IslandPathversion 1.0

IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.77 STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1879	 55.09	-2	2103729..2104886	-	385	94314426	-	Rmet_5507	-	acyl-CoA dehydrogenase-like protein
1880	 57.84	-1	2104904..2106931	-	675	94314427	-	Rmet_5508	-	AMP-dependent synthetase and ligase
1881	 58.68	-1	2107020..2107595	+	191	94314428	-	Rmet_5509	-	short-chain dehydrogenase/reductase SDR
1882	 59.39	-1	2107627..2108835	+	402	94314429	-	Rmet_5510	-	thiolase
1883	 57.76	-1	2108844..2110988	+	714	94314430	-	Rmet_5511	-	short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase
1884	 58.54	-1	2111002..2111862	+	286	94314431	-	Rmet_5512	-	enoyl-CoA hydratase/isomerase
1885	 57.69	-1	2111901..2112947	+	348	94314432	-	Rmet_5513	-	AraC family transcriptional regulator
1886	 58.99	-1	2112944..2113738	-	264	94314433	-	Rmet_5514	-	short-chain dehydrogenase/reductase SDR
1887	 57.64	-1	2113775..2115214	-	479	94314434	-	Rmet_5515	-	aldehyde dehydrogenase
1888	 55.12	-2	2115211..2116500	-	429	94314435	-	Rmet_5516	-	cytochrome P450
1889	 57.03	-1	2116530..2117525	-	331	94314436	-	Rmet_5517	-	ferredoxin
1890	 64.63	0	2117960..2118892	-	310	94314437	-	Rmet_5518	-	electron transfer flavoprotein, alpha subunit
1891	 63.33	0	2118911..2119660	-	249	94314438	-	Rmet_5519	-	electron transfer flavoprotein beta-subunit
1892	 57.19	-1	2119733..2120608	-	291	94314439	-	Rmet_5520	-	MaoC-like dehydratase
1893	 58.39	-1	2120601..2121422	-	273	94314440	-	Rmet_5521	-	enoyl-CoA hydratase/isomerase
1894	 55.11	-2	2121419..2122456	-	345	94314441	-	Rmet_5522	-	hypothetical protein
1895	 58.31	-1	2122497..2123561	-	354	94314442	-	Rmet_5523	-	aminoglycoside phosphotransferase
1896	 59.43	-1	2123564..2124337	-	257	94314443	-	Rmet_5524	-	short-chain dehydrogenase/reductase SDR
1897	 58.75	-1	2124495..2125631	+	378	94314444	-	Rmet_5525	-	L-carnitine dehydratase/bile acid-inducible protein F
1898	 57.65	-1	2125688..2126053	-	121	94314445	-	Rmet_5526	-	hypothetical protein
1899	 58.23	-1	2126070..2127005	-	311	94314446	-	Rmet_5527	-	aminoglycoside phosphotransferase
1900	 57.12	-1	2127077..2128606	-	509	94314447	-	Rmet_5528	-	acyl-CoA synthetase
1901	 59.56	-1	2128642..2129781	-	379	94314448	-	Rmet_5529	-	acyl-CoA dehydrogenase-like protein
1902	 57.71	-1	2129791..2130951	-	386	94314449	-	Rmet_5530	-	acyl-CoA dehydrogenase-like protein
1903	 57.24	-1	2131041..2131952	+	303	94314450	-	Rmet_5531	-	GntR family transcriptional regulator
1904	 57.34	-1	2131973..2132776	+	267	94314451	-	Rmet_5532	-	GntR family transcriptional regulator
1905	 59.88	-1	2132777..2133469	-	230	94314452	-	Rmet_5533	-	nitroreductase
1906	 57.92	-1	2133521..2134492	-	323	94314453	-	Rmet_5534	-	2-nitropropane dioxygenase, NPD
1907	 57.31	-1	2134587..2135708	-	373	94314454	-	Rmet_5535	-	L-carnitine dehydratase/bile acid-inducible protein F
1908	 56.65	-2	2135915..2136493	+	192	94314455	-	Rmet_5536	-	hypothetical protein
1909	 55.70	-2	2136499..2136972	+	157	94314456	-	Rmet_5537	-	MaoC-like dehydratase
1910	 58.10	-1	2137149..2138303	-	384	94314457	-	Rmet_5538	-	acyl-CoA dehydrogenase-like protein
