IslandPathversion 1.0

IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.77 STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2214	 67.24	0	2464445..2465497	-	350	94314761	-	Rmet_5842	-	hypothetical protein
2215	 65.80	0	2465872..2467368	+	498	94314762	-	Rmet_5843	-	mannose-1-phosphate guanylyltransferase (GDP)
2216	 67.73	+1	2467430..2469772	+	780	94314763	-	Rmet_5844	-	lipopolysaccharide biosynthesis
2217	 67.75	+1	2469880..2471727	+	615	94314764	-	Rmet_5845	-	hypothetical protein
2218	 64.31	0	2471779..2473389	+	536	94314765	-	Rmet_5846	-	hypothetical protein
2219	 65.96	0	2473410..2474255	-	281	94314766	-	Rmet_5847	-	short-chain dehydrogenase/reductase SDR
2220	 64.07	0	2474436..2475629	+	397	94314767	-	Rmet_5848	-	hypothetical protein
2221	 64.84	0	2475711..2477957	-	748	94314768	-	Rmet_5849	-	exopolysaccharide transporter
2222	 67.47	+1	2477957..2478451	-	164	94314769	-	Rmet_5850	-	protein tyrosine phosphatase
2223	 65.56	0	2478455..2479543	-	362	94314770	-	Rmet_5851	-	polysaccharide export protein
2224	 66.67	0	2479881..2480642	+	253	94314771	-	Rmet_5852	-	hypothetical protein
2225	 66.18	0	2480677..2481909	-	410	94314772	-	Rmet_5853	-	glycosyl transferase, group 1
2226	 62.30	0	2481906..2483051	-	381	94314773	-	Rmet_5854	-	glycosyl transferase, group 1
2227	 65.06	0	2483095..2483715	-	206	94314774	-	Rmet_5855	-	putative colanic acid biosynthesis acetyltransferase WcaF
2228	 67.14	0	2483858..2485120	-	420	94314775	-	Rmet_5856	-	glycosyl transferase
2229	 63.82	0	2485443..2486846	+	467	94314776	-	Rmet_5857	-	hypothetical protein
2230	 62.36	0	2486979..2488418	-	479	94314777	-	Rmet_5858	-	hypothetical protein
2231	 65.77	0	2488457..2489458	-	333	94314778	-	Rmet_5859	-	NAD-dependent epimerase/dehydratase
2232	 63.27	0	2489442..2490647	-	401	94314779	-	Rmet_5860	-	GDP-mannose 4,6-dehydratase
2233	 65.27	0	2490827..2491756	-	309	94314780	-	Rmet_5861	-	LuxR family transcriptional regulator
2234	 69.90	+1	2492565..2492873	-	102	94314781	-	Rmet_5862	-	putative signal peptide protein
2235	 63.30	0	2493292..2493825	-	177	94314782	-	Rmet_5863	-	hypothetical protein
2236	 61.04	0	2493824..2494267	+	147	161621307	-	Rmet_5864	-	cyanate hydratase
2237	 65.45	0	2494346..2494510	-	54	94314784	-	Rmet_5865	-	hypothetical protein
2238	 68.07	+1	2494850..2495632	+	260	94314785	-	Rmet_5866	-	phosphoribosyltransferase
2239	 66.28	0	2495643..2496155	-	170	94314786	-	Rmet_5867	-	3-isopropylmalate dehydratase, small subunit
2240	 68.78	+1	2496152..2497474	-	440	94314787	-	Rmet_5868	-	3-isopropylmalate dehydratase large subunit
2241	 66.28	0	2497471..2498511	-	346	94314788	-	Rmet_5869	-	hypothetical protein
2242	 66.79	0	2498612..2499394	-	260	94314789	-	Rmet_5870	-	GntR family transcriptional regulator
2243	 66.19	0	2500094..2501575	+	493	94314790	-	Rmet_5871	-	putative glycin-rich signal peptide protein
2244	 63.20	0	2501768..2502229	+	153	94314791	-	Rmet_5872	-	putative signal peptide protein
2245	 62.09	0	2502226..2502924	+	232	94314792	-	Rmet_5873	-	peptidase C39, bacteriocin processing
2246	 66.84	0	2502938..2504077	+	379	94314793	-	Rmet_5874	-	hypothetical protein
