IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.77   STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
375	 64.10	0	416598..416831	+	77	94312922	-	Rmet_3994	-	hypothetical protein
376	 64.99	0	416838..419162	-	774	94312923	-	Rmet_3995	-	glycoside hydrolase family protein
377	 62.51	0	419370..420980	+	536	94312924	mdoG	Rmet_3996	-	glucan biosynthesis protein G
378	 62.34	0	420993..421223	-	76	94312925	-	Rmet_3997	-	hypothetical protein
379	 63.85	0	421297..422007	-	236	94312926	-	Rmet_3998	-	hypothetical protein
380	 62.73	0	422017..424482	-	821	94312927	-	Rmet_3999	-	TonB-dependent siderophore receptor
381	 69.31	+1	424579..425523	-	314	94312928	-	Rmet_4000	-	FecR family protein
382	 64.31	0	425553..426062	-	169	94312929	-	Rmet_4001	-	sigma-24 (FecI-like)
383	 63.54	0	426300..427514	-	404	94312930	-	Rmet_4002	-	response regulator receiver/diguanylate phosphodiesterase
384	 60.63	0	427710..428438	+	242	94312931	-	Rmet_4003	-	aspartate racemase
385	 64.51	0	429029..430048	+	339	94312932	-	Rmet_4004	-	integrase catalytic subunit
386	 55.48	-2	430085..430987	+	300	94312933	-	Rmet_4005	-	fimbrial protein
387	 61.79	0	431115..431750	-	211	94312934	-	Rmet_4006	-	hypothetical protein
388	 65.63	0	431774..432160	-	128	94312935	-	Rmet_4007	-	protein of unknown function DUF861, cupin_3
389	 61.38	0	432226..432717	-	163	94312936	-	Rmet_4008	-	PilT protein-like protein
390	 61.11	0	432733..433110	-	125	94312937	-	Rmet_4009	-	hypothetical protein
391	 67.34	+1	433210..433800	-	196	94312938	-	Rmet_4010	-	shikimate kinase
392	 66.30	0	433844..435223	-	459	94312939	-	Rmet_4011	-	major facilitator transporter
393	 68.97	+1	435502..436455	-	317	94312940	-	Rmet_4012	-	LysR family transcriptional regulator
394	 64.85	0	436561..437274	+	237	94312941	-	Rmet_4013	-	protocatechuate 3,4-dioxygenase, beta subunit
395	 68.25	+1	437279..437848	+	189	94312942	-	Rmet_4014	-	protocatechuate 3,4-dioxygenase, alpha subunit
396	 68.36	+1	437853..439325	+	490	94312943	-	Rmet_4015	-	3-carboxy-cis,cis-muconate cycloisomerase
397	 65.56	0	439359..440537	+	392	94312944	-	Rmet_4016	-	3-oxoadipate enol-lactonase / 4-carboxymuconolactone decarboxylase
398	 65.59	0	440541..441470	-	309	94312945	-	Rmet_4017	-	AraC family transcriptional regulator
399	 64.16	0	441598..442794	+	398	94312946	-	Rmet_4018	-	4-hydroxybenzoate 3-monooxygenase
400	 66.03	0	442961..443740	+	259	94312947	-	Rmet_4019	-	exopolyphosphatase / 3'-nucleotidase / 5'-nucleotidase
401	 63.97	0	443865..444161	+	98	94312948	-	Rmet_4020	-	hypothetical protein
402	 62.09	0	444158..444943	-	261	94312949	-	Rmet_4021	-	NAD(P)H dehydrogenase (quinone)
403	 67.22	0	445037..445933	+	298	94312950	-	Rmet_4022	-	LysR family transcriptional regulator
404	 64.95	0	446056..446463	-	135	94312951	-	Rmet_4023	-	hypothetical protein
405	 64.29	0	446504..446839	-	111	94312952	-	Rmet_4024	-	hypothetical protein
406	 67.19	0	446942..448090	+	382	94312953	-	Rmet_4025	-	major facilitator transporter
