..894614	-	323	94313369	-	Rmet_4444	-	hypothetical protein
823	 67.90	+1	894755..895645	+	296	94313370	-	Rmet_4445	-	LysR family transcriptional regulator
824	 65.57	0	895836..897017	+	393	94313371	-	Rmet_4446	-	L-carnitine dehydratase/bile acid-inducible protein F
825	 63.24	0	897069..897827	+	252	94313372	-	Rmet_4447	-	GntR family transcriptional regulator
826	 64.00	0	897824..898648	+	274	94313373	-	Rmet_4448	-	enoyl-CoA hydratase
827	 64.53	0	898729..899712	+	327	94313374	-	Rmet_4449	-	hypothetical protein
828	 69.93	+1	899808..900419	+	203	94313375	-	Rmet_4450	-	putative transcription regulator protein
829	 64.20	0	900445..900930	-	161	94313376	-	Rmet_4451	-	hypothetical protein
830	 64.23	0	900967..901377	-	136	94313377	-	Rmet_4452	-	response regulator receiver domain-containing protein
831	 66.13	0	901686..902057	+	123	94313378	-	Rmet_4453	-	TraR/DksA family transcriptional regulator
832	 65.77	0	902590..904257	-	555	94313379	-	Rmet_4454	-	AMP-dependent synthetase and ligase
833	 62.31	0	904371..905333	-	320	94313380	-	Rmet_4455	-	hypothetical protein
834	 64.10	0	905685..906074	+	129	94313381	-	Rmet_4456	-	cupin 2, barrel
835	 63.62	0	906137..907120	+	327	94313382	-	Rmet_4457	-	hypothetical protein
836	 65.90	0	907133..908305	+	390	94313383	-	Rmet_4458	-	acyl-CoA dehydrogenase-like protein
837	 65.98	0	908746..909621	-	291	94313384	-	Rmet_4459	-	6-phosphogluconate dehydrogenase, NAD-binding
838	 63.52	0	909685..911814	+	709	94313385	-	Rmet_4460	-	diguanylate cyclase/phosphodiesterase
839	 70.04	+1	911854..912120	-	88	94313386	-	Rmet_4461	-	hypothetical protein
840	 61.00	0	912454..912753	+	99	94313387	-	Rmet_4462	-	hypothetical protein
841	 61.81	0	912884..913912	+	342	94313388	-	Rmet_4463	-	integrase catalytic subunit
842	 62.58	0	913901..914365	-	154	94313389	-	Rmet_4464	-	hypothetical protein
843	 63.77	0	914575..915195	+	206	94313390	-	Rmet_4465	-	two component heavy metal response transcriptional regulator
844	 66.04	0	915252..916694	+	480	94313391	-	Rmet_4466	-	heavy metal sensor signal transduction histidine kinase
845	 60.23	-1	916712..917146	+	144	94313392	-	Rmet_4467	-	3-demethylubiquinone-9 3-methyltransferase
846	 64.37	0	917268..920399	-	1043	94313393	-	Rmet_4468	-	heavy metal efflux pump CzcA
847	 65.66	0	920414..921307	-	297	94313394	-	Rmet_4469	-	secretion protein HlyD
848	 60.42	0	921411..921746	-	111	94313395	-	Rmet_4470	-	TraR/DksA family transcriptional regulator
849	 62.38	0	921763..922626	-	287	94313396	-	Rmet_4471	-	hypothetical protein
850	 59.03	-1	922641..924119	-	492	94313397	-	Rmet_4472	-	sulphate transporter
851	 62.03	0	924533..925093	+	186	94313398	-	Rmet_4473	-	resolvase-like protein
852	 64.98	0	925096..928062	+	988	94313399	-	Rmet_4474	-	transposase Tn3
853	 62.09	0	928099..929277	+	392	94313400	-	Rmet_4475	-	branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein
854	 62.94	0	929382..930239	+	285	94313401	-	Rmet_4476	-	inner-membrane translocator
855	 64.16	0	930239..931237	+	332	94313402	-	Rmet_4477	-	inner-membrane translocator
856	 65.49	0	931234..932001	+	255	94313403	-	Rmet_4478	-	ABC transporter related
857	 62.84	0	931998..932702	+	234	94313404	-	Rmet_4479	-	ABC transporter related
858	 63.97	0	932726..933988	+	420	94313405	-	Rmet_4480	-	amidase, hydantoinase/carbamoylase
859	 64.73	0	934022..935515	+	497	94313406	-	Rmet_4481	-	MlrC-like protein
860	 63.47	0	935555..936148	-	197	94313407	-	Rmet_4482	-	TetR family transcriptional regulator
861	 62.44	0	936224..936649	+	141	94313408	-	Rmet_4483	-	phenylacetic acid degradation-related protein
862	 62.17	0	936755..937399	+	214	94313409	-	Rmet_4484	-	bifunctional deaminase-reductase-like protein
863	 60.65	0	937439..938302	-	287	94313410	-	Rmet_4485	-	hypothetical protein
864	 62.54	0	938866..939786	-	306	94313411	-	Rmet_4486	-	hypothetical protein
865	 65.00	0	939893..940252	-	119	94313412	-	Rmet_4487	-	hypothetical protein
866	 57.21	-1	940909..941775	-	288	94313413	-	Rmet_4488	-	hypothetical protein
867	 58.22	-1	941946..943022	-	358	94313414	-	Rmet_4489	-	zonular occludens toxin
868	 60.23	-1	943022..943285	-	87	94313415	-	Rmet_4490	-	hypothetical protein
869	 53.10	-2	943289..943627	-	112	94313416	-	Rmet_4491	-	hypothetical protein
870	 59.44	-1	943630..945165	-	511	94313417	-	Rmet_4492	-	hypothetical protein
871	 62.35	0	945857..946111	-	84	94313418	-	Rmet_4493	-	hypothetical protein
872	 58.33	-1	946823..947134	-	103	94313419	-	Rmet_4494	-	hypothetical protein
873	 54.13	-2	947221..947571	+	116	94313420	-	Rmet_4495	-	hypothetical protein
63.77	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.