IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.77   STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
671	 60.94	0	736401..738338	+	645	94313218	-	Rmet_4292	-	propionate catabolism, transcriptional regulator PrpR
672	 63.54	0	739854..740780	-	308	94313219	-	Rmet_4293	-	zinc-binding alcohol dehydrogenase
673	 62.50	0	740777..741208	-	143	94313220	-	Rmet_4294	-	hypothetical protein
674	 62.41	0	741235..741657	-	140	94313221	-	Rmet_4295	-	DoxX
675	 63.61	0	741809..742723	+	304	94313222	-	Rmet_4296	-	LysR family transcriptional regulator
676	 64.46	0	742913..744088	-	391	94313223	-	Rmet_4297	-	hypothetical protein
677	 56.57	-2	744752..745048	+	98	94313224	-	Rmet_4298	-	hypothetical protein
678	 56.95	-1	745275..746633	-	452	94313225	-	Rmet_4299	-	C4-dicarboxylate transporter DctA
679	 61.85	0	746749..747993	-	414	94313226	-	Rmet_4300	-	respiratory-chain NADH dehydrogenase domain-containing protein
680	 66.12	0	748013..749662	-	549	94313227	-	Rmet_4301	-	fumarate reductase/succinate dehydrogenase flavoprotein-like protein
681	 62.75	0	749677..750315	-	212	94313228	-	Rmet_4302	-	ferredoxin
682	 59.56	-1	750706..752211	+	501	94313229	-	Rmet_4303	-	anion transporter
683	 56.84	-1	752307..752591	-	94	94313230	-	Rmet_4304	-	hypothetical protein
684	 60.29	0	752864..753208	-	114	94313231	-	Rmet_4305	-	hypothetical protein
685	 63.45	0	753517..754758	-	413	94313232	-	Rmet_4306	-	major facilitator transporter
686	 62.19	0	754837..755439	-	200	94313233	-	Rmet_4307	-	TetR family transcriptional regulator
687	 61.39	0	755590..756555	-	321	94313234	-	Rmet_4308	-	AraC family transcriptional regulator
688	 56.35	-2	756797..757048	+	83	94313235	-	Rmet_4309	-	hypothetical protein
689	 62.70	0	757376..758584	+	402	94313236	-	Rmet_4310	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
690	 61.28	0	758929..759504	-	191	94313237	-	Rmet_4312	-	BadM/Rrf2 family transcriptional regulator
691	 59.10	-1	759630..761189	-	519	94313238	-	Rmet_4313	-	EmrB/QacA family drug resistance transporter
692	 63.60	0	761222..762493	-	423	94313239	-	Rmet_4314	-	secretion protein HlyD
693	 62.84	0	762523..764037	-	504	94313240	-	Rmet_4315	-	RND efflux system, outer membrane lipoprotein, NodT
694	 60.54	0	764307..764747	-	146	94313241	-	Rmet_4316	-	cupin 2, barrel
695	 60.27	0	764756..765193	-	145	94313242	-	Rmet_4317	-	alkylhydroperoxidase AhpD core
696	 62.51	0	765325..766839	-	504	94313243	-	Rmet_4318	-	GntR family transcriptional regulator
697	 62.50	0	766962..767681	+	239	94313244	-	Rmet_4319	-	short-chain dehydrogenase/reductase SDR
698	 63.67	0	767963..768964	+	333	94313245	-	Rmet_4320	-	AraC family transcriptional regulator
699	 64.40	0	768968..769939	+	323	94313246	-	Rmet_4321	-	hypothetical protein
700	 59.81	-1	770096..771685	+	529	94313247	-	Rmet_4322	-	cytochrome c oxidase, subunit I
701	 62.33	0	771682..772281	+	199	94313248	-	Rmet_4323	-	cytochrome C oxidase, mono-heme subunit/FixO
702	 64.20	0	772297..772905	+	202	94313249	-	Rmet_4324	-	cytochrome c, class I
