IslandPathversion 1.0

IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.77 STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
286	 61.71	0	304259..305530	+	423	94312833	-	Rmet_3905	-	hypothetical protein
287	 59.58	-1	305568..307106	+	512	94312834	-	Rmet_3906	-	hypothetical protein
288	 66.16	0	307128..308306	-	392	94312835	-	Rmet_3907	-	LuxR family transcriptional regulator
289	 64.64	0	308681..310996	-	771	94312836	-	Rmet_3908	-	MscS mechanosensitive ion channel
290	 66.98	0	311279..311599	+	106	94312837	-	Rmet_3909	-	hypothetical protein
291	 64.67	0	311806..312156	+	116	94312838	-	Rmet_3910	-	hypothetical protein
292	 64.11	0	312196..312822	+	208	94312839	-	Rmet_3911	-	lysine exporter protein LysE/YggA
293	 65.78	0	312850..313524	-	224	94312840	-	Rmet_3912	-	phosphoglycerate mutase
294	 65.17	0	313711..314709	-	332	94312841	-	Rmet_3913	-	hypothetical protein
295	 64.82	0	314824..315528	-	234	94312842	-	Rmet_3914	-	TetR family transcriptional regulator
296	 64.21	0	315660..316472	+	270	94312843	-	Rmet_3915	-	IclR family transcriptional regulator
297	 68.61	+1	316555..318666	+	703	94312844	-	Rmet_3916	-	CoA-binding
298	 65.86	0	318709..319695	+	328	94312845	-	Rmet_3917	-	hypothetical protein
299	 66.21	0	319723..321036	+	437	94312846	-	Rmet_3918	-	hypothetical protein
300	 65.38	0	321076..322392	+	438	94312847	-	Rmet_3919	-	hypothetical protein
301	 65.54	0	322389..323366	+	325	94312848	-	Rmet_3920	-	hypothetical protein
302	 67.83	+1	323420..323848	-	142	94312849	-	Rmet_3921	-	hypothetical protein
303	 64.85	0	323961..325553	-	530	94312850	-	Rmet_3922	-	DNA polymerase III, epsilon subunit
304	 62.80	0	332091..333254	+	387	94312851	-	Rmet_3923	-	secretion protein HlyD
305	 62.22	0	333281..336427	+	1048	94312852	-	Rmet_3924	-	hydrophobe/amphiphile efflux-1 HAE1
306	 65.60	0	336424..337923	+	499	94312853	-	Rmet_3925	-	RND efflux system, outer membrane lipoprotein, NodT
307	 65.46	0	338017..338925	-	302	94312854	-	Rmet_3926	-	arginase
308	 66.36	0	339023..340012	-	329	94312855	-	Rmet_3927	-	twin-arginine translocation pathway signal
309	 61.60	0	340094..340330	-	78	94312856	-	Rmet_3928	-	hypothetical protein
310	 61.11	0	340370..340585	-	71	94312857	-	Rmet_3929	-	hypothetical protein
311	 65.59	0	340639..341472	-	277	94312858	-	Rmet_3930	-	ATPase
312	 65.56	0	341469..342908	-	479	94312859	-	Rmet_3931	-	integrase catalytic subunit
313	 64.39	0	343020..343589	-	189	94312860	-	Rmet_3932	-	hypothetical protein
314	 66.03	0	343656..344591	-	311	94312861	-	Rmet_3933	-	hypothetical protein
315	 64.43	0	344735..345406	+	223	94312862	-	Rmet_3934	-	two component transcriptional regulator
316	 65.76	0	345399..346826	+	475	94312863	-	Rmet_3935	-	periplasmic sensor signal transduction histidine kinase
317	 61.93	0	346940..348586	+	548	94312864	-	Rmet_3936	-	EmrB/QacA family drug resistance transporter
318	 64.50	0	348634..349095	+	153	94312865	-	Rmet_3937	-	MarR family transcriptional regulator
