IslandPathversion 1.0

IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.77 STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2092	 65.18	0	2330854..2331324	-	156	94314639	-	Rmet_5720	-	hypothetical protein
2093	 58.64	-1	2331528..2332586	-	352	94314640	-	Rmet_5721	-	porin
2094	 58.45	-1	2333158..2333583	+	141	94314641	-	Rmet_5722	-	XRE family transcriptional regulator
2095	 56.28	-2	2333645..2334010	+	121	94314642	-	Rmet_5723	-	hypothetical protein
2096	 57.49	-1	2334195..2336549	+	784	94314643	-	Rmet_5724	-	PAS/PAC sensor hybrid histidine kinase
2097	 56.67	-2	2336824..2337813	-	329	94314644	-	Rmet_5725	-	hypothetical protein
2098	 57.99	-1	2337954..2338679	-	241	94314645	-	Rmet_5726	-	hexapaptide repeat-containing transferase
2099	 58.06	-1	2338693..2340237	-	514	94314646	-	Rmet_5727	-	hypothetical protein
2100	 58.46	-1	2340219..2341217	-	332	94314647	-	Rmet_5728	-	glycosyl transferase, group 1
2101	 60.19	-1	2341219..2343039	-	606	94314648	-	Rmet_5729	-	polysaccharide export protein
2102	 60.70	0	2343050..2344156	-	368	94314649	-	Rmet_5730	-	chain length determinant protein
2103	 56.16	-2	2344153..2344818	-	221	94314650	-	Rmet_5731	-	ABC transporter related
2104	 56.88	-1	2344815..2345723	-	302	94314651	-	Rmet_5732	-	ABC-type polysaccharide/polyol phosphate export systems permease component
2105	 59.52	-1	2346185..2347024	+	279	94314652	-	Rmet_5733	-	2-dehydro-3-deoxyphosphooctonate aldolase
2106	 60.62	0	2347024..2347767	+	247	94314653	-	Rmet_5734	-	3-deoxy-manno-octulosonate cytidylyltransferase
2107	 60.54	0	2347807..2348769	+	320	94314654	-	Rmet_5735	-	KpsF/GutQ family protein
2108	 61.64	0	2348820..2350868	+	682	94314655	-	Rmet_5736	-	capsule polysaccharide biosynthesis
2109	 59.88	-1	2350874..2352259	+	461	94314656	-	Rmet_5737	-	capsule polysaccharide biosynthesis
2110	 55.39	-2	2353344..2353955	+	203	94314657	-	Rmet_5738	-	hypothetical protein
2111	 52.59	-2	2354087..2354434	+	115	94314658	-	Rmet_5739	-	hypothetical protein
2112	 53.49	-2	2354440..2354697	+	85	94314659	-	Rmet_5740	-	hypothetical protein
2113	 65.37	0	2354675..2356369	-	564	94314660	-	Rmet_5741	-	peptidase MprA
2114	 59.93	-1	2356695..2356961	-	88	94314661	-	Rmet_5742	-	hypothetical protein
2115	 62.03	0	2357064..2358767	-	567	94314662	-	Rmet_5743	-	AMP-dependent synthetase and ligase
2116	 60.84	0	2358964..2359392	+	142	94314663	-	Rmet_5744	-	hypothetical protein
2117	 59.30	-1	2359433..2359975	+	180	94314664	-	Rmet_5745	-	hypothetical protein
2118	 61.18	0	2359972..2360445	+	157	94314665	-	Rmet_5746	-	ferric uptake regulator family protein
2119	 68.91	+1	2360566..2360922	+	118	94314666	-	Rmet_5747	-	hypothetical protein
2120	 66.12	0	2360936..2361847	-	303	94314667	-	Rmet_5748	-	hypothetical protein
2121	 61.20	0	2362336..2362719	+	127	94314668	-	Rmet_5749	-	PadR family transcriptional regulator
2122	 63.80	0	2362900..2364645	-	581	94314669	-	Rmet_5750	-	diguanylate cyclase/phosphodiesterase
2123	 64.61	0	2364664..2366652	+	662	94314670	-	Rmet_5751	-	diguanylate cyclase