703	 58.83	-1	772973..773521	+	182	94313250	-	Rmet_4325	-	putative transmembrane protein
704	 57.64	-1	773518..774093	+	191	94313251	-	Rmet_4326	-	putative transmembrane protein
705	 65.72	0	774100..774522	-	140	94313252	-	Rmet_4327	-	hypothetical protein
706	 58.56	-1	774566..775540	-	324	94313253	-	Rmet_4328	-	alpha/beta hydrolase fold
707	 57.88	-1	775625..776068	+	147	94313254	-	Rmet_4329	-	BadM/Rrf2 family transcriptional regulator
708	 60.94	0	776317..777363	+	348	94313255	-	Rmet_4330	-	twin-arginine translocation pathway signal
709	 62.65	0	777370..778140	+	256	94313256	-	Rmet_4331	-	ABC transporter related
710	 61.43	0	778137..779033	+	298	94313257	-	Rmet_4332	-	binding-protein-dependent transport systems inner membrane component
711	 64.22	0	779037..780710	+	557	94313258	-	Rmet_4333	-	amidohydrolase 3
712	 61.61	0	780797..781132	-	111	94313259	-	Rmet_4334	-	4Fe-4S ferredoxin, iron-sulfur binding
713	 64.55	0	781129..782778	-	549	94313260	-	Rmet_4335	-	fumarate reductase/succinate dehydrogenase flavoprotein-like protein
714	 60.76	0	782899..783930	-	343	94313261	-	Rmet_4336	-	fatty acid desaturase
715	 59.33	-1	784145..785152	+	335	94313262	-	Rmet_4337	-	hypothetical protein
716	 65.88	0	785216..786865	+	549	94313263	-	Rmet_4338	-	rhodanese-like protein
717	 62.60	0	786978..787223	+	81	94313264	-	Rmet_4339	-	histidine kinase
718	 59.97	-1	787494..789209	+	571	94313265	-	Rmet_4340	-	malate:quinone oxidoreductase
719	 58.57	-1	789641..790603	-	320	94313266	-	Rmet_4341	-	hypothetical protein
720	 61.94	0	790650..792152	-	500	94313267	-	Rmet_4342	-	argininosuccinate lyase
721	 59.71	-1	792437..793342	-	301	94313268	-	Rmet_4343	-	LysR family transcriptional regulator
722	 58.78	-1	793592..794707	+	371	94313269	-	Rmet_4344	-	porin
723	 55.65	-2	794798..795169	+	123	94313270	-	Rmet_4345	-	hypothetical protein
724	 56.50	-2	796268..796798	-	176	94313271	-	Rmet_4346	-	hypothetical protein
725	 57.06	-1	797085..797594	-	169	94313272	-	Rmet_4347	-	alkylhydroperoxidase AhpD core
726	 62.82	0	797616..798005	-	129	94313273	-	Rmet_4348	-	hypothetical protein
727	 59.26	-1	798109..798459	+	116	94313274	-	Rmet_4349	-	hypothetical protein
728	 54.07	-2	799799..800044	-	81	94313275	-	Rmet_4350	-	UvrD/REP helicase family protein
729	 59.68	-1	800167..800352	+	61	94313276	-	Rmet_4351	-	hypothetical protein
730	 62.17	0	800495..800872	-	125	94313277	-	Rmet_4352	-	hypothetical protein
731	 64.38	0	801188..802060	-	290	94313278	-	Rmet_4353	-	GntR family transcriptional regulator
732	 60.92	0	802128..802979	-	283	94313279	-	Rmet_4354	-	LuxR family transcriptional regulator
733	 62.86	0	803116..803877	-	253	94313280	-	Rmet_4355	-	integral membrane protein TerC
734	 65.58	0	804073..805080	+	335	94313281	-	Rmet_4356	-	2-dehydropantoate 2-reductase
735	 62.66	0	805329..806051	+	240	94313282	-	Rmet_4357	-	GntR family transcriptional regulator
736	 66.32	0	806164..807036	-	290	94313283	-	Rmet_4358	-	succinyl-CoA synthetase (ADP-forming) alpha subunit
737	 64.44	0	807038..808249	-	403	94313284	-	Rmet_4359	-	succinyl-CoA synthetase (ADP-forming) beta subunit
