IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.77   STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
610	 59.82	-1	668605..669744	-	379	94313157	-	Rmet_4230	-	porin
611	 46.67	-2	669897..670211	-	104	94313158	-	Rmet_4231	-	hypothetical protein
612	 61.90	0	670270..671214	+	314	94313159	-	Rmet_4232	-	hypothetical protein
613	 63.81	0	671369..672067	+	232	94313160	-	Rmet_4233	-	dimethylmenaquinone methyltransferase
614	 62.09	0	672070..673008	+	312	94313161	-	Rmet_4234	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
615	 60.65	0	673266..673913	+	215	94313162	-	Rmet_4235	-	two component LuxR family transcriptional regulator
616	 60.00	-1	674240..674614	+	124	94313163	-	Rmet_4236	-	hypothetical protein
617	 61.30	0	675277..676338	-	353	94313164	-	Rmet_4237	-	diguanylate phosphodiesterase
618	 59.38	-1	676335..676814	-	159	94313165	-	Rmet_4238	-	hypothetical protein
619	 57.67	-1	677616..678749	-	377	94313166	-	Rmet_4239	-	porin
620	 63.50	0	678901..681555	-	884	94313167	-	Rmet_4240	-	aconitase
621	 61.05	0	681739..682611	+	290	94313168	-	Rmet_4241	-	alpha/beta hydrolase fold
622	 63.34	0	682645..683637	+	330	94313169	-	Rmet_4242	-	hypothetical protein
623	 63.18	0	683604..684521	+	305	94313170	-	Rmet_4243	-	Crp/FNR family transcriptional regulator
624	 61.32	0	684601..685497	+	298	94313171	-	Rmet_4244	-	LysR family transcriptional regulator
625	 58.16	-1	685829..686263	+	144	94313172	-	Rmet_4245	-	hypothetical protein
626	 56.24	-2	686761..687921	+	386	94313173	-	Rmet_4247	-	hypothetical protein
627	 62.75	0	688014..688421	+	135	94313174	-	Rmet_4248	-	hypothetical protein
628	 61.63	0	688862..689119	-	85	94313175	-	Rmet_4249	-	hypothetical protein
629	 62.50	0	689558..690085	+	175	94313176	-	Rmet_4250	-	fimbrial protein
630	 62.68	0	690157..690909	+	250	94313177	-	Rmet_4251	-	pili assembly chaperone
631	 64.28	0	691023..693575	+	850	94313178	-	Rmet_4252	-	fimbrial biogenesis outer membrane usher protein
632	 58.75	-1	693640..694650	+	336	94313179	-	Rmet_4253	-	fimbrial protein
633	 66.28	0	694898..696943	+	681	94313180	-	Rmet_4254	-	periplasmic sensor signal transduction histidine kinase
634	 63.75	0	697161..701417	+	1418	94313181	-	Rmet_4255	-	PAS/PAC sensor hybrid histidine kinase
635	 63.51	0	701574..701795	-	73	94313182	-	Rmet_4256	-	putative transcriptional regulator
636	 63.35	0	701898..702590	+	230	94313183	-	Rmet_4257	-	general substrate transporter
637	 57.67	-1	702643..702831	+	62	94313184	-	Rmet_4258	-	hypothetical protein
638	 59.47	-1	702768..703142	-	124	94313185	-	Rmet_4259	-	isochorismatase hydrolase
639	 63.15	0	703145..704026	-	293	94313186	-	Rmet_4260	-	Pirin-like protein
640	 62.39	0	704211..705122	-	303	94313187	-	Rmet_4261	-	LysR family transcriptional regulator
641	 63.34	0	705208..706260	+	350	94313188	-	Rmet_4262	-	LysR family transcriptional regulator
642	 62.49	0	706269..708947	-	892	94313189	-	Rmet_4263	-	2-oxoacid dehydrogenase subunit E1
643	 62.37	0	709069..709347	+	92	94313190	-	Rmet_4264	-	hypothetical protein