2124	 64.47	0	2366734..2367189	-	151	94314671	-	Rmet_5752	-	hypothetical protein
2125	 62.39	0	2367316..2367666	+	116	94314672	-	Rmet_5753	-	hypothetical protein
2126	 59.93	-1	2367832..2368128	+	98	94314673	-	Rmet_5754	-	fumarate hydratase, class II
2127	 61.81	0	2368117..2369145	-	342	94314674	-	Rmet_5755	-	integrase catalytic subunit
2128	 63.70	0	2369163..2370341	+	392	94314675	-	Rmet_5756	-	fumarate lyase
2129	 61.77	0	2370457..2371620	-	387	94314676	-	Rmet_5757	-	porin
2130	 64.41	0	2371847..2373178	-	443	94314677	-	Rmet_5758	-	major facilitator transporter
2131	 63.60	0	2373228..2374337	-	369	94314678	-	Rmet_5759	-	hypothetical protein
2132	 64.05	0	2374350..2375153	-	267	94314679	-	Rmet_5760	-	peptidase C26
2133	 62.66	0	2375270..2376217	+	315	94314680	-	Rmet_5761	-	LysR family transcriptional regulator
2134	 64.80	0	2376371..2376907	+	178	94314681	-	Rmet_5762	-	hypothetical protein
2135	 63.91	0	2376904..2377410	+	168	94314682	-	Rmet_5763	-	hypothetical protein
2136	 65.77	0	2377442..2377885	-	147	94314683	-	Rmet_5764	-	hypothetical protein
2137	 65.03	0	2378004..2378432	+	142	94314684	-	Rmet_5765	-	hypothetical protein
2138	 60.47	0	2378523..2378780	+	85	94314685	-	Rmet_5766	-	hypothetical protein
2139	 62.73	0	2378908..2379669	-	253	94314686	-	Rmet_5767	-	Crp/FNR family transcriptional regulator
2140	 67.40	+1	2379759..2381393	+	544	94314687	-	Rmet_5768	-	acyl-CoA synthetase
2141	 67.05	0	2381481..2383064	-	527	94314688	-	Rmet_5769	-	hypothetical protein
2142	 66.77	0	2383234..2384157	-	307	94314689	-	Rmet_5770	-	2-dehydropantoate 2-reductase
2143	 64.61	0	2384724..2385500	+	258	94314690	-	Rmet_5771	-	enoyl-CoA hydratase
2144	 67.37	+1	2385558..2385986	-	142	94314691	-	Rmet_5772	-	MarR family transcriptional regulator
2145	 63.33	0	2386144..2386473	-	109	94314692	-	Rmet_5773	-	calcium-binding EF-hand
2146	 64.83	0	2387014..2387883	+	289	94314693	-	Rmet_5774	-	hypothetical protein
2147	 66.24	0	2387977..2388684	+	235	94314694	-	Rmet_5775	-	haloacid dehalogenase-like hydrolase
2148	 65.59	0	2388724..2389749	-	341	94314695	-	Rmet_5776	-	hypothetical protein
2149	 65.77	0	2389773..2390108	-	111	94314696	-	Rmet_5777	-	cupin 2, barrel
2150	 66.11	0	2390618..2391694	+	358	94314697	-	Rmet_5778	-	porin
2151	 62.94	0	2391740..2392195	+	151	94314698	-	Rmet_5779	-	hypothetical protein
2152	 64.69	0	2392271..2392978	+	235	94314699	-	Rmet_5780	-	hypothetical protein
2153	 62.81	0	2392980..2393627	+	215	94314700	-	Rmet_5781	-	hypothetical protein
2154	 57.19	-1	2393856..2394161	+	101	94314701	-	Rmet_5782	-	hypothetical protein
2155	 63.54	0	2394158..2395819	+	553	94314702	actP	Rmet_5783	-	acetate permease
2156	 70.25	+1	2395848..2396126	-	92	94314703	-	Rmet_5784	-	hypothetical protein
2157	 62.78	0	2396296..2396475	+	59	94314704	-	Rmet_5785	-	hypothetical protein
2158	 64.45	0	2396558..2397820	+	420	94314705	-	Rmet_5786	-	beta-lactamase
2159	 61.85	0	2397883..2398131	+	82	94314706	-	Rmet_5787	-	hypothetical protein