2247	 64.36	0	2504186..2505658	+	490	94314794	-	Rmet_5875	-	hypothetical protein
2248	 64.13	0	2505827..2506339	+	170	94314795	-	Rmet_5876	-	putative transmembrane protein
2249	 63.68	0	2506623..2507762	+	379	94314796	-	Rmet_5877	-	extracellular ligand-binding receptor
2250	 67.69	+1	2507793..2508572	+	259	94314797	-	Rmet_5878	-	gluconate 5-dehydrogenase
2251	 67.33	+1	2508595..2509494	-	299	94314798	-	Rmet_5879	-	LysR family transcriptional regulator
2252	 67.95	+1	2509579..2510979	+	466	94314799	-	Rmet_5880	-	hypothetical protein
2253	 62.32	0	2510992..2511336	+	114	94314800	-	Rmet_5881	-	hypothetical protein
2254	 65.86	0	2511379..2512365	+	328	94314801	-	Rmet_5882	-	hypothetical protein
2255	 66.00	0	2512485..2513234	+	249	94314802	-	Rmet_5883	-	twin-arginine translocation pathway signal
2256	 65.64	0	2513295..2513684	-	129	94314803	-	Rmet_5884	-	GCN5-related N-acetyltransferase
2257	 63.58	0	2513911..2515401	+	496	94314804	-	Rmet_5885	-	AMP nucleosidase
2258	 59.89	-1	2515528..2516265	-	245	94314805	-	Rmet_5886	-	OmpW
2259	 63.79	0	2516541..2518244	-	567	94314806	-	Rmet_5887	-	2-isopropylmalate synthase
2260	 66.38	0	2518769..2520154	+	461	94314807	-	Rmet_5888	-	hypothetical protein
2261	 67.29	0	2520447..2520767	-	106	94314808	-	Rmet_5889	-	putative transmembrane protein
2262	 65.97	0	2520783..2522645	-	620	94314809	-	Rmet_5890	-	ferrous iron transport protein B
2263	 66.01	0	2522669..2522971	-	100	94314810	-	Rmet_5891	-	hypothetical protein
2264	 64.77	0	2523310..2524203	-	297	94314811	-	Rmet_5892	-	LysR family transcriptional regulator
2265	 68.89	+1	2524347..2526143	+	598	94314812	-	Rmet_5893	-	acyl-CoA dehydrogenase-like protein
2266	 64.53	0	2526175..2527251	+	358	94314813	-	Rmet_5894	-	hypothetical protein
2267	 65.88	0	2527275..2528414	+	379	94314814	-	Rmet_5895	-	L-carnitine dehydratase/bile acid-inducible protein F
2268	 66.31	0	2528489..2530189	-	566	94314815	-	Rmet_5896	-	L-lactate transport
2269	 66.87	0	2530248..2531693	-	481	94314816	-	Rmet_5897	-	Iron-sulfur cluster binding protein
2270	 68.92	+1	2531690..2532400	-	236	94314817	-	Rmet_5898	-	hypothetical protein
2271	 67.94	+1	2532397..2533182	-	261	94314818	-	Rmet_5899	-	protein of unknown function DUF224, cysteine-rich region
2272	 67.38	+1	2533320..2534018	+	232	94314819	-	Rmet_5900	-	GntR family transcriptional regulator
2273	 64.11	0	2534090..2535184	-	364	94314820	-	Rmet_5901	-	hypothetical protein
2274	 67.25	0	2535387..2536769	+	460	94314821	-	Rmet_5902	-	ethanolamine ammonia-lyase heavy chain
2275	 69.39	+1	2536787..2537557	+	256	94314822	-	Rmet_5903	-	ethanolamine ammonia-lyase small subunit
2276	 58.86	-1	2537576..2538049	-	157	94314823	-	Rmet_5904	-	YbaK/prolyl-tRNA synthetase associated region
2277	 63.94	0	2538084..2539037	-	317	94314824	-	Rmet_5905	-	LysR family transcriptional regulator
2278	 63.77	0	2539122..2540435	-	437	94314825	-	Rmet_5906	-	metabolite
2279	 58.33	-1	2540833..2541156	+	107	94314826	-	Rmet_5907	-	hypothetical protein
2280	 63.21	0	2541283..2542440	+	385	94314827	-	Rmet_5908	-	acyl-CoA dehydrogenase-like protein
