IslandPathversion 1.0

IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.77 STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
192	 65.32	0	202832..204022	-	396	94312739	-	Rmet_3809	-	L-carnitine dehydratase/bile acid-inducible protein F
193	 63.36	0	204129..205247	-	372	94312740	-	Rmet_3810	-	LysR family transcriptional regulator
194	 67.58	+1	205246..206229	+	327	94312741	-	Rmet_3811	-	hypothetical protein
195	 61.36	0	206261..206731	+	156	94312742	-	Rmet_3812	-	MaoC-like dehydratase
196	 65.24	0	206721..207698	+	325	94312743	-	Rmet_3813	-	hypothetical protein
197	 64.38	0	208109..208720	-	203	94312744	-	Rmet_3814	-	hypothetical protein
198	 65.19	0	208717..210339	-	540	94312745	-	Rmet_3815	-	peptidoglycan binding domain-containing protein
199	 67.10	0	210454..211149	-	231	94312746	-	Rmet_3816	-	TetR family transcriptional regulator
200	 65.45	0	211247..212893	+	548	94312747	-	Rmet_3817	-	acyl-CoA dehydrogenase-like protein
201	 65.87	0	213032..214537	+	501	94312748	-	Rmet_3818	-	AMP-dependent synthetase and ligase
202	 64.51	0	214661..215635	+	324	94312749	-	Rmet_3819	-	cysteine synthase A
203	 67.45	+1	215755..216906	+	383	94312750	-	Rmet_3820	-	putative cytochrome p450 oxidoreductase
204	 65.83	0	216922..217278	+	118	94312751	-	Rmet_3821	-	antibiotic biosynthesis monooxygenase
205	 67.20	0	217297..218052	+	251	94312752	-	Rmet_3822	-	hypothetical protein
206	 71.02	+2	218156..219280	+	374	94312753	-	Rmet_3823	-	esterase, PHB depolymerase
207	 64.40	0	219350..219658	-	102	94312754	-	Rmet_3824	-	ferredoxin
208	 66.67	0	219655..220392	-	245	94312755	-	Rmet_3825	-	hypothetical protein
209	 65.51	0	220465..222453	+	662	94312756	-	Rmet_3826	-	hypothetical protein
210	 67.80	+1	222534..223148	+	204	94312757	-	Rmet_3827	-	hypothetical protein
211	 63.41	0	223145..223819	+	224	94312758	-	Rmet_3828	-	HD superfamily hydrolase
212	 62.72	0	223991..224548	+	185	94312759	-	Rmet_3829	-	hypothetical protein
213	 59.07	-1	224545..225255	+	236	94312760	-	Rmet_3830	-	hypothetical protein
214	 66.07	0	225379..226212	-	277	94312761	-	Rmet_3831	-	hypothetical protein
215	 66.05	0	226293..227261	-	322	94312762	-	Rmet_3832	-	hypothetical protein
216	 67.84	+1	227446..228384	-	312	94312763	-	Rmet_3833	-	LysR family transcriptional regulator
217	 66.92	0	228527..229699	+	390	94312764	-	Rmet_3834	-	L-carnitine dehydratase/bile acid-inducible protein F
218	 68.59	+1	229712..230542	+	276	94312765	-	Rmet_3835	-	HpcH/HpaI aldolase
219	 69.28	+1	230873..232210	+	445	94312766	-	Rmet_3836	-	outer membrane efflux protein
220	 67.32	+1	232194..233411	+	405	94312767	-	Rmet_3837	-	secretion protein HlyD
221	 62.14	0	236768..237784	+	338	94312768	-	Rmet_3840	-	diguanylate cyclase
222	 62.87	0	238081..239895	+	604	94312769	-	Rmet_3841	-	tannase and feruloyl esterase
223	 64.97	0	239916..240446	-	176	94312770	-	Rmet_3842	-	hypothetical protein
224	 62.90	0	240562..241065	+	167	94312771	-	Rmet_3843	-	alkylhydroperoxidase AhpD core