2160	 62.35	0	2398214..2398861	-	215	94314707	-	Rmet_5788	-	DSBA oxidoreductase
2161	 60.00	-1	2399100..2399294	+	64	94314708	-	Rmet_5789	-	hypothetical protein
2162	 63.66	0	2399376..2399741	-	121	94314709	-	Rmet_5790	-	cytochrome C oxidase subunit IV
2163	 64.32	0	2399738..2400418	-	226	94314710	-	Rmet_5791	-	cytochrome c oxidase, subunit III
2164	 61.96	0	2400421..2402397	-	658	94314711	-	Rmet_5792	-	cytochrome c oxidase, subunit I
2165	 64.06	0	2402401..2403360	-	319	94314712	-	Rmet_5793	-	ubiquinol oxidase, subunit II
2166	 68.53	+1	2403472..2404869	+	465	94314713	-	Rmet_5794	-	GntR family transcriptional regulator
2167	 66.93	0	2404879..2406783	-	634	94314714	-	Rmet_5795	-	OPT superfamily oligopeptide transporter
2168	 66.57	0	2406794..2407801	+	335	94314715	-	Rmet_5796	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
2169	 68.09	+1	2407814..2409145	-	443	94314716	-	Rmet_5797	-	periplasmic sensor signal transduction histidine kinase
2170	 67.63	+1	2409145..2409873	-	242	94314717	-	Rmet_5798	-	two component transcriptional regulator
2171	 69.34	+1	2409880..2410890	-	336	94314718	-	Rmet_5799	-	glucokinase
2172	 66.81	0	2410895..2411575	-	226	94314719	-	Rmet_5800	-	6-phosphogluconolactonase
2173	 65.53	0	2411657..2413147	-	496	94314720	-	Rmet_5801	-	glucose-6-phosphate 1-dehydrogenase
2174	 66.90	0	2413151..2415253	+	700	94314721	-	Rmet_5802	-	phosphogluconate dehydratase
2175	 66.08	0	2415367..2416221	-	284	94314722	-	Rmet_5803	-	MscS mechanosensitive ion channel
2176	 67.54	+1	2416352..2417269	-	305	94314723	-	Rmet_5804	-	AraC family transcriptional regulator
2177	 65.79	0	2417341..2418600	-	419	94314724	-	Rmet_5805	-	major facilitator transporter
2178	 62.52	0	2418875..2421070	+	731	94314725	-	Rmet_5806	-	TonB-dependent siderophore receptor
2179	 63.14	0	2421332..2423485	+	717	94314726	-	Rmet_5807	-	TonB-dependent siderophore receptor
2180	 64.09	0	2423560..2425152	-	530	94314727	prfC	Rmet_5808	-	peptide chain release factor 3
2181	 64.70	0	2425249..2426214	-	321	94314728	-	Rmet_5809	-	ribonuclease BN, putative
2182	 66.67	0	2426337..2426630	+	97	94314729	-	Rmet_5810	-	hypothetical protein
2183	 62.69	0	2426717..2427169	-	150	94314730	-	Rmet_5811	-	hypothetical protein
2184	 65.11	0	2427496..2427816	+	106	94314731	-	Rmet_5812	-	hypothetical protein
2185	 65.00	0	2427981..2429483	-	500	94314732	-	Rmet_5813	-	sigma-54 dependent trancsriptional regulator
2186	 62.55	0	2429480..2429965	-	161	94314733	-	Rmet_5814	-	hypothetical protein
2187	 62.63	0	2430556..2431917	-	453	94314734	-	Rmet_5815	-	xanthine/uracil/vitamin C permease
2188	 56.86	-1	2432243..2432446	+	67	94314735	-	Rmet_5816	-	cold-shock DNA-binding protein family protein
2189	 59.00	-1	2433946..2435040	+	364	94314736	-	Rmet_5817	-	plasmid encoded RepA protein
2190	 55.39	-2	2435143..2435346	-	67	94314737	-	Rmet_5818	-	cold-shock DNA-binding protein family protein
2191	 59.97	-1	2435768..2436424	+	218	94314738	-	Rmet_5819	-	cobyrinic acid a,c-diamide synthase
63.77	MEAN

3.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.