407	 66.25	0	448155..448874	-	239	94312954	-	Rmet_4026	-	putative periplasmic ligand-binding sensor protein
408	 63.85	0	449007..449963	+	318	94312955	-	Rmet_4027	-	prolyl aminopeptidase
409	 60.67	0	449997..450296	+	99	94312956	-	Rmet_4028	-	hypothetical protein
410	 64.91	0	450360..452858	-	832	94312957	-	Rmet_4029	-	MscS mechanosensitive ion channel
411	 61.52	0	453124..453531	+	135	94312958	-	Rmet_4030	-	glyoxalase/bleomycin resistance protein/dioxygenase
412	 60.00	-1	453528..453917	+	129	94312959	-	Rmet_4031	-	cytochrome c, class I
413	 66.67	0	454002..454319	-	105	94312960	-	Rmet_4032	-	hypothetical protein
414	 67.69	+1	454357..455337	-	326	94312961	-	Rmet_4033	-	LysR family transcriptional regulator
415	 61.31	0	455555..455890	+	111	94312962	-	Rmet_4034	-	peptidase
416	 58.12	-1	455947..456543	+	198	94312963	-	Rmet_4035	-	phosphoesterase, PA-phosphatase related
417	 61.94	0	456614..457396	+	260	94312964	-	Rmet_4036	-	hypothetical protein
418	 59.33	-1	457426..457875	+	149	94312965	-	Rmet_4037	-	putative signal peptide protein
419	 62.85	0	457885..458643	+	252	94312966	-	Rmet_4038	-	hypothetical protein
420	 62.16	0	458666..459331	+	221	94312967	-	Rmet_4039	-	two component transcriptional regulator
421	 60.44	0	459328..460659	+	443	94312968	-	Rmet_4040	-	periplasmic sensor signal transduction histidine kinase
422	 55.56	-2	460688..461119	+	143	94312969	-	Rmet_4041	-	hypothetical protein
423	 61.30	0	461186..461800	-	204	94312970	-	Rmet_4042	-	resolvase-like protein
424	 61.66	0	461861..463078	-	405	94312971	-	Rmet_4043	-	TniQ
425	 64.03	0	463075..463983	-	302	94312972	-	Rmet_4044	-	TniB
426	 64.51	0	463986..465704	-	572	94312973	-	Rmet_4045	-	integrase catalytic subunit
427	 68.80	+1	465782..467656	+	624	94312974	-	Rmet_4046	-	gamma-glutamyltransferase 2
428	 64.65	0	467714..468703	+	329	94312975	-	Rmet_4047	-	hypothetical protein
429	 65.90	0	468703..469221	+	172	94312976	-	Rmet_4048	-	hypothetical protein
430	 67.14	0	469238..469447	-	69	94312977	-	Rmet_4049	-	hypothetical protein
431	 66.87	0	469455..470447	-	330	94312978	-	Rmet_4050	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
432	 65.18	0	470503..471174	-	223	94312979	-	Rmet_4051	-	glutathione S-transferase-like protein
433	 66.78	0	471271..472173	-	300	94312980	-	Rmet_4052	-	LysR family transcriptional regulator
434	 64.64	0	472186..473271	-	361	94312981	-	Rmet_4053	-	hypothetical protein
435	 70.05	+1	473370..474404	-	344	94312982	-	Rmet_4054	-	cytochrome C biogenesis protein
436	 66.12	0	474397..474948	-	183	94312983	-	Rmet_4055	-	periplasmic protein thiol
437	 68.58	+1	474945..476987	-	680	94312984	-	Rmet_4056	-	cytochrome c-type biogenesis protein CcmF
438	 65.11	0	476984..477433	-	149	94312985	-	Rmet_4057	-	cytochrome c-type biogenesis protein CcmE
439	 68.33	+1	477573..478352	-	259	94312986	-	Rmet_4058	-	heme exporter protein CcmC
440	 68.16	+1	478357..479025	-	222	94312987	-	Rmet_4059	-	heme exporter protein CcmB
441	 69.18	+1	479022..479657	-	211	94312988	-	Rmet_4060	-	cytochrome c biogenesis protein CcmA