2281	 66.49	0	2542501..2543076	+	191	94314828	-	Rmet_5909	-	hypothetical protein
2282	 62.63	0	2543235..2543606	-	123	94314829	-	Rmet_5910	-	hypothetical protein
2283	 66.56	0	2543712..2546585	-	957	94314830	-	Rmet_5911	-	peptidase M16-like protein
2284	 68.46	+1	2546774..2548276	+	500	94314831	-	Rmet_5912	-	transcriptional regulator Ada / DNA-3-methyladenine glycosylase II / DNA-O6-methylguanine--protein-cysteine S-methyltransferase
2285	 67.40	+1	2548273..2548821	+	182	94314832	-	Rmet_5913	-	methylated-DNA--protein-cysteine methyltransferase
2286	 69.49	+1	2548839..2549405	+	188	94314833	-	Rmet_5914	-	2',5' RNA ligase
2287	 62.93	0	2549538..2550152	-	204	94314834	-	Rmet_5915	-	lysine exporter protein LysE/YggA
2288	 65.27	0	2550300..2551160	+	286	94314835	-	Rmet_5916	-	LysR family transcriptional regulator
2289	 62.77	0	2551407..2552201	+	264	94314836	-	Rmet_5917	-	YcgR
2290	 65.66	0	2552260..2553156	-	298	94314837	-	Rmet_5918	-	IclR family transcriptional regulator
2291	 65.34	0	2553410..2555662	-	750	94314838	-	Rmet_5919	-	patatin
2292	 62.27	0	2555737..2556123	+	128	94314839	-	Rmet_5920	-	hypothetical protein
2293	 67.51	+1	2556120..2556953	+	277	94314840	-	Rmet_5921	-	NAD-dependent deacetylase
2294	 65.55	0	2557197..2558093	+	298	94314841	-	Rmet_5922	-	hypothetical protein
2295	 67.35	+1	2558090..2558671	-	193	94314842	-	Rmet_5923	-	putative transmembrane protein
2296	 61.76	0	2558763..2558966	-	67	94314843	-	Rmet_5924	-	hypothetical protein
2297	 61.07	0	2559058..2559486	-	142	94314844	-	Rmet_5925	-	3-demethylubiquinone-9 3-methyltransferase
2298	 64.03	0	2559776..2561101	+	441	94314845	-	Rmet_5926	-	argininosuccinate synthase
2299	 65.79	0	2561254..2562279	+	341	94314846	-	Rmet_5927	-	aldo/keto reductase
2300	 63.99	0	2562506..2565574	+	1022	94314847	-	Rmet_5928	-	putative transmembrane protein
2301	 60.32	0	2565628..2565879	-	83	94314848	-	Rmet_5929	-	transglycosylase-associated protein
2302	 63.82	0	2565981..2568089	-	702	94314849	-	Rmet_5930	-	elongation factor G
2303	 70.11	+1	2568193..2569092	-	299	94314850	-	Rmet_5931	-	polysaccharide deacetylase
2304	 60.06	-1	2569295..2569612	-	105	94314851	-	Rmet_5932	-	hypothetical protein
2305	 64.11	0	2569637..2570380	+	247	94314852	-	Rmet_5933	-	hypothetical protein
2306	 67.07	0	2570387..2571127	-	246	94314853	-	Rmet_5934	-	hypothetical protein
2307	 66.35	0	2571284..2572846	+	520	94314854	-	Rmet_5935	-	methyl-accepting chemotaxis sensory transducer
2308	 67.54	+1	2572884..2573915	-	343	94314855	-	Rmet_5936	-	luciferase-like protein
2309	 68.16	+1	2574045..2576852	-	935	94314856	-	Rmet_5937	-	hypothetical protein
2310	 65.03	0	2576940..2577914	-	324	94314857	-	Rmet_5938	-	rhodanese-like protein
2311	 66.19	0	2578042..2578458	-	138	94314858	-	Rmet_5939	-	Hpt domain-containing protein
2312	 61.84	0	2578455..2579117	-	220	94314859	-	Rmet_5940	-	two component LuxR family transcriptional regulator
2313	 64.90	0	2579403..2580080	-	225	94314860	-	Rmet_5941	-	hypothetical protein
63.77	MEAN

3.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.