IslandPathversion 1.0

IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.77 STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
552	 65.00	0	611688..612704	-	338	94313099	-	Rmet_4172	-	hypothetical protein
553	 69.20	+1	612837..613112	-	91	94313100	-	Rmet_4173	-	hypothetical protein
554	 65.04	0	613175..613420	-	81	94313101	-	Rmet_4174	-	hypothetical protein
555	 66.42	0	613530..614756	+	408	94313102	-	Rmet_4175	-	N-acylglucosamine 2-epimerase
556	 66.11	0	614764..615660	-	298	94313103	-	Rmet_4176	-	LysR family transcriptional regulator
557	 63.90	0	615749..617158	+	469	94313104	-	Rmet_4177	-	EmrB/QacA family drug resistance transporter
558	 62.41	0	617197..617337	-	46	94313105	-	Rmet_4178	-	hypothetical protein
559	 64.80	0	617359..617733	-	124	94313106	-	Rmet_4179	-	hypothetical protein
560	 64.01	0	618010..618876	-	288	94313107	-	Rmet_4180	-	LysR family transcriptional regulator
561	 59.06	-1	618973..619353	+	126	94313108	-	Rmet_4181	-	4-oxalocrotonate tautomerase
562	 65.77	0	619619..620290	-	223	94313109	-	Rmet_4182	-	phospholipase/carboxylesterase
563	 61.62	0	620417..620713	-	98	94313110	-	Rmet_4183	-	hypothetical protein
564	 61.81	0	620777..621085	-	102	94313111	-	Rmet_4184	-	hypothetical protein
565	 65.64	0	621286..622359	+	357	94313112	-	Rmet_4185	-	methyl-accepting chemotaxis sensory transducer
566	 66.32	0	622377..623246	-	289	94313113	-	Rmet_4186	-	hypothetical protein
567	 63.86	0	623703..624200	+	165	94313114	-	Rmet_4187	-	hypothetical protein
568	 62.74	0	624421..625056	+	211	94313115	-	Rmet_4188	-	TetR family transcriptional regulator
569	 68.34	+1	625103..625879	-	258	94313116	-	Rmet_4189	-	alpha/beta fold family hydrolase
570	 64.15	0	625876..626907	-	343	94313117	-	Rmet_4190	-	hypothetical protein
571	 66.01	0	626953..627867	-	304	94313118	-	Rmet_4191	-	LysR family transcriptional regulator
572	 66.34	0	628150..630294	-	714	94313119	-	Rmet_4192	-	twin-arginine translocation pathway signal
573	 66.67	0	631021..631506	+	161	94313120	-	Rmet_4193	-	hypothetical protein
574	 67.54	+1	631532..632680	-	382	94313121	-	Rmet_4194	-	alanine racemase-like protein
575	 64.28	0	632898..634445	+	515	94313122	-	Rmet_4195	-	methyl-accepting chemotaxis sensory transducer
576	 63.64	0	634495..635088	-	197	94313123	-	Rmet_4196	-	DSBA oxidoreductase
577	 61.87	0	635158..636054	-	298	94313124	-	Rmet_4197	-	short-chain dehydrogenase/reductase SDR
578	 65.32	0	636079..636822	+	247	94313125	-	Rmet_4198	-	PadR family transcriptional regulator
579	 66.42	0	636819..637631	+	270	94313126	-	Rmet_4199	-	FAD-binding 9, siderophore-interacting
580	 62.69	0	637731..638132	+	133	94313127	-	Rmet_4200	-	hypothetical protein
581	 63.38	0	638276..639493	+	405	94313128	-	Rmet_4201	-	aminotransferase
582	 65.43	0	639562..640449	-	295	94313129	-	Rmet_4202	-	LysR family transcriptional regulator
583	 65.48	0	640550..641557	+	335	94313130	-	Rmet_4203	-	hypothetical protein
584	 64.91	0	641651..642388	+	245	94313131	-	Rmet_4204	-	LmbE-like protein