644	 60.84	0	709561..710247	+	228	94313191	-	Rmet_4265	-	TetR family transcriptional regulator
645	 57.67	-1	710253..710552	-	99	94313192	-	Rmet_4266	-	antibiotic biosynthesis monooxygenase
646	 58.72	-1	710786..711427	+	213	94313193	-	Rmet_4267	-	isochorismatase hydrolase
647	 62.53	0	711667..712464	+	265	94313194	-	Rmet_4268	-	citrate synthase
648	 64.94	0	712461..714080	+	539	94313195	-	Rmet_4269	-	AMP-dependent synthetase and ligase
649	 64.15	0	714138..714971	+	277	94313196	-	Rmet_4270	-	intradiol ring-cleavage dioxygenase
650	 67.02	0	714968..715822	-	284	94313197	-	Rmet_4271	-	IclR family transcriptional regulator
651	 65.68	0	715941..716651	+	236	94313198	-	Rmet_4272	-	L-carnitine dehydratase/bile acid-inducible protein F
652	 64.09	0	716690..718123	+	477	94313199	-	Rmet_4273	-	isopropylmalate isomerase large subunit
653	 59.15	-1	718120..718758	+	212	94313200	-	Rmet_4274	-	isopropylmalate isomerase small subunit
654	 61.31	0	718817..719842	+	341	94313201	-	Rmet_4275	-	hypothetical protein
655	 63.09	0	719894..720787	-	297	94313202	-	Rmet_4276	-	secretion protein HlyD
656	 58.22	-1	720787..721011	-	74	94313203	-	Rmet_4277	-	hypothetical protein
657	 64.53	0	721008..722459	-	483	94313204	-	Rmet_4278	-	RND efflux system, outer membrane lipoprotein, NodT
658	 62.55	0	722467..724653	-	728	94313205	-	Rmet_4279	-	fusaric acid resistance protein region
659	 56.85	-1	724662..725048	-	128	94313206	-	Rmet_4280	-	DoxX
660	 62.51	0	725701..726735	-	344	94313207	-	Rmet_4281	-	zinc-binding alcohol dehydrogenase
661	 64.94	0	726891..727757	+	288	94313208	-	Rmet_4282	-	LysR family transcriptional regulator
662	 61.43	0	728442..728918	-	158	94313209	-	Rmet_4283	-	hypothetical protein
663	 58.33	-1	729091..729234	-	47	94313210	-	Rmet_4284	-	entericidin EcnAB
664	 55.80	-2	729771..730184	-	137	94313211	-	Rmet_4285	-	glyoxalase/bleomycin resistance protein/dioxygenase
665	 62.15	0	730249..731310	+	353	94313212	-	Rmet_4286	-	hypothetical protein
666	 58.60	-1	731429..731713	-	94	94313213	-	Rmet_4287	-	rare lipoprotein A
667	 62.96	0	732262..733125	-	287	94313214	-	Rmet_4288	-	short chain dehydrogenase
668	 65.62	0	733298..733969	-	223	94313215	-	Rmet_4289	-	nucleoside-diphosphate-sugar epimerase
669	 61.62	0	733983..734993	-	336	94313216	-	Rmet_4290	-	AraC family transcriptional regulator
670	 60.47	0	735331..736218	-	295	94313217	-	Rmet_4291	-	2,3-dimethylmalate lyase
671	 60.94	0	736401..738338	+	645	94313218	-	Rmet_4292	-	propionate catabolism, transcriptional regulator PrpR
672	 63.54	0	739854..740780	-	308	94313219	-	Rmet_4293	-	zinc-binding alcohol dehydrogenase
673	 62.50	0	740777..741208	-	143	94313220	-	Rmet_4294	-	hypothetical protein
674	 62.41	0	741235..741657	-	140	94313221	-	Rmet_4295	-	DoxX
675	 63.61	0	741809..742723	+	304	94313222	-	Rmet_4296	-	LysR family transcriptional regulator
676	 64.46	0	742913..744088	-	391	94313223	-	Rmet_4297	-	hypothetical protein
677	 56.57	-2	744752..745048	+	98	94313224	-	Rmet_4298	-	hypothetical protein
