IslandPathversion 1.0

IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.77 STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
700	 59.81	-1	770096..771685	+	529	94313247	-	Rmet_4322	-	cytochrome c oxidase, subunit I
701	 62.33	0	771682..772281	+	199	94313248	-	Rmet_4323	-	cytochrome C oxidase, mono-heme subunit/FixO
702	 64.20	0	772297..772905	+	202	94313249	-	Rmet_4324	-	cytochrome c, class I
703	 58.83	-1	772973..773521	+	182	94313250	-	Rmet_4325	-	putative transmembrane protein
704	 57.64	-1	773518..774093	+	191	94313251	-	Rmet_4326	-	putative transmembrane protein
705	 65.72	0	774100..774522	-	140	94313252	-	Rmet_4327	-	hypothetical protein
706	 58.56	-1	774566..775540	-	324	94313253	-	Rmet_4328	-	alpha/beta hydrolase fold
707	 57.88	-1	775625..776068	+	147	94313254	-	Rmet_4329	-	BadM/Rrf2 family transcriptional regulator
708	 60.94	0	776317..777363	+	348	94313255	-	Rmet_4330	-	twin-arginine translocation pathway signal
709	 62.65	0	777370..778140	+	256	94313256	-	Rmet_4331	-	ABC transporter related
710	 61.43	0	778137..779033	+	298	94313257	-	Rmet_4332	-	binding-protein-dependent transport systems inner membrane component
711	 64.22	0	779037..780710	+	557	94313258	-	Rmet_4333	-	amidohydrolase 3
712	 61.61	0	780797..781132	-	111	94313259	-	Rmet_4334	-	4Fe-4S ferredoxin, iron-sulfur binding
713	 64.55	0	781129..782778	-	549	94313260	-	Rmet_4335	-	fumarate reductase/succinate dehydrogenase flavoprotein-like protein
714	 60.76	0	782899..783930	-	343	94313261	-	Rmet_4336	-	fatty acid desaturase
715	 59.33	-1	784145..785152	+	335	94313262	-	Rmet_4337	-	hypothetical protein
716	 65.88	0	785216..786865	+	549	94313263	-	Rmet_4338	-	rhodanese-like protein
717	 62.60	0	786978..787223	+	81	94313264	-	Rmet_4339	-	histidine kinase
718	 59.97	-1	787494..789209	+	571	94313265	-	Rmet_4340	-	malate:quinone oxidoreductase
719	 58.57	-1	789641..790603	-	320	94313266	-	Rmet_4341	-	hypothetical protein
720	 61.94	0	790650..792152	-	500	94313267	-	Rmet_4342	-	argininosuccinate lyase
721	 59.71	-1	792437..793342	-	301	94313268	-	Rmet_4343	-	LysR family transcriptional regulator
722	 58.78	-1	793592..794707	+	371	94313269	-	Rmet_4344	-	porin
723	 55.65	-2	794798..795169	+	123	94313270	-	Rmet_4345	-	hypothetical protein
724	 56.50	-2	796268..796798	-	176	94313271	-	Rmet_4346	-	hypothetical protein
725	 57.06	-1	797085..797594	-	169	94313272	-	Rmet_4347	-	alkylhydroperoxidase AhpD core
726	 62.82	0	797616..798005	-	129	94313273	-	Rmet_4348	-	hypothetical protein
727	 59.26	-1	798109..798459	+	116	94313274	-	Rmet_4349	-	hypothetical protein
728	 54.07	-2	799799..800044	-	81	94313275	-	Rmet_4350	-	UvrD/REP helicase family protein
729	 59.68	-1	800167..800352	+	61	94313276	-	Rmet_4351	-	hypothetical protein
730	 62.17	0	800495..800872	-	125	94313277	-	Rmet_4352	-	hypothetical protein
731	 64.38	0	801188..802060	-	290	94313278	-	Rmet_4353	-	GntR family transcriptional regulator
732	 60.92	0	802128..802979	-	283	94313279	-	Rmet_4354	-	LuxR family transcriptional regulator