585	 65.69	0	642385..643098	+	237	94313132	-	Rmet_4205	-	hypothetical protein
586	 65.30	0	643210..644160	+	316	94313133	-	Rmet_4206	-	LysR family transcriptional regulator
587	 61.81	0	644570..645598	+	342	94313134	-	Rmet_4207	-	integrase catalytic subunit
588	 64.07	0	645587..645856	-	89	94313135	-	Rmet_4208	-	hypothetical protein
589	 64.55	0	645853..646230	-	125	94313136	-	Rmet_4209	-	hypothetical protein
590	 65.62	0	646549..647982	+	477	94313137	-	Rmet_4210	-	tricarballylate dehydrogenase
591	 66.41	0	647969..649141	+	390	94313138	-	Rmet_4211	-	citrate utilization protein B
592	 63.24	0	649184..649972	+	262	94313139	-	Rmet_4212	-	class II aldolase/adducin-like protein
593	 64.12	0	650173..651153	+	326	94313140	-	Rmet_4213	-	hypothetical protein
594	 65.89	0	651163..652188	+	341	94313141	-	Rmet_4214	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
595	 66.00	0	652302..652754	+	150	94313142	-	Rmet_4215	-	response regulator receiver domain-containing protein
596	 64.22	0	652761..654557	-	598	94313143	-	Rmet_4216	-	dihydrolipoamide dehydrogenase
597	 65.28	0	654759..655406	+	215	94313144	-	Rmet_4217	-	hypothetical protein
598	 65.57	0	655420..656058	-	212	94313145	-	Rmet_4218	-	lysine exporter protein LysE/YggA
599	 66.55	0	656172..657023	+	283	94313146	-	Rmet_4219	-	LysR family transcriptional regulator
600	 64.55	0	657201..658097	+	298	94313147	-	Rmet_4220	-	alpha/beta hydrolase fold
601	 62.26	0	658812..659900	+	362	94313148	-	Rmet_4221	-	porin
602	 63.30	0	660206..661006	+	266	94313149	-	Rmet_4222	-	IclR family transcriptional regulator
603	 62.89	0	661424..662377	+	317	94313150	-	Rmet_4223	-	hypothetical protein
604	 61.65	0	662374..663528	+	384	94313151	-	Rmet_4224	-	L-carnitine dehydratase/bile acid-inducible protein F
605	 60.70	0	663525..664328	+	267	94313152	-	Rmet_4225	-	enoyl-CoA hydratase
606	 58.55	-1	664357..665292	+	311	94313153	-	Rmet_4226	-	LysR family transcriptional regulator
607	 61.42	0	665493..665816	-	107	94313154	-	Rmet_4227	-	hypothetical protein
608	 59.95	-1	666235..667335	-	366	94313155	-	Rmet_4228	-	IS4 family transposase
609	 60.03	-1	667593..668240	-	215	94313156	-	Rmet_4229	-	two component LuxR family transcriptional regulator
610	 59.82	-1	668605..669744	-	379	94313157	-	Rmet_4230	-	porin
611	 46.67	-2	669897..670211	-	104	94313158	-	Rmet_4231	-	hypothetical protein
612	 61.90	0	670270..671214	+	314	94313159	-	Rmet_4232	-	hypothetical protein
613	 63.81	0	671369..672067	+	232	94313160	-	Rmet_4233	-	dimethylmenaquinone methyltransferase
614	 62.09	0	672070..673008	+	312	94313161	-	Rmet_4234	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
615	 60.65	0	673266..673913	+	215	94313162	-	Rmet_4235	-	two component LuxR family transcriptional regulator
616	 60.00	-1	674240..674614	+	124	94313163	-	Rmet_4236	-	hypothetical protein
617	 61.30	0	675277..676338	-	353	94313164	-	Rmet_4237	-	diguanylate phosphodiesterase
618	 59.38	-1	676335..676814	-	159	94313165	-	Rmet_4238	-	hypothetical protein
