IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.77   STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
24	 65.02	0	26857..27768	-	303	94312571	-	Rmet_3639	-	IclR family transcriptional regulator
25	 66.44	0	27939..28805	+	288	94312572	-	Rmet_3640	-	LysR family transcriptional regulator
26	 65.57	0	28877..29149	-	90	94312573	-	Rmet_3641	-	hypothetical protein
27	 64.04	0	29362..29970	-	202	94312574	-	Rmet_3642	-	protein of unknown function YGGT
28	 64.90	0	30063..30572	+	169	94312575	-	Rmet_3643	-	MarR family transcriptional regulator
29	 66.53	0	30732..31472	+	246	94312576	-	Rmet_3644	-	17 kDa surface antigen
30	 65.96	0	31548..32258	-	236	94312577	-	Rmet_3645	-	dienelactone hydrolase
31	 63.81	0	32446..32865	-	139	94312578	-	Rmet_3646	-	putative signal peptide protein
32	 59.90	-1	33171..33377	+	68	94312579	-	Rmet_3647	-	hypothetical protein
33	 64.94	0	33429..35105	-	558	94312580	-	Rmet_3648	-	putative activation/secretion signal peptide protein
34	 71.40	+2	35257..36840	-	527	94312581	-	Rmet_3649	-	hypothetical protein
35	 68.86	+1	37346..38575	+	409	94312582	-	Rmet_3650	-	putative hemagglutinin-related transmembrane protein
36	 57.81	-1	39020..39211	+	63	94312583	-	Rmet_3651	-	Flp/Fap pilin component
37	 66.67	0	39549..40010	+	153	94312584	-	Rmet_3652	-	TadE-like protein
38	 69.69	+1	40085..41044	+	319	94312585	-	Rmet_3653	-	Flp pilus assembly CpaB
39	 65.89	0	41058..42479	+	473	94312586	-	Rmet_3654	-	type II and III secretion system protein
40	 67.23	0	42491..43729	+	412	94312587	-	Rmet_3655	-	response regulator receiver domain-containing protein
41	 64.69	0	43731..45047	+	438	94312588	-	Rmet_3656	-	type II secretion system protein E
42	 67.20	0	45037..45966	+	309	94312589	-	Rmet_3657	-	type II secretion system protein
43	 69.28	+1	45976..47085	+	369	94312590	-	Rmet_3658	-	type II secretion system protein
44	 66.67	0	47086..47907	+	273	94312591	-	Rmet_3659	-	TPR repeat-containing protein
45	 66.67	0	47904..48272	+	122	94312592	-	Rmet_3660	-	putative lipoprotein
46	 64.70	0	48281..50008	+	575	94312593	-	Rmet_3661	-	putative transmembrane protein
47	 66.81	0	50020..51384	+	454	94312594	-	Rmet_3662	-	sigma-54 dependent trancsriptional regulator
48	 67.54	+1	51481..52626	+	381	94312595	-	Rmet_3663	-	exodeoxyribonuclease I subunit D
49	 68.83	+1	52623..55676	+	1017	94312596	-	Rmet_3664	-	exonuclease SbcC, putative
50	 65.07	0	55921..57357	+	478	94312597	-	Rmet_3665	-	hypothetical protein
51	 58.95	-1	57577..57861	+	94	94312598	-	Rmet_3666	-	hypothetical protein
52	 65.47	0	57882..58547	+	221	94312599	-	Rmet_3667	-	3-oxoacid CoA-transferase, subunit A
53	 66.51	0	58576..59223	+	215	94312600	-	Rmet_3668	-	butyryl-CoA:acetate CoA transferase
54	 67.83	+1	59252..60454	+	400	94312601	-	Rmet_3669	-	beta-ketoadipyl CoA thiolase
55	 65.71	0	60714..61445	+	243	94312602	-	Rmet_3670	-	short-chain dehydrogenase/reductase SDR
56	 64.88	0	61549..62553	+	334	94312603	-	Rmet_3671	-	hypothetical protein
