IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.77   STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
736	 66.32	0	806164..807036	-	290	94313283	-	Rmet_4358	-	succinyl-CoA synthetase (ADP-forming) alpha subunit
737	 64.44	0	807038..808249	-	403	94313284	-	Rmet_4359	-	succinyl-CoA synthetase (ADP-forming) beta subunit
738	 63.39	0	808477..810399	+	640	94313285	-	Rmet_4360	-	thiamine pyrophosphate enzyme-like TPP binding region
739	 65.61	0	810454..811686	+	410	94313286	-	Rmet_4361	-	formyl-coenzyme A transferase
740	 63.94	0	811853..813982	+	709	94313287	-	Rmet_4362	-	CoA-binding
741	 65.38	0	814130..814906	+	258	94313288	-	Rmet_4363	-	fumarylacetoacetate (FAA) hydrolase
742	 61.81	0	814973..815281	-	102	94313289	-	Rmet_4364	-	hypothetical protein
743	 61.41	0	815394..816344	-	316	94313290	-	Rmet_4365	-	LysR family transcriptional regulator
744	 64.51	0	816561..817904	+	447	94313291	-	Rmet_4366	-	major facilitator transporter
745	 65.16	0	817937..818866	+	309	94313292	-	Rmet_4367	-	LysR family transcriptional regulator
746	 66.67	0	819085..819303	+	72	94313293	-	Rmet_4368	-	hypothetical protein
747	 62.14	0	819914..821239	+	441	94313294	-	Rmet_4369	-	major facilitator transporter
748	 62.73	0	821395..822411	+	338	94313295	-	Rmet_4370	-	alcohol dehydrogenase GroES-like protein
749	 69.09	+1	822519..823550	-	343	94313296	-	Rmet_4371	-	hypothetical protein
750	 59.70	-1	823748..824422	-	224	94313297	-	Rmet_4372	-	TetR family transcriptional regulator
751	 65.86	0	824651..825022	+	123	94313298	-	Rmet_4373	-	XRE family transcriptional regulator
752	 64.03	0	825478..826806	+	442	94313299	-	Rmet_4374	-	homogentisate 1,2-dioxygenase
753	 64.37	0	826845..828107	+	420	94313300	-	Rmet_4375	-	fumarylacetoacetate hydrolase
754	 65.62	0	828244..829104	+	286	94313301	-	Rmet_4376	-	hypothetical protein
755	 65.90	0	829097..829876	+	259	94313302	-	Rmet_4377	-	phospholipid/glycerol acyltransferase
756	 60.74	0	829863..830132	+	89	94313303	-	Rmet_4378	-	putative acyl carrier protein
757	 62.40	0	830185..830442	+	85	94313304	-	Rmet_4379	-	putative acyl-carrier-protein
758	 67.38	+1	830450..831007	+	185	94313305	-	Rmet_4380	-	hypothetical protein
759	 68.58	+1	831000..832673	+	557	94313306	-	Rmet_4381	-	AMP-dependent synthetase and ligase
760	 64.67	0	832670..833422	+	250	94313307	-	Rmet_4382	-	glycosyl transferase family protein
761	 66.76	0	833419..834450	+	343	94313308	-	Rmet_4383	-	lipid A biosynthesis acyltransferase
762	 60.43	0	834428..834844	+	138	94313309	-	Rmet_4384	-	thioesterase superfamily protein
763	 67.62	+1	834841..835470	+	209	94313310	-	Rmet_4385	-	outer membrane lipoprotein carrier protein LolA
764	 68.78	+1	835490..837850	+	786	94313311	-	Rmet_4386	-	putative lipoprotein transmembrane
765	 63.33	0	837847..839076	+	409	94313312	-	Rmet_4387	-	tryptophan halogenase
766	 69.28	+1	839073..839645	+	190	94313313	-	Rmet_4388	-	hypothetical protein
767	 68.35	+1	839642..840832	+	396	94313314	-	Rmet_4389	-	beta-ketoacyl synthase