619	 57.67	-1	677616..678749	-	377	94313166	-	Rmet_4239	-	porin
620	 63.50	0	678901..681555	-	884	94313167	-	Rmet_4240	-	aconitase
621	 61.05	0	681739..682611	+	290	94313168	-	Rmet_4241	-	alpha/beta hydrolase fold
622	 63.34	0	682645..683637	+	330	94313169	-	Rmet_4242	-	hypothetical protein
623	 63.18	0	683604..684521	+	305	94313170	-	Rmet_4243	-	Crp/FNR family transcriptional regulator
624	 61.32	0	684601..685497	+	298	94313171	-	Rmet_4244	-	LysR family transcriptional regulator
625	 58.16	-1	685829..686263	+	144	94313172	-	Rmet_4245	-	hypothetical protein
626	 56.24	-2	686761..687921	+	386	94313173	-	Rmet_4247	-	hypothetical protein
627	 62.75	0	688014..688421	+	135	94313174	-	Rmet_4248	-	hypothetical protein
628	 61.63	0	688862..689119	-	85	94313175	-	Rmet_4249	-	hypothetical protein
629	 62.50	0	689558..690085	+	175	94313176	-	Rmet_4250	-	fimbrial protein
630	 62.68	0	690157..690909	+	250	94313177	-	Rmet_4251	-	pili assembly chaperone
631	 64.28	0	691023..693575	+	850	94313178	-	Rmet_4252	-	fimbrial biogenesis outer membrane usher protein
632	 58.75	-1	693640..694650	+	336	94313179	-	Rmet_4253	-	fimbrial protein
633	 66.28	0	694898..696943	+	681	94313180	-	Rmet_4254	-	periplasmic sensor signal transduction histidine kinase
634	 63.75	0	697161..701417	+	1418	94313181	-	Rmet_4255	-	PAS/PAC sensor hybrid histidine kinase
635	 63.51	0	701574..701795	-	73	94313182	-	Rmet_4256	-	putative transcriptional regulator
636	 63.35	0	701898..702590	+	230	94313183	-	Rmet_4257	-	general substrate transporter
637	 57.67	-1	702643..702831	+	62	94313184	-	Rmet_4258	-	hypothetical protein
638	 59.47	-1	702768..703142	-	124	94313185	-	Rmet_4259	-	isochorismatase hydrolase
639	 63.15	0	703145..704026	-	293	94313186	-	Rmet_4260	-	Pirin-like protein
640	 62.39	0	704211..705122	-	303	94313187	-	Rmet_4261	-	LysR family transcriptional regulator
641	 63.34	0	705208..706260	+	350	94313188	-	Rmet_4262	-	LysR family transcriptional regulator
642	 62.49	0	706269..708947	-	892	94313189	-	Rmet_4263	-	2-oxoacid dehydrogenase subunit E1
643	 62.37	0	709069..709347	+	92	94313190	-	Rmet_4264	-	hypothetical protein
644	 60.84	0	709561..710247	+	228	94313191	-	Rmet_4265	-	TetR family transcriptional regulator
645	 57.67	-1	710253..710552	-	99	94313192	-	Rmet_4266	-	antibiotic biosynthesis monooxygenase
646	 58.72	-1	710786..711427	+	213	94313193	-	Rmet_4267	-	isochorismatase hydrolase
647	 62.53	0	711667..712464	+	265	94313194	-	Rmet_4268	-	citrate synthase
648	 64.94	0	712461..714080	+	539	94313195	-	Rmet_4269	-	AMP-dependent synthetase and ligase
649	 64.15	0	714138..714971	+	277	94313196	-	Rmet_4270	-	intradiol ring-cleavage dioxygenase
650	 67.02	0	714968..715822	-	284	94313197	-	Rmet_4271	-	IclR family transcriptional regulator
651	 65.68	0	715941..716651	+	236	94313198	-	Rmet_4272	-	L-carnitine dehydratase/bile acid-inducible protein F
63.77	MEAN

3.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.