1911	 59.15	-1	2138402..2138827	-	141	94314458	-	Rmet_5539	-	hypothetical protein
1912	 57.90	-1	2138824..2139918	-	364	94314459	-	Rmet_5540	-	thiolase family protein
1913	 63.64	0	2140031..2140888	-	285	94314460	-	Rmet_5541	-	integrase catalytic subunit
1914	 65.19	0	2140942..2141280	-	112	94314461	-	Rmet_5542	-	transposase IS3/IS911
1915	 58.85	-1	2141365..2142630	-	421	94314462	-	Rmet_5543	-	L-carnitine dehydratase/bile acid-inducible protein F
1916	 56.33	-2	2143067..2144527	-	486	94314463	-	Rmet_5544	-	aldehyde dehydrogenase
1917	 58.26	-1	2144544..2145602	-	352	94314464	-	Rmet_5545	-	alcohol dehydrogenase GroES-like protein
1918	 56.03	-2	2145616..2146659	-	347	94314465	-	Rmet_5546	-	Rieske (2Fe-2S) region
1919	 56.08	-2	2146780..2147610	-	276	94314466	-	Rmet_5547	-	LuxR family transcriptional regulator
1920	 59.92	-1	2148097..2149416	+	439	94314467	-	Rmet_5548	-	Rieske (2Fe-2S) region
1921	 58.90	-1	2149432..2150397	+	321	94314468	-	Rmet_5549	-	ferredoxin
1922	 60.86	0	2150439..2151161	+	240	94314469	-	Rmet_5550	-	GntR family transcriptional regulator
1923	 59.55	-1	2151207..2152175	+	322	94314470	-	Rmet_5551	-	hypothetical protein
1924	 60.00	-1	2152190..2153479	+	429	94314471	-	Rmet_5552	-	L-carnitine dehydratase/bile acid-inducible protein F
1925	 59.64	-1	2153506..2154657	+	383	94314472	-	Rmet_5553	-	hypothetical protein
1926	 58.02	-1	2154654..2155127	+	157	94314473	-	Rmet_5554	-	hypothetical protein
1927	 59.35	-1	2155187..2156854	+	555	94314474	-	Rmet_5555	-	putative FAD-binding dehydrogenase
1928	 58.56	-1	2156859..2157968	+	369	94314475	-	Rmet_5556	-	L-carnitine dehydratase/bile acid-inducible protein F
1929	 57.23	-1	2158007..2158801	+	264	94314476	-	Rmet_5557	-	short chain enoyl-CoA hydratase
1930	 57.92	-1	2159068..2159490	-	140	94314477	-	Rmet_5558	-	histone-like DNA-binding protein
1931	 46.28	-2	2160214..2162616	+	800	94314478	-	Rmet_5559	-	hypothetical protein
1932	 50.72	-2	2162721..2163692	+	323	94314479	-	Rmet_5560	-	hypothetical protein
1933	 56.22	-2	2163928..2167968	-	1346	94314480	-	Rmet_5561	-	XRE family transcriptional regulator
1934	 60.00	-1	2168168..2168482	-	104	94314481	-	Rmet_5562	-	H-NS family DNA-binding protein
1935	 54.64	-2	2168617..2170995	+	792	94314482	-	Rmet_5563	-	hypothetical protein
1936	 55.49	-2	2171170..2171706	-	178	94314483	-	Rmet_5564	-	hypothetical protein
1937	 59.33	-1	2172041..2172340	+	99	94314484	-	Rmet_5565	-	hypothetical protein
1938	 55.11	-2	2172992..2173666	-	224	94314485	-	Rmet_5566	-	hypothetical protein
1939	 54.00	-2	2173673..2174272	-	199	94314486	-	Rmet_5567	-	hypothetical protein
1940	 58.06	-1	2174559..2175209	-	216	94314487	-	Rmet_5568	-	hypothetical protein
1941	 67.94	+1	2176137..2176844	+	235	94314488	-	Rmet_5569	-	ArsR family transcriptional regulator
1942	 60.75	0	2176835..2177341	+	168	94314489	-	Rmet_5570	-	hypothetical protein
1943	 64.86	0	2177345..2178343	-	332	94314490	-	Rmet_5571	-	LysR family transcriptional regulator
1944	 63.19	0	2178697..2179644	-	315	94314491	-	Rmet_5572	-	Dyp-type peroxidase