57	 64.76	0	62750..62959	-	69	94312604	-	Rmet_3672	-	hypothetical protein
58	 63.51	0	63286..63855	+	189	94312605	-	Rmet_3673	-	PadR family transcriptional regulator
59	 66.46	0	63889..64878	-	329	94312606	-	Rmet_3674	-	2-nitropropane dioxygenase, NPD
60	 67.60	+1	65059..66135	+	358	94312607	-	Rmet_3675	-	phage integrase
61	 60.49	0	66228..67247	+	339	94312608	-	Rmet_3676	-	UDP-galactose 4-epimerase
62	 59.55	-1	67449..67757	-	102	94312609	-	Rmet_3677	-	nucleoid protein H-NS
63	 65.29	0	68309..70126	+	605	94312610	-	Rmet_3678	-	methyl-accepting chemotaxis sensory transducer
64	 68.13	+1	70263..72245	+	660	94312611	-	Rmet_3679	-	diguanylate cyclase/phosphodiesterase
65	 65.10	0	72405..72788	+	127	94312612	-	Rmet_3680	-	response regulator receiver domain-containing protein
66	 61.78	0	72876..73427	+	183	94312613	-	Rmet_3681	-	CheW protein
67	 67.33	+1	73545..75203	+	552	94312614	-	Rmet_3682	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
68	 66.29	0	75242..77083	+	613	94312615	-	Rmet_3683	-	methyl-accepting chemotaxis sensory transducer
69	 64.28	0	77192..77944	+	250	94312616	-	Rmet_3684	-	hypothetical protein
70	 56.92	-1	78343..78660	+	105	94312617	-	Rmet_3685	-	transcriptional activator FlhD
71	 63.04	0	78657..79262	+	201	94312618	-	Rmet_3686	-	transcriptional activator FlhC
72	 62.11	0	79349..80248	+	299	94312619	-	Rmet_3687	-	chemotaxis MotA protein
73	 63.50	0	80262..81239	+	325	94312620	motB	Rmet_3688	-	flagellar motor protein MotB
74	 65.28	0	81300..83315	+	671	94312621	-	Rmet_3689	-	CheA signal transduction histidine kinases
75	 61.62	0	83340..83834	+	164	94312622	-	Rmet_3690	-	CheW protein
76	 64.58	0	83898..84809	+	303	94312623	-	Rmet_3691	-	MCP methyltransferase, CheR-type
77	 63.95	0	84806..85468	+	220	94312624	-	Rmet_3692	-	chemoreceptor glutamine deamidase CheD
78	 66.01	0	85536..86609	+	357	94312625	-	Rmet_3693	-	chemotaxis-specific methylesterase
79	 58.81	-1	86649..87068	+	139	94312626	-	Rmet_3694	-	response regulator receiver domain-containing protein
80	 64.31	0	87081..87716	+	211	94312627	-	Rmet_3695	-	chemotaxis regulator CheZ
81	 65.27	0	87845..89203	+	452	94312628	-	Rmet_3696	-	peptidase M20
82	 66.94	0	89319..90050	+	243	94312629	-	Rmet_3697	-	hypothetical protein
83	 65.44	0	90329..91471	+	380	94312630	flhB	Rmet_3698	-	flagellar biosynthesis protein FlhB
84	 65.76	0	91468..93555	+	695	94312631	flhA	Rmet_3699	-	flagellar biosynthesis protein FlhA
85	 66.79	0	93565..96042	+	825	94312632	flhF	Rmet_3700	-	flagellar biosynthesis regulator FlhF
86	 68.12	+1	96046..96870	+	274	94312633	-	Rmet_3701	-	flagellar biosynthesis protein FlhG
87	 62.34	0	96978..97694	+	238	94312634	-	Rmet_3702	-	sigma 28 (flagella/sporulation)
88	 64.88	0	97694..98140	+	148	94312635	-	Rmet_3703	-	flagellar FlhE
89	 67.31	+1	98326..99417	-	363	94312636	-	Rmet_3704	-	porin
90	 61.99	0	99496..100521	-	341	94312637	-	Rmet_3705	-	amidohydrolase 2
91	 66.58	0	100518..101666	-	382	94312638	-	Rmet_3706	-	methylitaconate delta2-delta3-isomerase