733	 62.86	0	803116..803877	-	253	94313280	-	Rmet_4355	-	integral membrane protein TerC
734	 65.58	0	804073..805080	+	335	94313281	-	Rmet_4356	-	2-dehydropantoate 2-reductase
735	 62.66	0	805329..806051	+	240	94313282	-	Rmet_4357	-	GntR family transcriptional regulator
736	 66.32	0	806164..807036	-	290	94313283	-	Rmet_4358	-	succinyl-CoA synthetase (ADP-forming) alpha subunit
737	 64.44	0	807038..808249	-	403	94313284	-	Rmet_4359	-	succinyl-CoA synthetase (ADP-forming) beta subunit
738	 63.39	0	808477..810399	+	640	94313285	-	Rmet_4360	-	thiamine pyrophosphate enzyme-like TPP binding region
739	 65.61	0	810454..811686	+	410	94313286	-	Rmet_4361	-	formyl-coenzyme A transferase
740	 63.94	0	811853..813982	+	709	94313287	-	Rmet_4362	-	CoA-binding
741	 65.38	0	814130..814906	+	258	94313288	-	Rmet_4363	-	fumarylacetoacetate (FAA) hydrolase
742	 61.81	0	814973..815281	-	102	94313289	-	Rmet_4364	-	hypothetical protein
743	 61.41	0	815394..816344	-	316	94313290	-	Rmet_4365	-	LysR family transcriptional regulator
744	 64.51	0	816561..817904	+	447	94313291	-	Rmet_4366	-	major facilitator transporter
745	 65.16	0	817937..818866	+	309	94313292	-	Rmet_4367	-	LysR family transcriptional regulator
746	 66.67	0	819085..819303	+	72	94313293	-	Rmet_4368	-	hypothetical protein
747	 62.14	0	819914..821239	+	441	94313294	-	Rmet_4369	-	major facilitator transporter
748	 62.73	0	821395..822411	+	338	94313295	-	Rmet_4370	-	alcohol dehydrogenase GroES-like protein
749	 69.09	+1	822519..823550	-	343	94313296	-	Rmet_4371	-	hypothetical protein
750	 59.70	-1	823748..824422	-	224	94313297	-	Rmet_4372	-	TetR family transcriptional regulator
751	 65.86	0	824651..825022	+	123	94313298	-	Rmet_4373	-	XRE family transcriptional regulator
752	 64.03	0	825478..826806	+	442	94313299	-	Rmet_4374	-	homogentisate 1,2-dioxygenase
753	 64.37	0	826845..828107	+	420	94313300	-	Rmet_4375	-	fumarylacetoacetate hydrolase
754	 65.62	0	828244..829104	+	286	94313301	-	Rmet_4376	-	hypothetical protein
755	 65.90	0	829097..829876	+	259	94313302	-	Rmet_4377	-	phospholipid/glycerol acyltransferase
756	 60.74	0	829863..830132	+	89	94313303	-	Rmet_4378	-	putative acyl carrier protein
757	 62.40	0	830185..830442	+	85	94313304	-	Rmet_4379	-	putative acyl-carrier-protein
758	 67.38	+1	830450..831007	+	185	94313305	-	Rmet_4380	-	hypothetical protein
759	 68.58	+1	831000..832673	+	557	94313306	-	Rmet_4381	-	AMP-dependent synthetase and ligase
760	 64.67	0	832670..833422	+	250	94313307	-	Rmet_4382	-	glycosyl transferase family protein
761	 66.76	0	833419..834450	+	343	94313308	-	Rmet_4383	-	lipid A biosynthesis acyltransferase
762	 60.43	0	834428..834844	+	138	94313309	-	Rmet_4384	-	thioesterase superfamily protein
763	 67.62	+1	834841..835470	+	209	94313310	-	Rmet_4385	-	outer membrane lipoprotein carrier protein LolA
764	 68.78	+1	835490..837850	+	786	94313311	-	Rmet_4386	-	putative lipoprotein transmembrane
765	 63.33	0	837847..839076	+	409	94313312	-	Rmet_4387	-	tryptophan halogenase
766	 69.28	+1	839073..839645	+	190	94313313	-	Rmet_4388	-	hypothetical protein