225	 65.62	0	241065..241925	+	286	94312772	-	Rmet_3844	-	RNA polymerase sigma factor SigJ
226	 66.08	0	242012..242350	+	112	94312773	-	Rmet_3845	-	hypothetical protein
227	 65.32	0	242320..243138	-	272	94312774	-	Rmet_3846	-	methyltransferase type 11
228	 62.92	0	243208..243447	-	79	94312775	-	Rmet_3847	-	hypothetical protein
229	 63.99	0	243653..244138	+	161	94312776	-	Rmet_3848	-	3-demethylubiquinone-9 3-methyltransferase
230	 65.17	0	244147..245616	-	489	94312777	-	Rmet_3849	-	hypothetical protein
231	 63.38	0	245613..246494	-	293	94312778	-	Rmet_3850	-	putative thiol-disulphide oxidoreductase DCC
232	 64.86	0	246543..246986	-	147	94312779	-	Rmet_3851	-	integral membrane protein-like protein
233	 64.35	0	246983..248275	-	430	94312780	-	Rmet_3852	-	NAD-dependent epimerase/dehydratase
234	 60.07	-1	248379..248924	-	181	94312781	-	Rmet_3853	-	transcriptional regulators-like protein
235	 66.33	0	248982..250460	+	492	94312782	-	Rmet_3854	-	putative nitrilotriacetate monooxygenase component A
236	 63.02	0	250580..251401	+	273	94312783	-	Rmet_3855	-	NLPA lipoprotein
237	 63.39	0	251417..252241	+	274	94312784	-	Rmet_3856	-	ABC transporter related
238	 64.98	0	252225..252878	+	217	94312785	-	Rmet_3857	-	binding-protein-dependent transport systems inner membrane component
239	 65.63	0	252938..254293	-	451	94312786	-	Rmet_3858	-	Acyl-CoA dehydrogenase
240	 65.54	0	254335..255396	-	353	94312787	-	Rmet_3859	-	tRNA 2-selenouridine synthase
241	 64.90	0	255393..256466	-	357	94312788	-	Rmet_3860	-	selenophosphate synthase
242	 66.01	0	256575..258239	-	554	94312789	-	Rmet_3861	-	rhomboid-like protein
243	 67.13	0	258423..259073	-	216	94312790	-	Rmet_3862	-	lysine exporter protein LysE/YggA
244	 69.45	+1	259148..260044	+	298	94312791	-	Rmet_3863	-	chromosome replication initiation inhibitor protein
245	 62.09	0	260198..260656	-	152	94312792	-	Rmet_3864	-	hypothetical protein
246	 65.81	0	260670..261842	-	390	94312793	-	Rmet_3865	-	chromate transporter
247	 66.27	0	261862..262869	-	335	94312794	-	Rmet_3866	-	putative chromate resistance signal peptide protein
248	 66.67	0	262969..263907	-	312	94312795	-	Rmet_3867	-	AraC family transcriptional regulator
249	 67.51	+1	263994..265415	+	473	94312796	-	Rmet_3868	-	cytochrome P450
250	 66.02	0	265493..266572	-	359	94312797	-	Rmet_3869	-	NADH:flavin oxidoreductase/NADH oxidase
251	 63.10	0	266746..267615	+	289	94312798	-	Rmet_3870	-	LysR family transcriptional regulator
252	 67.82	+1	267767..268198	-	143	94312799	-	Rmet_3871	-	putative signal peptide protein
253	 64.54	0	268338..269324	-	328	94312800	-	Rmet_3872	-	hypothetical protein
254	 65.90	0	269603..270121	-	172	94312801	-	Rmet_3873	-	MarR family transcriptional regulator
255	 67.19	0	270355..271125	-	256	94312802	-	Rmet_3874	-	short chain dehydrogenase
256	 66.02	0	271238..272161	+	307	94312803	-	Rmet_3875	-	LysR family transcriptional regulator
257	 64.54	0	272200..275121	+	973	94312804	-	Rmet_3876	-	metal dependent phosphohydrolase
