IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.77   STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2016	 67.01	0	2257832..2259268	-	478	94314563	-	Rmet_5644	-	carotenoid oxygenase
2017	 64.53	0	2259481..2260554	+	357	94314564	-	Rmet_5645	-	zinc-binding alcohol dehydrogenase
2018	 64.08	0	2260747..2261442	+	231	94314565	-	Rmet_5646	-	LuxR family transcriptional regulator
2019	 63.98	0	2261488..2262009	-	173	94314566	-	Rmet_5647	-	hypothetical protein
2020	 64.54	0	2262246..2262668	+	140	94314567	-	Rmet_5648	-	AsnC family transcriptional regulator
2021	 63.47	0	2262688..2263125	-	145	94314568	-	Rmet_5649	-	hypothetical protein
2022	 64.05	0	2263518..2263823	+	101	94314569	-	Rmet_5650	-	hypothetical protein
2023	 61.84	0	2264000..2264206	+	68	94314570	-	Rmet_5651	-	hypothetical protein
2024	 62.94	0	2264651..2265133	+	160	94314571	-	Rmet_5652	-	hypothetical protein
2025	 62.65	0	2265139..2266680	+	513	94314572	-	Rmet_5653	-	hypothetical protein
2026	 63.08	0	2266858..2267247	+	129	94314573	-	Rmet_5654	-	putative dehydrogenase
2027	 66.97	0	2267349..2267681	+	110	94314574	-	Rmet_5655	-	hypothetical protein
2028	 66.25	0	2267694..2268170	-	158	94314575	-	Rmet_5656	-	hypothetical protein
2029	 65.95	0	2268480..2269733	+	417	94314576	-	Rmet_5657	-	putative heat shock protein
2030	 64.06	0	2269758..2270945	-	395	94314577	-	Rmet_5658	-	diguanylate cyclase
2031	 62.55	0	2270994..2271527	-	177	94314578	-	Rmet_5659	-	isochorismatase hydrolase
2032	 63.61	0	2271683..2274202	-	839	94314579	-	Rmet_5660	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
2033	 63.11	0	2274377..2274742	-	121	94314580	-	Rmet_5661	-	hypothetical protein
2034	 61.99	0	2274815..2275156	+	113	94314581	-	Rmet_5662	-	hypothetical protein
2035	 64.61	0	2275206..2276273	-	355	94314582	-	Rmet_5663	-	periplasmic phosphate binding protein
2036	 70.08	+1	2276464..2276961	-	165	94314583	-	Rmet_5664	-	hypothetical protein
2037	 66.05	0	2277130..2278104	-	324	94314584	-	Rmet_5665	-	NmrA-like protein
2038	 66.45	0	2278221..2279141	+	306	94314585	-	Rmet_5666	-	LysR family transcriptional regulator
2039	 56.17	-2	2279403..2279783	+	126	94314586	-	Rmet_5667	-	hypothetical protein
2040	 66.22	0	2279814..2280713	-	299	94314587	-	Rmet_5668	-	copper resistance D
2041	 64.86	0	2280732..2281118	-	128	94314588	-	Rmet_5669	-	copper resistance protein CopC
2042	 64.54	0	2281157..2282239	-	360	94314589	-	Rmet_5670	-	copper resistance B precursor
2043	 64.41	0	2282236..2284053	-	605	94314590	-	Rmet_5671	-	copper-resistance protein CopA
2044	 65.07	0	2284249..2284935	+	228	94314591	-	Rmet_5672	-	two component heavy metal response transcriptional regulator
2045	 65.08	0	2284935..2286323	+	462	94314592	-	Rmet_5673	-	heavy metal sensor signal transduction histidine kinase
2046	 68.06	+1	2286324..2286755	-	143	94314593	-	Rmet_5674	-	protein of unknown function DUF395, YeeE/YedE
2047	 66.67	0	2286757..2287194	-	145	94314594	-	Rmet_5675	-	protein of unknown function DUF395, YeeE/YedE
2048	 62.62	0	2287204..2287524	-	106	94314595	-	Rmet_5676	-	ArsR family transcriptional regulator