319	 65.75	0	349121..350542	-	473	94312866	-	Rmet_3938	-	cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
320	 62.35	0	350551..351453	-	300	94312867	-	Rmet_3939	-	two component LuxR family transcriptional regulator
321	 62.05	0	351519..352472	-	317	94312868	-	Rmet_3940	-	LysR family transcriptional regulator
322	 59.26	-1	353158..353454	+	98	94312869	-	Rmet_3941	-	hypothetical protein
323	 61.74	0	353451..354344	-	297	94312870	-	Rmet_3942	-	integrase catalytic subunit
324	 59.93	-1	354341..354637	-	98	94312871	-	Rmet_3943	-	transposase IS3/IS911
325	 59.31	-1	354699..354929	+	76	94312872	-	Rmet_3944	-	transposase IS3/IS911
326	 66.98	0	355052..355369	+	105	94312873	-	Rmet_3945	-	hypothetical protein
327	 65.25	0	355461..356873	+	470	94312874	-	Rmet_3946	-	hypothetical protein
328	 63.48	0	356876..357721	+	281	94312875	-	Rmet_3947	-	hypothetical protein
329	 65.00	0	357752..358411	-	219	94312876	-	Rmet_3948	-	Crp/FNR family transcriptional regulator
330	 66.39	0	358779..359852	+	357	94312877	-	Rmet_3949	-	esterase, PHB depolymerase
331	 65.22	0	359956..361266	-	436	94312878	-	Rmet_3950	-	major facilitator transporter
332	 64.85	0	361548..365561	+	1337	94312879	-	Rmet_3951	-	hypothetical protein
333	 59.14	-1	365672..365857	+	61	94312880	-	Rmet_3952	-	rubredoxin-type Fe(Cys)4 protein
334	 59.26	-1	366120..366308	-	62	94312881	-	Rmet_3953	-	hypothetical protein
335	 61.71	0	366585..367088	+	167	94312882	-	Rmet_3954	-	hypothetical protein
336	 63.35	0	367364..368539	+	391	94312883	-	Rmet_3955	-	cytochrome c oxidase, subunit II
337	 60.98	0	368577..370334	+	585	94312884	-	Rmet_3956	-	cytochrome c oxidase, subunit I
338	 66.67	0	370331..370999	+	222	94312885	-	Rmet_3957	-	cytochrome c oxidase subunit III
339	 61.28	0	371012..371716	+	234	94312886	-	Rmet_3958	-	cytochrome c oxidase, subunit III
340	 59.32	-1	371725..372078	+	117	94312887	-	Rmet_3959	-	hypothetical protein
341	 65.08	0	372138..373337	+	399	94312888	-	Rmet_3960	-	hypothetical protein
342	 64.01	0	373426..374853	-	475	94312889	-	Rmet_3961	-	succinate semialdehyde dehydrogenase
343	 63.15	0	375086..376564	+	492	94312890	-	Rmet_3962	-	MATE efflux family protein
344	 59.60	-1	376945..377439	+	164	94312891	-	Rmet_3963	-	hypothetical protein
345	 62.81	0	377453..378955	+	500	94312892	-	Rmet_3964	-	hypothetical protein
346	 57.89	-1	379085..379426	+	113	94312893	-	Rmet_3965	-	PadR family transcriptional regulator
347	 58.56	-1	379649..382114	-	821	94312894	-	Rmet_3966	-	hypothetical protein
348	 63.10	0	382593..383600	-	335	94312895	-	Rmet_3967	-	response regulator receiver modulated diguanylate cyclase
349	 67.35	+1	383624..384640	-	338	94312896	-	Rmet_3968	-	chemotaxis-specific methylesterase
350	 66.93	0	384637..386943	-	768	94312897	-	Rmet_3969	-	CheA signal transduction histidine kinases
351	 66.93	0	386940..387692	-	250	94312898	-	Rmet_3970	-	CheW protein
352	 68.37	+1	387685..388974	-	429	94312899	-	Rmet_3971	-	MCP methyltransferase, CheR-type