738	 63.39	0	808477..810399	+	640	94313285	-	Rmet_4360	-	thiamine pyrophosphate enzyme-like TPP binding region
739	 65.61	0	810454..811686	+	410	94313286	-	Rmet_4361	-	formyl-coenzyme A transferase
740	 63.94	0	811853..813982	+	709	94313287	-	Rmet_4362	-	CoA-binding
741	 65.38	0	814130..814906	+	258	94313288	-	Rmet_4363	-	fumarylacetoacetate (FAA) hydrolase
742	 61.81	0	814973..815281	-	102	94313289	-	Rmet_4364	-	hypothetical protein
743	 61.41	0	815394..816344	-	316	94313290	-	Rmet_4365	-	LysR family transcriptional regulator
744	 64.51	0	816561..817904	+	447	94313291	-	Rmet_4366	-	major facilitator transporter
745	 65.16	0	817937..818866	+	309	94313292	-	Rmet_4367	-	LysR family transcriptional regulator
746	 66.67	0	819085..819303	+	72	94313293	-	Rmet_4368	-	hypothetical protein
747	 62.14	0	819914..821239	+	441	94313294	-	Rmet_4369	-	major facilitator transporter
748	 62.73	0	821395..822411	+	338	94313295	-	Rmet_4370	-	alcohol dehydrogenase GroES-like protein
749	 69.09	+1	822519..823550	-	343	94313296	-	Rmet_4371	-	hypothetical protein
750	 59.70	-1	823748..824422	-	224	94313297	-	Rmet_4372	-	TetR family transcriptional regulator
751	 65.86	0	824651..825022	+	123	94313298	-	Rmet_4373	-	XRE family transcriptional regulator
752	 64.03	0	825478..826806	+	442	94313299	-	Rmet_4374	-	homogentisate 1,2-dioxygenase
753	 64.37	0	826845..828107	+	420	94313300	-	Rmet_4375	-	fumarylacetoacetate hydrolase
754	 65.62	0	828244..829104	+	286	94313301	-	Rmet_4376	-	hypothetical protein
755	 65.90	0	829097..829876	+	259	94313302	-	Rmet_4377	-	phospholipid/glycerol acyltransferase
756	 60.74	0	829863..830132	+	89	94313303	-	Rmet_4378	-	putative acyl carrier protein
757	 62.40	0	830185..830442	+	85	94313304	-	Rmet_4379	-	putative acyl-carrier-protein
758	 67.38	+1	830450..831007	+	185	94313305	-	Rmet_4380	-	hypothetical protein
759	 68.58	+1	831000..832673	+	557	94313306	-	Rmet_4381	-	AMP-dependent synthetase and ligase
760	 64.67	0	832670..833422	+	250	94313307	-	Rmet_4382	-	glycosyl transferase family protein
761	 66.76	0	833419..834450	+	343	94313308	-	Rmet_4383	-	lipid A biosynthesis acyltransferase
762	 60.43	0	834428..834844	+	138	94313309	-	Rmet_4384	-	thioesterase superfamily protein
763	 67.62	+1	834841..835470	+	209	94313310	-	Rmet_4385	-	outer membrane lipoprotein carrier protein LolA
764	 68.78	+1	835490..837850	+	786	94313311	-	Rmet_4386	-	putative lipoprotein transmembrane
765	 63.33	0	837847..839076	+	409	94313312	-	Rmet_4387	-	tryptophan halogenase
766	 69.28	+1	839073..839645	+	190	94313313	-	Rmet_4388	-	hypothetical protein
767	 68.35	+1	839642..840832	+	396	94313314	-	Rmet_4389	-	beta-ketoacyl synthase
768	 66.67	0	840835..841308	+	157	94313315	-	Rmet_4390	-	hypothetical protein
769	 65.57	0	841305..842036	+	243	94313316	fabG	Rmet_4391	-	3-ketoacyl-(acyl-carrier-protein) reductase
770	 67.32	+1	842033..843262	+	409	94313317	-	Rmet_4392	-	3-oxoacyl-(acyl carrier protein) synthase II
63.77	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.