2049	 68.65	+1	2287658..2288917	-	419	94314596	-	Rmet_5677	-	hypothetical protein
2050	 66.58	0	2288914..2290011	-	365	94314597	-	Rmet_5678	-	heavy metal efflux pump CzcA
2051	 61.74	0	2290023..2290916	-	297	94314598	-	Rmet_5679	-	integrase catalytic subunit
2052	 59.93	-1	2290913..2291209	-	98	94314599	-	Rmet_5680	-	transposase IS3/IS911
2053	 66.23	0	2291237..2293312	-	691	94314600	-	Rmet_5681	-	acriflavin resistance protein
2054	 70.30	+1	2293312..2294412	-	366	94314601	-	Rmet_5682	-	secretion protein HlyD
2055	 62.89	0	2294500..2294949	-	149	94314602	-	Rmet_5683	-	hypothetical protein
2056	 64.88	0	2295247..2295750	+	167	94314603	-	Rmet_5684	-	pilus assembly protein PilE
2057	 66.67	0	2295754..2296248	+	164	94314604	-	Rmet_5685	-	pilus assembly protein FimT
2058	 67.16	0	2296248..2296856	+	202	94314605	-	Rmet_5686	-	Tfp pilus assembly protein PilV-like protein
2059	 65.13	0	2296853..2297896	+	347	94314606	-	Rmet_5687	-	type 4 fimbrial biogenesis pilw-related protein transmembrane precursor
2060	 62.45	0	2297893..2298438	+	181	94314607	-	Rmet_5688	-	putative transmembrane protein
2061	 63.31	0	2298484..2301792	+	1102	94314608	-	Rmet_5689	-	putative type 4 fimbrial biogenesis pily1-related protein signal peptide
2062	 64.99	0	2301898..2303091	+	397	94314609	-	Rmet_5690	-	putative lipoprotein
2063	 65.12	0	2303244..2304017	-	257	94314610	-	Rmet_5691	-	protein of unknown function DUF899, thioredoxin-like protein
2064	 69.53	+1	2304107..2305327	+	406	94314611	-	Rmet_5692	-	hypothetical protein
2065	 65.73	0	2305357..2305995	+	212	94314612	-	Rmet_5693	-	hypothetical protein
2066	 63.86	0	2306056..2306697	-	213	94314613	-	Rmet_5694	-	hypothetical protein
2067	 65.18	0	2306740..2307615	+	291	94314614	-	Rmet_5695	-	beta-lactamase-like protein
2068	 66.43	0	2307665..2308084	+	139	94314615	-	Rmet_5696	-	hypothetical protein
2069	 64.08	0	2308215..2308523	-	102	94314616	-	Rmet_5697	-	hypothetical protein
2070	 58.02	-1	2309643..2309885	+	80	94314617	-	Rmet_5698	-	hypothetical protein
2071	 65.03	0	2310009..2311352	-	447	94314618	-	Rmet_5699	-	hypothetical protein
2072	 64.02	0	2311374..2312054	-	226	94314619	-	Rmet_5700	-	hypothetical protein
2073	 64.43	0	2312128..2313201	-	357	94314620	-	Rmet_5701	-	hypothetical protein
2074	 62.08	0	2313192..2314346	-	384	94314621	-	Rmet_5702	-	hypothetical protein
2075	 58.25	-1	2314488..2315402	-	304	94314622	-	Rmet_5703	-	two component transcriptional regulator
2076	 58.26	-1	2315443..2315763	+	106	94314623	-	Rmet_5704	-	hypothetical protein
2077	 64.11	0	2316097..2316801	+	234	94314624	-	Rmet_5705	-	MIP family channel protein
2078	 66.67	0	2316818..2317198	+	126	94314625	-	Rmet_5706	-	hypothetical protein
2079	 62.23	0	2317479..2318312	+	277	94314626	-	Rmet_5707	-	two component transcriptional regulator
2080	 61.16	0	2318563..2319252	-	229	94314627	-	Rmet_5708	-	SmpA/OmlA
2081	 59.77	-1	2319436..2319696	-	86	94314628	-	Rmet_5709	-	hypothetical protein
2082	 61.77	0	2320130..2323252	+	1040	94314629	-	Rmet_5710	-	PAS/PAC sensor hybrid histidine kinase