442	 61.90	0	479661..480248	-	195	94312989	-	Rmet_4061	-	periplasmic nitrate reductase subunit NapC
443	 63.41	0	480269..480760	-	163	94312990	-	Rmet_4062	-	periplasmic nitrate reductase subunit NapB
444	 63.26	0	480778..483273	-	831	94312991	-	Rmet_4063	-	nitrate reductase
445	 62.42	0	483254..483583	-	109	94312992	-	Rmet_4064	-	periplasmic nitrate reductase chaperone NapD
446	 58.79	-1	483679..483843	-	54	94312993	-	Rmet_4065	-	periplasmic nitrate reductase NapE
447	 63.50	0	483858..484742	+	294	94312994	-	Rmet_4066	-	methyltransferase type 11
448	 66.36	0	484715..485692	-	325	94312995	-	Rmet_4067	-	twin-arginine translocation pathway signal
449	 64.94	0	485742..487481	-	579	94312996	-	Rmet_4068	-	acyl-CoA synthetase
450	 68.20	+1	487560..490940	-	1126	94312997	-	Rmet_4069	-	carbamoyl-phosphate synthase L chain, ATP-binding
451	 67.34	+1	491048..491941	-	297	94312998	-	Rmet_4070	-	LysR family transcriptional regulator
452	 66.16	0	492054..493229	+	391	94312999	-	Rmet_4071	-	L-carnitine dehydratase/bile acid-inducible protein F
453	 62.55	0	493265..493726	+	153	94313000	-	Rmet_4072	-	hypothetical protein
454	 65.47	0	493785..494783	+	332	94313001	-	Rmet_4073	-	hypothetical protein
455	 67.27	0	494826..495986	+	386	94313002	-	Rmet_4074	-	acyl-CoA dehydrogenase-like protein
456	 66.47	0	496166..497161	+	331	94313003	-	Rmet_4075	-	acyl-CoA dehydrogenase-like protein
457	 64.28	0	497224..498018	-	264	94313004	-	Rmet_4076	-	short-chain dehydrogenase/reductase SDR
458	 60.86	0	498208..499551	-	447	94313005	-	Rmet_4077	-	TRAP transporter solute receptor TAXI family protein
459	 63.94	0	499905..501332	-	475	94313006	-	Rmet_4078	-	major facilitator transporter
460	 64.06	0	502667..503050	+	127	94313007	-	Rmet_4080	-	hypothetical protein
461	 60.44	0	503243..503692	-	149	94313008	-	Rmet_4081	-	hypothetical protein
462	 62.24	0	503870..504163	-	97	94313009	-	Rmet_4082	-	hypothetical protein
463	 62.11	0	504259..504543	-	94	94313010	-	Rmet_4083	-	hypothetical protein
464	 64.07	0	504646..506106	+	486	94313011	-	Rmet_4084	-	alkaline phosphatase
465	 64.53	0	506142..507545	+	467	94313012	-	Rmet_4085	-	alkaline phosphatase
466	 64.00	0	507636..508385	+	249	94313013	-	Rmet_4086	-	putative signal peptide protein
467	 64.01	0	508446..509048	-	200	94313014	-	Rmet_4087	-	hypothetical protein
468	 64.67	0	509045..510697	-	550	94313015	-	Rmet_4088	-	hypothetical protein
469	 65.09	0	510675..511946	-	423	94313016	-	Rmet_4089	-	hypothetical protein
470	 64.98	0	512206..512619	-	137	94313017	-	Rmet_4090	-	MerR family transcriptional regulator
471	 65.80	0	512688..513950	+	420	94313018	-	Rmet_4091	-	NADH:flavin oxidoreductase/NADH oxidase
472	 65.36	0	513979..514896	-	305	94313019	-	Rmet_4092	-	LysR family transcriptional regulator
473	 64.95	0	515077..515775	+	232	94313020	-	Rmet_4093	-	Pirin-like protein
474	 61.70	0	515828..516250	+	140	94313021	-	Rmet_4094	-	DoxX
63.77	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.