IslandPathversion 1.0

IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.77 STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2143	 64.61	0	2384724..2385500	+	258	94314690	-	Rmet_5771	-	enoyl-CoA hydratase
2144	 67.37	+1	2385558..2385986	-	142	94314691	-	Rmet_5772	-	MarR family transcriptional regulator
2145	 63.33	0	2386144..2386473	-	109	94314692	-	Rmet_5773	-	calcium-binding EF-hand
2146	 64.83	0	2387014..2387883	+	289	94314693	-	Rmet_5774	-	hypothetical protein
2147	 66.24	0	2387977..2388684	+	235	94314694	-	Rmet_5775	-	haloacid dehalogenase-like hydrolase
2148	 65.59	0	2388724..2389749	-	341	94314695	-	Rmet_5776	-	hypothetical protein
2149	 65.77	0	2389773..2390108	-	111	94314696	-	Rmet_5777	-	cupin 2, barrel
2150	 66.11	0	2390618..2391694	+	358	94314697	-	Rmet_5778	-	porin
2151	 62.94	0	2391740..2392195	+	151	94314698	-	Rmet_5779	-	hypothetical protein
2152	 64.69	0	2392271..2392978	+	235	94314699	-	Rmet_5780	-	hypothetical protein
2153	 62.81	0	2392980..2393627	+	215	94314700	-	Rmet_5781	-	hypothetical protein
2154	 57.19	-1	2393856..2394161	+	101	94314701	-	Rmet_5782	-	hypothetical protein
2155	 63.54	0	2394158..2395819	+	553	94314702	actP	Rmet_5783	-	acetate permease
2156	 70.25	+1	2395848..2396126	-	92	94314703	-	Rmet_5784	-	hypothetical protein
2157	 62.78	0	2396296..2396475	+	59	94314704	-	Rmet_5785	-	hypothetical protein
2158	 64.45	0	2396558..2397820	+	420	94314705	-	Rmet_5786	-	beta-lactamase
2159	 61.85	0	2397883..2398131	+	82	94314706	-	Rmet_5787	-	hypothetical protein
2160	 62.35	0	2398214..2398861	-	215	94314707	-	Rmet_5788	-	DSBA oxidoreductase
2161	 60.00	-1	2399100..2399294	+	64	94314708	-	Rmet_5789	-	hypothetical protein
2162	 63.66	0	2399376..2399741	-	121	94314709	-	Rmet_5790	-	cytochrome C oxidase subunit IV
2163	 64.32	0	2399738..2400418	-	226	94314710	-	Rmet_5791	-	cytochrome c oxidase, subunit III
2164	 61.96	0	2400421..2402397	-	658	94314711	-	Rmet_5792	-	cytochrome c oxidase, subunit I
2165	 64.06	0	2402401..2403360	-	319	94314712	-	Rmet_5793	-	ubiquinol oxidase, subunit II
2166	 68.53	+1	2403472..2404869	+	465	94314713	-	Rmet_5794	-	GntR family transcriptional regulator
2167	 66.93	0	2404879..2406783	-	634	94314714	-	Rmet_5795	-	OPT superfamily oligopeptide transporter
2168	 66.57	0	2406794..2407801	+	335	94314715	-	Rmet_5796	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
2169	 68.09	+1	2407814..2409145	-	443	94314716	-	Rmet_5797	-	periplasmic sensor signal transduction histidine kinase
2170	 67.63	+1	2409145..2409873	-	242	94314717	-	Rmet_5798	-	two component transcriptional regulator
2171	 69.34	+1	2409880..2410890	-	336	94314718	-	Rmet_5799	-	glucokinase
2172	 66.81	0	2410895..2411575	-	226	94314719	-	Rmet_5800	-	6-phosphogluconolactonase
2173	 65.53	0	2411657..2413147	-	496	94314720	-	Rmet_5801	-	glucose-6-phosphate 1-dehydrogenase
2174	 66.90	0	2413151..2415253	+	700	94314721	-	Rmet_5802	-	phosphogluconate dehydratase
2175	 66.08	0	2415367..2416221	-	284	94314722	-	Rmet_5803	-	MscS mechanosensitive ion channel