768	 66.67	0	840835..841308	+	157	94313315	-	Rmet_4390	-	hypothetical protein
769	 65.57	0	841305..842036	+	243	94313316	fabG	Rmet_4391	-	3-ketoacyl-(acyl-carrier-protein) reductase
770	 67.32	+1	842033..843262	+	409	94313317	-	Rmet_4392	-	3-oxoacyl-(acyl carrier protein) synthase II
771	 68.58	+1	843405..844031	+	208	94313318	-	Rmet_4393	-	4'-phosphopantetheinyl transferase
772	 65.18	0	844038..845048	-	336	94313319	-	Rmet_4394	-	IclR family transcriptional regulator
773	 64.85	0	845066..845560	+	164	94313320	-	Rmet_4395	-	hypothetical protein
774	 63.54	0	845593..846681	-	362	94313321	-	Rmet_4396	-	extracellular solute-binding protein
775	 64.62	0	846678..847460	-	260	94313322	-	Rmet_4397	-	binding-protein-dependent transport systems inner membrane component
776	 65.09	0	847457..848473	-	338	94313323	-	Rmet_4398	-	binding-protein-dependent transport systems inner membrane component
777	 66.12	0	848489..849583	-	364	94313324	-	Rmet_4399	-	spermidine/putrescine ABC transporter ATP-binding subunit
778	 63.60	0	849832..850092	-	86	94313325	-	Rmet_4400	-	hypothetical protein
779	 60.14	-1	850177..850620	+	147	94313326	-	Rmet_4401	-	hypothetical protein
780	 65.15	0	850639..851559	-	306	94313327	-	Rmet_4402	-	hypothetical protein
781	 65.71	0	851634..853619	-	661	94313328	-	Rmet_4403	-	squalene cyclase
782	 63.67	0	853616..854215	-	199	94313329	-	Rmet_4404	-	TetR family transcriptional regulator
783	 63.31	0	854331..854687	+	118	94313330	-	Rmet_4405	-	hypothetical protein
784	 63.11	0	854756..854980	-	74	94313331	-	Rmet_4406	-	Zinc finger, CDGSH-type
785	 64.87	0	855175..855564	+	129	94313332	-	Rmet_4407	-	hypothetical protein
786	 67.39	+1	855908..856876	-	322	94313333	-	Rmet_4408	-	hypothetical protein
787	 65.45	0	857027..857932	-	301	94313334	-	Rmet_4409	-	taurine catabolism dioxygenase TauD/TfdA
788	 65.77	0	857988..859220	-	410	94313335	-	Rmet_4410	-	acyl-CoA dehydrogenase-like protein
789	 68.77	+1	859217..861355	-	712	94313336	-	Rmet_4411	-	CoA-binding
790	 65.91	0	861382..861780	-	132	94313337	-	Rmet_4412	-	hypothetical protein
791	 66.75	0	861782..862951	-	389	94313338	-	Rmet_4413	-	acetyl-CoA acetyltransferase
792	 65.46	0	862962..863876	-	304	94313339	-	Rmet_4414	-	short-chain dehydrogenase/reductase SDR
793	 66.36	0	863924..864886	-	320	94313340	-	Rmet_4415	-	hypothetical protein
794	 66.41	0	865278..866054	+	258	94313341	-	Rmet_4416	-	GntR family transcriptional regulator
795	 62.16	0	866095..866316	-	73	94313342	-	Rmet_4417	-	hypothetical protein
796	 61.81	0	866321..867349	-	342	94313343	-	Rmet_4418	-	integrase catalytic subunit
797	 62.13	0	867357..868172	-	271	94313344	-	Rmet_4419	-	hypothetical protein
798	 66.51	0	868216..869457	-	413	94313345	-	Rmet_4420	-	L-carnitine dehydratase/bile acid-inducible protein F
799	 67.92	+1	869483..870676	-	397	94313346	-	Rmet_4421	-	MmgE/PrpD family protein
800	 61.11	0	870716..870931	-	71	94313347	-	Rmet_4422	-	hypothetical protein
801	 65.59	0	870985..871818	-	277	94313348	-	Rmet_4423	-	ATPase
