IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.77   STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
428	 64.65	0	467714..468703	+	329	94312975	-	Rmet_4047	-	hypothetical protein
429	 65.90	0	468703..469221	+	172	94312976	-	Rmet_4048	-	hypothetical protein
430	 67.14	0	469238..469447	-	69	94312977	-	Rmet_4049	-	hypothetical protein
431	 66.87	0	469455..470447	-	330	94312978	-	Rmet_4050	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
432	 65.18	0	470503..471174	-	223	94312979	-	Rmet_4051	-	glutathione S-transferase-like protein
433	 66.78	0	471271..472173	-	300	94312980	-	Rmet_4052	-	LysR family transcriptional regulator
434	 64.64	0	472186..473271	-	361	94312981	-	Rmet_4053	-	hypothetical protein
435	 70.05	+1	473370..474404	-	344	94312982	-	Rmet_4054	-	cytochrome C biogenesis protein
436	 66.12	0	474397..474948	-	183	94312983	-	Rmet_4055	-	periplasmic protein thiol
437	 68.58	+1	474945..476987	-	680	94312984	-	Rmet_4056	-	cytochrome c-type biogenesis protein CcmF
438	 65.11	0	476984..477433	-	149	94312985	-	Rmet_4057	-	cytochrome c-type biogenesis protein CcmE
439	 68.33	+1	477573..478352	-	259	94312986	-	Rmet_4058	-	heme exporter protein CcmC
440	 68.16	+1	478357..479025	-	222	94312987	-	Rmet_4059	-	heme exporter protein CcmB
441	 69.18	+1	479022..479657	-	211	94312988	-	Rmet_4060	-	cytochrome c biogenesis protein CcmA
442	 61.90	0	479661..480248	-	195	94312989	-	Rmet_4061	-	periplasmic nitrate reductase subunit NapC
443	 63.41	0	480269..480760	-	163	94312990	-	Rmet_4062	-	periplasmic nitrate reductase subunit NapB
444	 63.26	0	480778..483273	-	831	94312991	-	Rmet_4063	-	nitrate reductase
445	 62.42	0	483254..483583	-	109	94312992	-	Rmet_4064	-	periplasmic nitrate reductase chaperone NapD
446	 58.79	-1	483679..483843	-	54	94312993	-	Rmet_4065	-	periplasmic nitrate reductase NapE
447	 63.50	0	483858..484742	+	294	94312994	-	Rmet_4066	-	methyltransferase type 11
448	 66.36	0	484715..485692	-	325	94312995	-	Rmet_4067	-	twin-arginine translocation pathway signal
449	 64.94	0	485742..487481	-	579	94312996	-	Rmet_4068	-	acyl-CoA synthetase
450	 68.20	+1	487560..490940	-	1126	94312997	-	Rmet_4069	-	carbamoyl-phosphate synthase L chain, ATP-binding
451	 67.34	+1	491048..491941	-	297	94312998	-	Rmet_4070	-	LysR family transcriptional regulator
452	 66.16	0	492054..493229	+	391	94312999	-	Rmet_4071	-	L-carnitine dehydratase/bile acid-inducible protein F
453	 62.55	0	493265..493726	+	153	94313000	-	Rmet_4072	-	hypothetical protein
454	 65.47	0	493785..494783	+	332	94313001	-	Rmet_4073	-	hypothetical protein
455	 67.27	0	494826..495986	+	386	94313002	-	Rmet_4074	-	acyl-CoA dehydrogenase-like protein
456	 66.47	0	496166..497161	+	331	94313003	-	Rmet_4075	-	acyl-CoA dehydrogenase-like protein
457	 64.28	0	497224..498018	-	264	94313004	-	Rmet_4076	-	short-chain dehydrogenase/reductase SDR
458	 60.86	0	498208..499551	-	447	94313005	-	Rmet_4077	-	TRAP transporter solute receptor TAXI family protein