767	 68.35	+1	839642..840832	+	396	94313314	-	Rmet_4389	-	beta-ketoacyl synthase
768	 66.67	0	840835..841308	+	157	94313315	-	Rmet_4390	-	hypothetical protein
769	 65.57	0	841305..842036	+	243	94313316	fabG	Rmet_4391	-	3-ketoacyl-(acyl-carrier-protein) reductase
770	 67.32	+1	842033..843262	+	409	94313317	-	Rmet_4392	-	3-oxoacyl-(acyl carrier protein) synthase II
771	 68.58	+1	843405..844031	+	208	94313318	-	Rmet_4393	-	4'-phosphopantetheinyl transferase
772	 65.18	0	844038..845048	-	336	94313319	-	Rmet_4394	-	IclR family transcriptional regulator
773	 64.85	0	845066..845560	+	164	94313320	-	Rmet_4395	-	hypothetical protein
774	 63.54	0	845593..846681	-	362	94313321	-	Rmet_4396	-	extracellular solute-binding protein
775	 64.62	0	846678..847460	-	260	94313322	-	Rmet_4397	-	binding-protein-dependent transport systems inner membrane component
776	 65.09	0	847457..848473	-	338	94313323	-	Rmet_4398	-	binding-protein-dependent transport systems inner membrane component
777	 66.12	0	848489..849583	-	364	94313324	-	Rmet_4399	-	spermidine/putrescine ABC transporter ATP-binding subunit
778	 63.60	0	849832..850092	-	86	94313325	-	Rmet_4400	-	hypothetical protein
779	 60.14	-1	850177..850620	+	147	94313326	-	Rmet_4401	-	hypothetical protein
780	 65.15	0	850639..851559	-	306	94313327	-	Rmet_4402	-	hypothetical protein
781	 65.71	0	851634..853619	-	661	94313328	-	Rmet_4403	-	squalene cyclase
782	 63.67	0	853616..854215	-	199	94313329	-	Rmet_4404	-	TetR family transcriptional regulator
783	 63.31	0	854331..854687	+	118	94313330	-	Rmet_4405	-	hypothetical protein
784	 63.11	0	854756..854980	-	74	94313331	-	Rmet_4406	-	Zinc finger, CDGSH-type
785	 64.87	0	855175..855564	+	129	94313332	-	Rmet_4407	-	hypothetical protein
786	 67.39	+1	855908..856876	-	322	94313333	-	Rmet_4408	-	hypothetical protein
787	 65.45	0	857027..857932	-	301	94313334	-	Rmet_4409	-	taurine catabolism dioxygenase TauD/TfdA
788	 65.77	0	857988..859220	-	410	94313335	-	Rmet_4410	-	acyl-CoA dehydrogenase-like protein
789	 68.77	+1	859217..861355	-	712	94313336	-	Rmet_4411	-	CoA-binding
790	 65.91	0	861382..861780	-	132	94313337	-	Rmet_4412	-	hypothetical protein
791	 66.75	0	861782..862951	-	389	94313338	-	Rmet_4413	-	acetyl-CoA acetyltransferase
792	 65.46	0	862962..863876	-	304	94313339	-	Rmet_4414	-	short-chain dehydrogenase/reductase SDR
793	 66.36	0	863924..864886	-	320	94313340	-	Rmet_4415	-	hypothetical protein
794	 66.41	0	865278..866054	+	258	94313341	-	Rmet_4416	-	GntR family transcriptional regulator
795	 62.16	0	866095..866316	-	73	94313342	-	Rmet_4417	-	hypothetical protein
796	 61.81	0	866321..867349	-	342	94313343	-	Rmet_4418	-	integrase catalytic subunit
797	 62.13	0	867357..868172	-	271	94313344	-	Rmet_4419	-	hypothetical protein
798	 66.51	0	868216..869457	-	413	94313345	-	Rmet_4420	-	L-carnitine dehydratase/bile acid-inducible protein F
799	 67.92	+1	869483..870676	-	397	94313346	-	Rmet_4421	-	MmgE/PrpD family protein
63.77	MEAN

3.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.