2176	 67.54	+1	2416352..2417269	-	305	94314723	-	Rmet_5804	-	AraC family transcriptional regulator
2177	 65.79	0	2417341..2418600	-	419	94314724	-	Rmet_5805	-	major facilitator transporter
2178	 62.52	0	2418875..2421070	+	731	94314725	-	Rmet_5806	-	TonB-dependent siderophore receptor
2179	 63.14	0	2421332..2423485	+	717	94314726	-	Rmet_5807	-	TonB-dependent siderophore receptor
2180	 64.09	0	2423560..2425152	-	530	94314727	prfC	Rmet_5808	-	peptide chain release factor 3
2181	 64.70	0	2425249..2426214	-	321	94314728	-	Rmet_5809	-	ribonuclease BN, putative
2182	 66.67	0	2426337..2426630	+	97	94314729	-	Rmet_5810	-	hypothetical protein
2183	 62.69	0	2426717..2427169	-	150	94314730	-	Rmet_5811	-	hypothetical protein
2184	 65.11	0	2427496..2427816	+	106	94314731	-	Rmet_5812	-	hypothetical protein
2185	 65.00	0	2427981..2429483	-	500	94314732	-	Rmet_5813	-	sigma-54 dependent trancsriptional regulator
2186	 62.55	0	2429480..2429965	-	161	94314733	-	Rmet_5814	-	hypothetical protein
2187	 62.63	0	2430556..2431917	-	453	94314734	-	Rmet_5815	-	xanthine/uracil/vitamin C permease
2188	 56.86	-1	2432243..2432446	+	67	94314735	-	Rmet_5816	-	cold-shock DNA-binding protein family protein
2189	 59.00	-1	2433946..2435040	+	364	94314736	-	Rmet_5817	-	plasmid encoded RepA protein
2190	 55.39	-2	2435143..2435346	-	67	94314737	-	Rmet_5818	-	cold-shock DNA-binding protein family protein
2191	 59.97	-1	2435768..2436424	+	218	94314738	-	Rmet_5819	-	cobyrinic acid a,c-diamide synthase
2192	 61.65	0	2436430..2437446	+	338	94314739	-	Rmet_5820	-	ParB family protein
2193	 63.31	0	2437514..2439094	-	526	94314740	-	Rmet_5821	-	putative integrase/recombinase protein
2194	 65.54	0	2440265..2443009	+	914	94314741	-	Rmet_5822	-	ATP-dependent transcription regulator LuxR
2195	 63.85	0	2443072..2443959	-	295	94314742	-	Rmet_5823	-	taurine catabolism dioxygenase TauD/TfdA
2196	 67.47	+1	2444005..2444997	-	330	94314743	-	Rmet_5824	-	hypothetical protein
2197	 62.76	0	2445014..2445910	-	298	94314744	-	Rmet_5825	-	short-chain dehydrogenase/reductase SDR
2198	 67.68	+1	2445907..2447091	-	394	94314745	-	Rmet_5826	-	lipid-transfer protein
2199	 65.51	0	2447159..2448715	-	518	94314746	-	Rmet_5827	-	AMP-dependent synthetase and ligase
2200	 63.86	0	2449129..2449806	+	225	94314747	-	Rmet_5828	-	isochorismatase hydrolase
2201	 63.27	0	2449992..2450993	-	333	94314748	-	Rmet_5829	-	periplasmic phosphate binding protein
2202	 62.39	0	2451170..2452339	-	389	94314749	-	Rmet_5830	-	hypothetical protein
2203	 68.23	+1	2452628..2453458	+	276	94314750	-	Rmet_5831	-	LuxR family transcriptional regulator
2204	 66.50	0	2453613..2454206	+	197	94314751	-	Rmet_5832	-	response regulator receiver domain-containing protein
2205	 65.23	0	2454302..2454580	+	92	94314752	-	Rmet_5833	-	hypothetical protein
2206	 67.40	+1	2454934..2455614	+	226	94314753	-	Rmet_5834	-	phosphoesterase, PA-phosphatase related
2207	 64.96	0	2455727..2457133	+	468	94314754	-	Rmet_5835	-	sugar transferase
2208	 61.11	0	2457259..2457510	+	83	94314755	-	Rmet_5836	-	acyl carrier protein
2209	 67.00	0	2457507..2458709	+	400	94314756	-	Rmet_5837	-	acyl-CoA dehydrogenase-like protein