678	 56.95	-1	745275..746633	-	452	94313225	-	Rmet_4299	-	C4-dicarboxylate transporter DctA
679	 61.85	0	746749..747993	-	414	94313226	-	Rmet_4300	-	respiratory-chain NADH dehydrogenase domain-containing protein
680	 66.12	0	748013..749662	-	549	94313227	-	Rmet_4301	-	fumarate reductase/succinate dehydrogenase flavoprotein-like protein
681	 62.75	0	749677..750315	-	212	94313228	-	Rmet_4302	-	ferredoxin
682	 59.56	-1	750706..752211	+	501	94313229	-	Rmet_4303	-	anion transporter
683	 56.84	-1	752307..752591	-	94	94313230	-	Rmet_4304	-	hypothetical protein
684	 60.29	0	752864..753208	-	114	94313231	-	Rmet_4305	-	hypothetical protein
685	 63.45	0	753517..754758	-	413	94313232	-	Rmet_4306	-	major facilitator transporter
686	 62.19	0	754837..755439	-	200	94313233	-	Rmet_4307	-	TetR family transcriptional regulator
687	 61.39	0	755590..756555	-	321	94313234	-	Rmet_4308	-	AraC family transcriptional regulator
688	 56.35	-2	756797..757048	+	83	94313235	-	Rmet_4309	-	hypothetical protein
689	 62.70	0	757376..758584	+	402	94313236	-	Rmet_4310	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
690	 61.28	0	758929..759504	-	191	94313237	-	Rmet_4312	-	BadM/Rrf2 family transcriptional regulator
691	 59.10	-1	759630..761189	-	519	94313238	-	Rmet_4313	-	EmrB/QacA family drug resistance transporter
692	 63.60	0	761222..762493	-	423	94313239	-	Rmet_4314	-	secretion protein HlyD
693	 62.84	0	762523..764037	-	504	94313240	-	Rmet_4315	-	RND efflux system, outer membrane lipoprotein, NodT
694	 60.54	0	764307..764747	-	146	94313241	-	Rmet_4316	-	cupin 2, barrel
695	 60.27	0	764756..765193	-	145	94313242	-	Rmet_4317	-	alkylhydroperoxidase AhpD core
696	 62.51	0	765325..766839	-	504	94313243	-	Rmet_4318	-	GntR family transcriptional regulator
697	 62.50	0	766962..767681	+	239	94313244	-	Rmet_4319	-	short-chain dehydrogenase/reductase SDR
698	 63.67	0	767963..768964	+	333	94313245	-	Rmet_4320	-	AraC family transcriptional regulator
699	 64.40	0	768968..769939	+	323	94313246	-	Rmet_4321	-	hypothetical protein
700	 59.81	-1	770096..771685	+	529	94313247	-	Rmet_4322	-	cytochrome c oxidase, subunit I
701	 62.33	0	771682..772281	+	199	94313248	-	Rmet_4323	-	cytochrome C oxidase, mono-heme subunit/FixO
702	 64.20	0	772297..772905	+	202	94313249	-	Rmet_4324	-	cytochrome c, class I
703	 58.83	-1	772973..773521	+	182	94313250	-	Rmet_4325	-	putative transmembrane protein
704	 57.64	-1	773518..774093	+	191	94313251	-	Rmet_4326	-	putative transmembrane protein
705	 65.72	0	774100..774522	-	140	94313252	-	Rmet_4327	-	hypothetical protein
706	 58.56	-1	774566..775540	-	324	94313253	-	Rmet_4328	-	alpha/beta hydrolase fold
707	 57.88	-1	775625..776068	+	147	94313254	-	Rmet_4329	-	BadM/Rrf2 family transcriptional regulator
708	 60.94	0	776317..777363	+	348	94313255	-	Rmet_4330	-	twin-arginine translocation pathway signal
709	 62.65	0	777370..778140	+	256	94313256	-	Rmet_4331	-	ABC transporter related
63.77	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.