459	 63.94	0	499905..501332	-	475	94313006	-	Rmet_4078	-	major facilitator transporter
460	 64.06	0	502667..503050	+	127	94313007	-	Rmet_4080	-	hypothetical protein
461	 60.44	0	503243..503692	-	149	94313008	-	Rmet_4081	-	hypothetical protein
462	 62.24	0	503870..504163	-	97	94313009	-	Rmet_4082	-	hypothetical protein
463	 62.11	0	504259..504543	-	94	94313010	-	Rmet_4083	-	hypothetical protein
464	 64.07	0	504646..506106	+	486	94313011	-	Rmet_4084	-	alkaline phosphatase
465	 64.53	0	506142..507545	+	467	94313012	-	Rmet_4085	-	alkaline phosphatase
466	 64.00	0	507636..508385	+	249	94313013	-	Rmet_4086	-	putative signal peptide protein
467	 64.01	0	508446..509048	-	200	94313014	-	Rmet_4087	-	hypothetical protein
468	 64.67	0	509045..510697	-	550	94313015	-	Rmet_4088	-	hypothetical protein
469	 65.09	0	510675..511946	-	423	94313016	-	Rmet_4089	-	hypothetical protein
470	 64.98	0	512206..512619	-	137	94313017	-	Rmet_4090	-	MerR family transcriptional regulator
471	 65.80	0	512688..513950	+	420	94313018	-	Rmet_4091	-	NADH:flavin oxidoreductase/NADH oxidase
472	 65.36	0	513979..514896	-	305	94313019	-	Rmet_4092	-	LysR family transcriptional regulator
473	 64.95	0	515077..515775	+	232	94313020	-	Rmet_4093	-	Pirin-like protein
474	 61.70	0	515828..516250	+	140	94313021	-	Rmet_4094	-	DoxX
475	 60.66	0	516301..516666	+	121	94313022	-	Rmet_4095	-	hypothetical protein
476	 64.17	0	516755..517354	+	199	94313023	-	Rmet_4096	-	TrpR binding protein WrbA
477	 63.56	0	517480..518604	-	374	94313024	-	Rmet_4097	-	porin
478	 64.14	0	518700..519410	+	236	94313025	-	Rmet_4098	-	hypothetical protein
479	 65.70	0	519497..520732	+	411	94313026	-	Rmet_4099	-	L-carnitine dehydratase/bile acid-inducible protein F
480	 64.04	0	520741..522378	+	545	94313027	-	Rmet_4100	-	enoyl-CoA hydratase/isomerase
481	 63.73	0	522426..523412	+	328	94313028	-	Rmet_4101	-	hypothetical protein
482	 62.89	0	523512..524147	+	211	94313029	-	Rmet_4102	-	TetR family transcriptional regulator
483	 64.14	0	524155..525264	+	369	94313030	-	Rmet_4103	-	NADH:flavin oxidoreductase/NADH oxidase
484	 65.06	0	525533..527518	-	661	94313031	-	Rmet_4104	-	sigma-54 dependent trancsriptional regulator
485	 63.95	0	527820..529988	+	722	94313032	-	Rmet_4105	-	acetone carboxylase, beta subunit
486	 62.37	0	530000..532324	+	774	94313033	-	Rmet_4106	-	acetone carboxylase, alpha subunit
487	 60.98	0	532348..532857	+	169	94313034	-	Rmet_4107	-	acetone carboxylase, gamma subunit
488	 62.68	0	533037..533813	-	258	94313035	-	Rmet_4108	-	hypothetical protein
489	 64.08	0	533859..534863	-	334	94313036	-	Rmet_4109	-	hypothetical protein
490	 62.60	0	534973..535611	+	212	94313037	-	Rmet_4110	-	transcriptional regulator
491	 62.10	0	535751..536275	+	174	94313038	-	Rmet_4111	-	MOSC domain-containing protein
492	 66.14	0	536275..537228	+	317	94313039	-	Rmet_4112	-	oxidoreductase FAD-binding region
493	 65.74	0	537398..538258	+	286	94313040	-	Rmet_4113	-	hypothetical protein
494	 64.82	0	538295..539161	+	288	94313041	pdxK	Rmet_4114	-	pyridoxal kinase