2210	 64.80	0	2458721..2459686	+	321	94314757	-	Rmet_5838	-	hypothetical protein
2211	 63.72	0	2459687..2460670	+	327	94314758	-	Rmet_5839	-	hypothetical protein
2212	 67.21	0	2460667..2463237	+	856	94314759	-	Rmet_5840	-	glycoside hydrolase family protein
2213	 63.79	0	2463636..2464364	+	242	94314760	-	Rmet_5841	-	Crp/FNR family transcriptional regulator
2214	 67.24	0	2464445..2465497	-	350	94314761	-	Rmet_5842	-	hypothetical protein
2215	 65.80	0	2465872..2467368	+	498	94314762	-	Rmet_5843	-	mannose-1-phosphate guanylyltransferase (GDP)
2216	 67.73	+1	2467430..2469772	+	780	94314763	-	Rmet_5844	-	lipopolysaccharide biosynthesis
2217	 67.75	+1	2469880..2471727	+	615	94314764	-	Rmet_5845	-	hypothetical protein
2218	 64.31	0	2471779..2473389	+	536	94314765	-	Rmet_5846	-	hypothetical protein
2219	 65.96	0	2473410..2474255	-	281	94314766	-	Rmet_5847	-	short-chain dehydrogenase/reductase SDR
2220	 64.07	0	2474436..2475629	+	397	94314767	-	Rmet_5848	-	hypothetical protein
2221	 64.84	0	2475711..2477957	-	748	94314768	-	Rmet_5849	-	exopolysaccharide transporter
2222	 67.47	+1	2477957..2478451	-	164	94314769	-	Rmet_5850	-	protein tyrosine phosphatase
2223	 65.56	0	2478455..2479543	-	362	94314770	-	Rmet_5851	-	polysaccharide export protein
2224	 66.67	0	2479881..2480642	+	253	94314771	-	Rmet_5852	-	hypothetical protein
2225	 66.18	0	2480677..2481909	-	410	94314772	-	Rmet_5853	-	glycosyl transferase, group 1
2226	 62.30	0	2481906..2483051	-	381	94314773	-	Rmet_5854	-	glycosyl transferase, group 1
2227	 65.06	0	2483095..2483715	-	206	94314774	-	Rmet_5855	-	putative colanic acid biosynthesis acetyltransferase WcaF
2228	 67.14	0	2483858..2485120	-	420	94314775	-	Rmet_5856	-	glycosyl transferase
2229	 63.82	0	2485443..2486846	+	467	94314776	-	Rmet_5857	-	hypothetical protein
2230	 62.36	0	2486979..2488418	-	479	94314777	-	Rmet_5858	-	hypothetical protein
2231	 65.77	0	2488457..2489458	-	333	94314778	-	Rmet_5859	-	NAD-dependent epimerase/dehydratase
2232	 63.27	0	2489442..2490647	-	401	94314779	-	Rmet_5860	-	GDP-mannose 4,6-dehydratase
2233	 65.27	0	2490827..2491756	-	309	94314780	-	Rmet_5861	-	LuxR family transcriptional regulator
2234	 69.90	+1	2492565..2492873	-	102	94314781	-	Rmet_5862	-	putative signal peptide protein
2235	 63.30	0	2493292..2493825	-	177	94314782	-	Rmet_5863	-	hypothetical protein
2236	 61.04	0	2493824..2494267	+	147	161621307	-	Rmet_5864	-	cyanate hydratase
2237	 65.45	0	2494346..2494510	-	54	94314784	-	Rmet_5865	-	hypothetical protein
2238	 68.07	+1	2494850..2495632	+	260	94314785	-	Rmet_5866	-	phosphoribosyltransferase
2239	 66.28	0	2495643..2496155	-	170	94314786	-	Rmet_5867	-	3-isopropylmalate dehydratase, small subunit
2240	 68.78	+1	2496152..2497474	-	440	94314787	-	Rmet_5868	-	3-isopropylmalate dehydratase large subunit
2241	 66.28	0	2497471..2498511	-	346	94314788	-	Rmet_5869	-	hypothetical protein
2242	 66.79	0	2498612..2499394	-	260	94314789	-	Rmet_5870	-	GntR family transcriptional regulator
63.77	MEAN

3.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.