258	 66.42	0	275146..275952	-	268	94312805	-	Rmet_3877	-	hypothetical protein
259	 64.83	0	276058..276981	-	307	94312806	-	Rmet_3878	-	hypothetical protein
260	 72.45	+2	277233..278096	+	287	94312807	-	Rmet_3879	-	hypothetical protein
261	 63.64	0	278177..278506	+	109	94312808	-	Rmet_3880	-	hypothetical protein
262	 65.55	0	278525..279238	+	237	94312809	-	Rmet_3881	-	two component transcriptional regulator
263	 67.05	0	279238..280551	+	437	94312810	-	Rmet_3882	-	periplasmic sensor signal transduction histidine kinase
264	 65.87	0	280675..281430	+	251	94312811	-	Rmet_3883	-	hypothetical protein
265	 60.30	0	281562..282095	+	177	94312812	-	Rmet_3884	-	MarR family transcriptional regulator
266	 67.07	0	282160..282897	-	245	94312813	-	Rmet_3885	-	Asp/Glu racemase
267	 66.88	0	282904..284322	-	472	94312814	-	Rmet_3886	-	dihydropyrimidinase
268	 64.88	0	284348..285076	-	242	94312815	-	Rmet_3887	-	Asp/Glu racemase
269	 64.36	0	285172..286473	-	433	94312816	-	Rmet_3888	-	major facilitator transporter
270	 67.77	+1	286661..287383	+	240	94312817	-	Rmet_3889	-	GntR family transcriptional regulator
271	 64.20	0	287564..288334	+	256	94312818	-	Rmet_3890	-	extracellular solute-binding protein
272	 67.97	+1	288387..288845	-	152	94312819	-	Rmet_3891	-	endoribonuclease L-PSP
273	 66.94	0	288969..289703	-	244	94312820	-	Rmet_3892	-	short-chain dehydrogenase/reductase SDR
274	 66.35	0	289841..290794	+	317	94312821	-	Rmet_3893	-	LysR family transcriptional regulator
275	 65.30	0	291095..292120	+	341	94312822	-	Rmet_3894	-	hypothetical protein
276	 65.73	0	292231..292980	+	249	94312823	-	Rmet_3895	-	GntR family transcriptional regulator
277	 67.64	+1	293026..294567	+	513	94312824	-	Rmet_3896	-	hypothetical protein
278	 66.90	0	294634..295494	-	286	94312825	-	Rmet_3897	-	hypothetical protein
279	 68.33	+1	295521..296900	-	459	94312826	-	Rmet_3898	-	MmgE/PrpD
280	 62.22	0	296909..298078	-	389	94312827	-	Rmet_3899	-	acyl-CoA dehydrogenase-like protein
281	 66.08	0	298190..299386	+	398	94312828	-	Rmet_3900	-	hypothetical protein
282	 65.67	0	299409..300311	-	300	94312829	-	Rmet_3901	-	LysR family transcriptional regulator
283	 63.25	0	300310..301362	+	350	94312830	-	Rmet_3902	-	short-chain dehydrogenase/reductase SDR
284	 56.38	-2	301643..302089	-	148	94312831	-	Rmet_3903	-	hypothetical protein
285	 57.25	-1	302240..304162	+	640	94312832	-	Rmet_3904	-	putative serine protein kinase, PrkA
286	 61.71	0	304259..305530	+	423	94312833	-	Rmet_3905	-	hypothetical protein
287	 59.58	-1	305568..307106	+	512	94312834	-	Rmet_3906	-	hypothetical protein
288	 66.16	0	307128..308306	-	392	94312835	-	Rmet_3907	-	LuxR family transcriptional regulator
289	 64.64	0	308681..310996	-	771	94312836	-	Rmet_3908	-	MscS mechanosensitive ion channel
290	 66.98	0	311279..311599	+	106	94312837	-	Rmet_3909	-	hypothetical protein
291	 64.67	0	311806..312156	+	116	94312838	-	Rmet_3910	-	hypothetical protein
63.77	MEAN

3.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.