2083	 62.37	0	2323436..2324902	+	488	94314630	-	Rmet_5711	-	tetratricopeptide TPR_2
2084	 64.50	0	2324929..2325159	+	76	94314631	-	Rmet_5712	-	TPR repeat-containing protein
2085	 61.19	0	2325195..2325869	-	224	94314632	-	Rmet_5713	-	Hpt domain-containing protein
2086	 55.45	-2	2325884..2326516	-	210	94314633	-	Rmet_5714	-	two component LuxR family transcriptional regulator
2087	 49.37	-2	2326812..2327129	-	105	94314634	-	Rmet_5715	-	hypothetical protein
2088	 60.35	0	2327314..2328105	+	263	94314635	-	Rmet_5716	-	hypothetical protein
2089	 63.64	0	2328161..2328721	-	186	94314636	-	Rmet_5717	-	putative serine protease protein
2090	 61.81	0	2328739..2329767	+	342	94314637	-	Rmet_5718	-	integrase catalytic subunit
2091	 61.55	0	2329756..2330790	-	344	94314638	-	Rmet_5719	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
2092	 65.18	0	2330854..2331324	-	156	94314639	-	Rmet_5720	-	hypothetical protein
2093	 58.64	-1	2331528..2332586	-	352	94314640	-	Rmet_5721	-	porin
2094	 58.45	-1	2333158..2333583	+	141	94314641	-	Rmet_5722	-	XRE family transcriptional regulator
2095	 56.28	-2	2333645..2334010	+	121	94314642	-	Rmet_5723	-	hypothetical protein
2096	 57.49	-1	2334195..2336549	+	784	94314643	-	Rmet_5724	-	PAS/PAC sensor hybrid histidine kinase
2097	 56.67	-2	2336824..2337813	-	329	94314644	-	Rmet_5725	-	hypothetical protein
2098	 57.99	-1	2337954..2338679	-	241	94314645	-	Rmet_5726	-	hexapaptide repeat-containing transferase
2099	 58.06	-1	2338693..2340237	-	514	94314646	-	Rmet_5727	-	hypothetical protein
2100	 58.46	-1	2340219..2341217	-	332	94314647	-	Rmet_5728	-	glycosyl transferase, group 1
2101	 60.19	-1	2341219..2343039	-	606	94314648	-	Rmet_5729	-	polysaccharide export protein
2102	 60.70	0	2343050..2344156	-	368	94314649	-	Rmet_5730	-	chain length determinant protein
2103	 56.16	-2	2344153..2344818	-	221	94314650	-	Rmet_5731	-	ABC transporter related
2104	 56.88	-1	2344815..2345723	-	302	94314651	-	Rmet_5732	-	ABC-type polysaccharide/polyol phosphate export systems permease component
2105	 59.52	-1	2346185..2347024	+	279	94314652	-	Rmet_5733	-	2-dehydro-3-deoxyphosphooctonate aldolase
2106	 60.62	0	2347024..2347767	+	247	94314653	-	Rmet_5734	-	3-deoxy-manno-octulosonate cytidylyltransferase
2107	 60.54	0	2347807..2348769	+	320	94314654	-	Rmet_5735	-	KpsF/GutQ family protein
2108	 61.64	0	2348820..2350868	+	682	94314655	-	Rmet_5736	-	capsule polysaccharide biosynthesis
2109	 59.88	-1	2350874..2352259	+	461	94314656	-	Rmet_5737	-	capsule polysaccharide biosynthesis
2110	 55.39	-2	2353344..2353955	+	203	94314657	-	Rmet_5738	-	hypothetical protein
2111	 52.59	-2	2354087..2354434	+	115	94314658	-	Rmet_5739	-	hypothetical protein
2112	 53.49	-2	2354440..2354697	+	85	94314659	-	Rmet_5740	-	hypothetical protein
2113	 65.37	0	2354675..2356369	-	564	94314660	-	Rmet_5741	-	peptidase MprA
2114	 59.93	-1	2356695..2356961	-	88	94314661	-	Rmet_5742	-	hypothetical protein
2115	 62.03	0	2357064..2358767	-	567	94314662	-	Rmet_5743	-	AMP-dependent synthetase and ligase
63.77	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.