92	 68.63	+1	101838..103058	+	406	94312639	-	Rmet_3707	-	LysR family transcriptional regulator
93	 65.69	0	103228..104553	+	441	94312640	-	Rmet_3708	-	major facilitator transporter
94	 63.81	0	104563..105855	+	430	94312641	-	Rmet_3709	-	protocatechuate 4,5-dioxygenase
95	 63.89	0	105837..106376	+	179	94312642	-	Rmet_3710	-	rubredoxin-type Fe(Cys)4 protein
96	 63.61	0	106666..107253	+	195	94312643	-	Rmet_3711	-	GCN5-related N-acetyltransferase
97	 58.49	-1	107288..107764	-	158	94312644	-	Rmet_3712	-	putative salicylate-5-hydroxylase small oxygenase component oxidoreductase protein
98	 60.64	0	108087..109049	+	320	94312645	-	Rmet_3713	-	LysR family transcriptional regulator
99	 62.19	0	109030..109230	-	66	94312646	-	Rmet_3714	-	hypothetical protein
100	 61.32	0	109285..109602	-	105	94312647	-	Rmet_3715	-	putative signal peptide protein
101	 68.17	+1	109757..110287	+	176	94312648	-	Rmet_3716	-	hypothetical protein
102	 65.29	0	110388..111041	-	217	161621310	-	Rmet_3717	-	dihydropteridine reductase
103	 67.74	+1	111123..111587	-	154	94312650	-	Rmet_3718	-	hypothetical protein
104	 66.12	0	111721..112629	+	302	94312651	-	Rmet_3719	-	LysR family transcriptional regulator
105	 65.70	0	112713..114473	+	586	94312652	-	Rmet_3720	-	sulfate permease
106	 63.39	0	114576..115613	-	345	94312653	-	Rmet_3721	-	hypothetical protein
107	 63.48	0	115800..116270	+	156	94312654	-	Rmet_3722	-	CMP/dCMP deaminase, zinc-binding
108	 64.49	0	116271..118157	-	628	94312655	-	Rmet_3723	-	methyl-accepting chemotaxis sensory transducer
109	 62.07	0	118420..120030	+	536	94312656	-	Rmet_3724	-	EAL-containing signal transduction protein
110	 63.90	0	120087..121424	+	445	94312657	-	Rmet_3725	-	uracil-xanthine permease
111	 63.45	0	121507..122097	-	196	94312658	-	Rmet_3726	-	hypothetical protein
112	 67.17	0	122186..123385	+	399	94312659	-	Rmet_3727	-	acyl-CoA dehydrogenase-like protein
113	 65.88	0	123409..124554	+	381	94312660	-	Rmet_3728	-	acyl-CoA dehydrogenase-like protein
114	 62.66	0	124707..126950	-	747	94312661	-	Rmet_3729	-	isocitrate dehydrogenase, NADP-dependent
115	 65.66	0	127318..128406	-	362	94312662	-	Rmet_3730	-	putative transmembrane protein
116	 67.31	+1	128471..128935	-	154	94312663	-	Rmet_3731	-	FlgN
117	 65.88	0	128943..129323	-	126	94312664	-	Rmet_3732	-	anti-sigma-28 factor, FlgM
118	 69.65	+1	129502..130239	-	245	94312665	flgA	Rmet_3733	-	flagellar basal body P-ring biosynthesis protein FlgA
119	 64.20	0	130518..130922	+	134	94312666	flgB	Rmet_3734	-	flagellar basal body rod protein FlgB
120	 63.73	0	130934..131341	+	135	94312667	-	Rmet_3735	-	flagellar basal-body rod protein FlgC
121	 64.57	0	131383..132051	+	222	94312668	flgD	Rmet_3736	-	flagellar basal body rod modification protein
122	 65.14	0	132125..133372	+	415	94312669	flgE	Rmet_3737	-	flagellar hook protein FlgE
123	 66.80	0	133399..134142	+	247	94312670	flgF	Rmet_3738	-	flagellar basal body rod protein FlgF
63.77	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.