495	 65.08	0	539166..539417	+	83	94313042	-	Rmet_4115	-	hypothetical protein
496	 64.56	0	539475..540329	-	284	94313043	-	Rmet_4116	-	phosphatidylserine decarboxylase
497	 65.90	0	540499..541794	-	431	94313044	-	Rmet_4117	-	GntR family transcriptional regulator
498	 63.49	0	541873..542124	-	83	94313045	-	Rmet_4118	-	hypothetical protein
499	 64.16	0	542206..542643	+	145	94313046	-	Rmet_4119	-	hypothetical protein
500	 67.75	+1	542842..544224	+	460	94313047	-	Rmet_4120	-	outer membrane efflux protein
501	 65.97	0	544227..545381	+	384	94313048	-	Rmet_4121	-	secretion protein HlyD
502	 61.81	0	545466..546494	-	342	94313049	-	Rmet_4122	-	integrase catalytic subunit
503	 64.39	0	546539..549610	+	1023	94313050	-	Rmet_4123	-	heavy metal efflux pump CzcA
504	 68.27	+1	549712..550086	+	124	94313051	-	Rmet_4124	-	hypothetical protein
505	 62.65	0	550235..550732	+	165	94313052	-	Rmet_4125	-	hypothetical protein
506	 67.14	0	550827..551459	+	210	94313053	-	Rmet_4126	-	nitrogen fixation protein NifQ, putative
507	 66.67	0	551518..551862	-	114	94313054	-	Rmet_4127	-	hypothetical protein
508	 71.51	+2	552077..553006	+	309	94313055	-	Rmet_4128	-	hypothetical protein
509	 70.39	+1	553023..554606	+	527	94313056	-	Rmet_4129	-	hypothetical protein
510	 66.15	0	554633..558094	+	1153	94313057	dnaE2	Rmet_4130	-	error-prone DNA polymerase
511	 60.40	0	558373..559026	-	217	94313058	-	Rmet_4131	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
512	 70.11	+1	559200..560333	-	377	94313059	-	Rmet_4132	-	branched-chain alpha-keto acid dehydrogenase subunit E2
513	 69.72	+1	560350..561330	-	326	94313060	-	Rmet_4133	-	transketolase, central region
514	 67.03	0	561323..562426	-	367	94313061	-	Rmet_4134	-	dehydrogenase, E1 component
515	 67.73	+1	562614..563084	-	156	94313062	-	Rmet_4135	-	hypothetical protein
516	 64.51	0	563265..564191	+	308	94313063	-	Rmet_4136	-	taurine catabolism dioxygenase TauD/TfdA
517	 62.38	0	564241..565266	+	341	94313064	-	Rmet_4137	-	putative periplasmic protein
518	 67.26	0	565268..566107	+	279	94313065	-	Rmet_4138	-	ABC transporter related
519	 67.12	0	566146..567024	+	292	94313066	-	Rmet_4139	-	binding-protein-dependent transport systems inner membrane component
520	 67.84	+1	567109..567876	+	255	94313067	-	Rmet_4140	-	methyltransferase type 11
521	 69.11	+1	567910..569136	-	408	94313068	-	Rmet_4141	-	hypothetical protein
522	 68.60	+1	569339..570115	+	258	94313069	-	Rmet_4142	-	IclR family transcriptional regulator
523	 67.15	0	570267..571496	+	409	94313070	-	Rmet_4143	-	diguanylate cyclase
524	 67.84	+1	571539..572393	-	284	94313071	-	Rmet_4144	-	citrate synthase
525	 66.27	0	572390..573634	-	414	94313072	-	Rmet_4145	-	L-carnitine dehydratase/bile acid-inducible protein F
526	 69.12	+1	573627..574646	-	339	94313073	-	Rmet_4146	-	hypothetical protein
527	 70.52	+1	574963..575610	-	215	94313074	-	Rmet_4147	-	hypothetical protein
63.77	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.