802	 65.56	0	871815..873254	-	479	94313349	-	Rmet_4424	-	integrase catalytic subunit
803	 64.39	0	873366..873935	-	189	94313350	-	Rmet_4425	-	hypothetical protein
804	 70.61	+1	874037..874366	-	109	94313351	-	Rmet_4426	-	MmgE/PrpD family protein
805	 64.87	0	874382..875548	-	388	94313352	-	Rmet_4427	-	acyl-CoA dehydrogenase-like protein
806	 65.91	0	875759..876820	+	353	94313353	-	Rmet_4428	-	MaoC-like dehydratase
807	 66.49	0	876820..877941	+	373	94313354	-	Rmet_4429	-	citrate lyase beta subunit-like protein
808	 66.13	0	878316..879806	+	496	94313355	-	Rmet_4430	-	aldehyde dehydrogenase
809	 65.31	0	879843..880724	+	293	94313356	-	Rmet_4431	-	6-phosphogluconate dehydrogenase, NAD-binding
810	 64.68	0	880802..881806	-	334	94313357	-	Rmet_4432	-	IclR family transcriptional regulator
811	 65.96	0	881883..882866	+	327	94313358	-	Rmet_4433	-	hypothetical protein
812	 62.50	0	883073..883552	+	159	94313359	-	Rmet_4434	-	hypothetical protein
813	 66.55	0	883661..884497	-	278	94313360	-	Rmet_4435	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
814	 68.14	+1	884494..885375	-	293	94313361	-	Rmet_4436	-	Beta-lactamase class A-like protein
815	 67.43	+1	885385..886698	-	437	94313362	-	Rmet_4437	-	hypothetical protein
816	 66.57	0	886930..887919	-	329	94313363	-	Rmet_4438	-	hypothetical protein
817	 68.62	+1	887978..889411	-	477	94313364	-	Rmet_4439	-	dihydroorotase
818	 64.54	0	889453..889875	-	140	94313365	-	Rmet_4440	-	endoribonuclease L-PSP
819	 69.14	+1	889891..891144	-	417	94313366	-	Rmet_4441	-	FAD dependent oxidoreductase
820	 69.05	+1	891262..892266	-	334	94313367	-	Rmet_4442	-	LysR family transcriptional regulator
821	 63.35	0	892283..893578	-	431	94313368	-	Rmet_4443	-	hypothetical protein
822	 66.67	0	893643..894614	-	323	94313369	-	Rmet_4444	-	hypothetical protein
823	 67.90	+1	894755..895645	+	296	94313370	-	Rmet_4445	-	LysR family transcriptional regulator
824	 65.57	0	895836..897017	+	393	94313371	-	Rmet_4446	-	L-carnitine dehydratase/bile acid-inducible protein F
825	 63.24	0	897069..897827	+	252	94313372	-	Rmet_4447	-	GntR family transcriptional regulator
826	 64.00	0	897824..898648	+	274	94313373	-	Rmet_4448	-	enoyl-CoA hydratase
827	 64.53	0	898729..899712	+	327	94313374	-	Rmet_4449	-	hypothetical protein
828	 69.93	+1	899808..900419	+	203	94313375	-	Rmet_4450	-	putative transcription regulator protein
829	 64.20	0	900445..900930	-	161	94313376	-	Rmet_4451	-	hypothetical protein
830	 64.23	0	900967..901377	-	136	94313377	-	Rmet_4452	-	response regulator receiver domain-containing protein
831	 66.13	0	901686..902057	+	123	94313378	-	Rmet_4453	-	TraR/DksA family transcriptional regulator
832	 65.77	0	902590..904257	-	555	94313379	-	Rmet_4454	-	AMP-dependent synthetase and ligase
833	 62.31	0	904371..905333	-	320	94313380	-	Rmet_4455	-	hypothetical protein
834	 64.10	0	905685..906074	+	129	94313381	-	Rmet_4456	-	cupin 2, barrel
835	 63.62	0	906137..907120	+	327	94313382	-	Rmet_4457	-	hypothetical protein
63.77	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.