1945	 66.67	0	2179855..2180760	-	301	94314492	-	Rmet_5573	-	LysR family transcriptional regulator
1946	 68.08	+1	2180921..2181913	+	330	94314493	-	Rmet_5574	-	hypothetical protein
1947	 66.86	0	2181971..2182990	+	339	94314494	-	Rmet_5575	-	hypothetical protein
1948	 69.04	+1	2183020..2184243	+	407	94314495	-	Rmet_5576	-	aminotransferase, class I and II
1949	 62.04	0	2184253..2184576	-	107	94314496	-	Rmet_5577	-	hypothetical protein
1950	 54.31	-2	2184785..2185051	+	88	94314497	-	Rmet_5578	-	hypothetical protein
1951	 67.75	+1	2185054..2185608	+	184	94314498	-	Rmet_5579	-	cytochrome B561
1952	 65.96	0	2185916..2187184	+	422	94314499	-	Rmet_5580	-	D-amino acid dehydrogenase small subunit
1953	 66.00	0	2187411..2189057	-	548	94314500	-	Rmet_5581	-	diguanylate cyclase
1954	 66.07	0	2189095..2189601	+	168	94314501	-	Rmet_5582	-	hypothetical protein
1955	 69.30	+1	2189634..2189975	+	113	94314502	-	Rmet_5583	-	hypothetical protein
1956	 61.01	0	2190040..2190552	-	170	94314503	-	Rmet_5584	-	putative transmembrane protein
1957	 66.39	0	2190686..2192128	-	480	94314504	-	Rmet_5585	-	major facilitator transporter
1958	 68.06	+1	2192127..2193128	+	333	94314505	-	Rmet_5586	-	LysR family transcriptional regulator
1959	 64.60	0	2193179..2193565	+	128	94314506	-	Rmet_5587	-	hypothetical protein
1960	 64.80	0	2193586..2195190	-	534	94314507	-	Rmet_5588	-	phospholipase D/transphosphatidylase
1961	 63.16	0	2195212..2196039	-	275	94314508	-	Rmet_5589	-	MscS mechanosensitive ion channel
1962	 67.08	0	2196343..2197800	-	485	94314509	-	Rmet_5590	-	RND efflux system, outer membrane lipoprotein, NodT
1963	 64.76	0	2197803..2199377	-	524	94314510	-	Rmet_5591	-	EmrB/QacA family drug resistance transporter
1964	 66.49	0	2199370..2200515	-	381	94314511	-	Rmet_5592	-	secretion protein HlyD
1965	 64.53	0	2200623..2201324	+	233	94314512	-	Rmet_5593	-	TetR family transcriptional regulator
1966	 68.47	+1	2201748..2202245	+	165	94314513	-	Rmet_5594	-	hypothetical protein
1967	 59.14	-1	2202631..2203095	+	154	94314514	-	Rmet_5595	-	Kef-type K+ transport system NAD-binding component-related membrane protein
1968	 65.56	0	2203277..2204176	+	299	94314515	-	Rmet_5596	-	MltA-interacting MipA
1969	 66.53	0	2204200..2204913	-	237	94314516	-	Rmet_5597	-	alpha/beta family hydrolase
1970	 64.10	0	2204992..2205303	-	103	94314517	-	Rmet_5598	-	hypothetical protein
1971	 62.17	0	2205973..2207418	+	481	94314518	-	Rmet_5599	-	catalase-like protein
1972	 65.30	0	2207511..2208023	+	170	94314519	-	Rmet_5600	-	ankyrin
1973	 64.69	0	2208081..2208839	-	252	94314520	-	Rmet_5601	-	short-chain dehydrogenase/reductase SDR
1974	 67.22	0	2208949..2210040	-	363	94314521	-	Rmet_5602	-	L-threonine ammonia-lyase
1975	 65.82	0	2210511..2212280	+	589	94314522	-	Rmet_5603	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1976	 66.25	0	2212280..2213722	+	480	94314523	-	Rmet_5604	-	putative signal transduction protein
1977	 64.52	0	2213742..2214392	-	216	94314524	-	Rmet_5605	-	carbonic anhydrase
1978	 66.89	0	2214500..2215402	+	300	161621308	-	Rmet_5606	-	DNA-binding transcriptional regulator CynR
63.77	MEAN

3.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.