353	 69.41	+1	388971..389444	-	157	94312900	-	Rmet_3972	-	CheW protein
354	 65.73	0	389472..391292	-	606	94312901	-	Rmet_3973	-	methyl-accepting chemotaxis sensory transducer
355	 66.89	0	391366..392691	+	441	94312902	-	Rmet_3974	-	diguanylate cyclase/phosphodiesterase
356	 68.18	+1	392880..395387	+	835	94312903	-	Rmet_3975	-	putative chromosome segregation ATPases
357	 63.34	0	395581..396753	-	390	94312904	-	Rmet_3976	-	extracellular ligand-binding receptor
358	 63.84	0	396856..397563	-	235	94312905	-	Rmet_3977	-	ABC transporter related
359	 62.48	0	397550..398314	-	254	94312906	-	Rmet_3978	-	ABC transporter related
360	 63.27	0	398307..399335	-	342	94312907	-	Rmet_3979	-	inner-membrane translocator
361	 62.73	0	399355..400218	-	287	94312908	-	Rmet_3980	-	inner-membrane translocator
362	 67.02	0	400527..401369	+	280	94312909	-	Rmet_3981	-	IclR family transcriptional regulator
363	 64.21	0	401407..402219	+	270	94312910	-	Rmet_3982	-	short-chain dehydrogenase/reductase SDR
364	 63.63	0	402289..403275	+	328	94312911	-	Rmet_3983	-	hypothetical protein
365	 65.75	0	403331..404752	-	473	94312912	-	Rmet_3984	-	major facilitator transporter
366	 61.25	0	404910..408380	-	1156	94312913	-	Rmet_3985	-	Hpt sensor hybrid histidine kinase
367	 59.94	-1	408389..409042	-	217	94312914	-	Rmet_3986	-	two component LuxR family transcriptional regulator
368	 62.29	0	409421..410356	-	311	94312915	-	Rmet_3987	-	hypothetical protein
369	 58.62	-1	410435..410869	+	144	94312916	-	Rmet_3988	-	hypothetical protein
370	 65.32	0	410927..411370	-	147	94312917	-	Rmet_3989	-	hypothetical protein
371	 61.43	0	411394..412119	-	241	94312918	-	Rmet_3990	-	GTP cyclohydrolase
372	 66.90	0	412227..413486	-	419	94312919	-	Rmet_3991	-	arsenical pump membrane protein
373	 66.28	0	413498..415561	-	687	94312920	-	Rmet_3992	-	penicillin-binding protein 1A
374	 63.97	0	415563..416453	-	296	94312921	-	Rmet_3993	-	hypothetical protein
375	 64.10	0	416598..416831	+	77	94312922	-	Rmet_3994	-	hypothetical protein
376	 64.99	0	416838..419162	-	774	94312923	-	Rmet_3995	-	glycoside hydrolase family protein
377	 62.51	0	419370..420980	+	536	94312924	mdoG	Rmet_3996	-	glucan biosynthesis protein G
378	 62.34	0	420993..421223	-	76	94312925	-	Rmet_3997	-	hypothetical protein
379	 63.85	0	421297..422007	-	236	94312926	-	Rmet_3998	-	hypothetical protein
380	 62.73	0	422017..424482	-	821	94312927	-	Rmet_3999	-	TonB-dependent siderophore receptor
381	 69.31	+1	424579..425523	-	314	94312928	-	Rmet_4000	-	FecR family protein
382	 64.31	0	425553..426062	-	169	94312929	-	Rmet_4001	-	sigma-24 (FecI-like)
383	 63.54	0	426300..427514	-	404	94312930	-	Rmet_4002	-	response regulator receiver/diguanylate phosphodiesterase
384	 60.63	0	427710..428438	+	242	94312931	-	Rmet_4003	-	aspartate racemase
385	 64.51	0	429029..430048	+	339	94312932	-	Rmet_4004	-	integrase catalytic subunit
63.77	MEAN

3.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.