IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.77   STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1823	 60.65	0	2053126..2053773	+	215	94314370	-	Rmet_5451	-	hypothetical protein
1824	 61.74	0	2053811..2054704	-	297	94314371	-	Rmet_5452	-	integrase catalytic subunit
1825	 59.93	-1	2054701..2054997	-	98	94314372	-	Rmet_5453	-	transposase IS3/IS911
1826	 53.68	-2	2055056..2055571	-	171	94314373	-	Rmet_5454	-	transposon Tn7 transposition protein TnsC
1827	 58.22	-1	2055568..2056419	-	283	94314374	-	Rmet_5455	-	integrase catalytic subunit
1828	 57.51	-1	2056437..2056709	-	90	94314375	-	Rmet_5456	-	transposase IS3/IS911
1829	 53.86	-2	2056734..2057537	-	267	94314376	-	Rmet_5457	-	Tn7-like transposition protein C
1830	 57.16	-1	2057521..2059698	-	725	94314377	-	Rmet_5458	-	hypothetical protein
1831	 58.07	-1	2059698..2060651	-	317	94314378	-	Rmet_5459	-	hypothetical protein
1832	 60.03	-1	2061000..2061737	-	245	94314379	-	Rmet_5460	-	hypothetical protein
1833	 52.32	-2	2061759..2062253	+	164	94314380	-	Rmet_5461	-	hypothetical protein
1834	 58.40	-1	2062489..2062839	-	116	94314381	-	Rmet_5462	-	hypothetical protein
1835	 58.11	-1	2063138..2063359	-	73	94314382	-	Rmet_5463	-	hypothetical protein
1836	 59.29	-1	2063375..2063686	+	103	94314383	-	Rmet_5464	-	hypothetical protein
1837	 55.28	-2	2063836..2064327	-	163	94314384	-	Rmet_5465	-	hypothetical protein
1838	 53.77	-2	2064467..2064784	-	105	94314385	-	Rmet_5466	-	hypothetical protein
1839	 54.78	-2	2064878..2066038	-	386	94314386	-	Rmet_5467	-	hypothetical protein
1840	 52.80	-2	2066023..2066469	-	148	94314387	-	Rmet_5468	-	hypothetical protein
1841	 57.25	-1	2066578..2067267	-	229	94314388	-	Rmet_5469	-	hypothetical protein
1842	 58.44	-1	2068357..2069085	-	242	94314389	-	Rmet_5470	-	GntR family transcriptional regulator
1843	 58.69	-1	2069198..2069761	-	187	94314390	-	Rmet_5471	-	tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit
1844	 57.53	-1	2069775..2070617	-	280	94314391	-	Rmet_5472	-	fumarate hydratase
1845	 60.51	0	2070623..2071792	-	389	94314392	-	Rmet_5473	-	mandelate racemase/muconate lactonizing enzyme
1846	 59.35	-1	2071803..2072786	-	327	94314393	-	Rmet_5474	-	hypothetical protein
1847	 58.02	-1	2073381..2073704	+	107	94314394	-	Rmet_5475	-	hypothetical protein
1848	 56.10	-2	2073846..2074091	+	81	94314395	-	Rmet_5476	-	hypothetical protein
1849	 65.26	0	2074275..2074772	+	165	94314396	-	Rmet_5477	-	hypothetical protein
1850	 61.11	0	2074914..2075129	-	71	94314397	-	Rmet_5478	-	hypothetical protein
1851	 65.59	0	2075183..2076016	-	277	94314398	-	Rmet_5479	-	ATPase
1852	 65.56	0	2076013..2077452	-	479	94314399	-	Rmet_5480	-	integrase catalytic subunit
1853	 64.39	0	2077564..2078133	-	189	94314400	-	Rmet_5481	-	hypothetical protein
1854	 64.07	0	2078196..2078618	+	140	94314401	-	Rmet_5482	-	hypothetical protein
1855	 57.52	-1	2078870..2079667	+	265	94314402	-	Rmet_5483	-	DNA adenine methylase Dam
1856	 57.35	-1	2079754..2080161	+	135	94314403	-	Rmet_5484	-	hypothetical protein
1857	 53.20	-2	2080222..2080518	-	98	94314404	-	Rmet_5485	-	hypothetical protein
1858	 58.61	-1	2080801..2081706	-	301	94314405	-	Rmet_5486	-	hypothetical protein
1859	 57.66	-1	2081873..2083648	-	591	94314406	-	Rmet_5487	-	superfamily I DNA/RNA helicase-like protein
1860	 54.26	-2	2083641..2085437	-	598	94314407	-	Rmet_5488	-	putative exonuclease
1861	 61.54	0	2086242..2086475	+	77	94314408	-	Rmet_5489	-	hypothetical protein
1862	 56.91	-1	2087533..2088711	-	392	94314409	-	Rmet_5490	-	4-hydroxybenzoate 3-monooxygenase
1863	 60.25	-1	2089080..2090045	+	321	94314410	-	Rmet_5491	-	hypothetical protein
1864	 57.51	-1	2090060..2091763	+	567	94314411	-	Rmet_5492	-	putative succinate dehydrogenase
1865	 58.05	-1	2091760..2092107	+	115	94314412	-	Rmet_5493	-	NIPSNAP domain-containing protein
1866	 57.17	-1	2092203..2093192	+	329	94314413	-	Rmet_5494	-	hypothetical protein
1867	 58.27	-1	2093344..2094141	-	265	94314414	-	Rmet_5495	-	zinc-binding alcohol dehydrogenase
1868	 57.51	-1	2094179..2094451	+	90	94314415	-	Rmet_5496	-	transposase IS3/IS911
1869	 58.22	-1	2094469..2095320	+	283	94314416	-	Rmet_5497	-	integrase catalytic subunit
1870	 57.32	-1	2095325..2095570	-	81	94314417	-	Rmet_5498	-	oxidoreductase, zinc-binding
1871	 60.54	0	2095745..2096920	+	391	94314418	-	Rmet_5499	-	acetyl-CoA acetyltransferase
1872	 55.39	-2	2096924..2097322	+	132	94314419	-	Rmet_5500	-	hypothetical protein
1873	 57.86	-1	2097334..2098128	+	264	94314420	-	Rmet_5501	-	enoyl-CoA hydratase
1874	 57.11	-1	2098131..2098946	+	271	94314421	-	Rmet_5502	-	short chain dehydrogenase
1875	 57.07	-1	2099156..2100124	+	322	94314422	-	Rmet_5503	-	hypothetical protein
1876	 56.32	-2	2100263..2101402	-	379	94314423	-	Rmet_5504	-	porin
1877	 57.03	-1	2102113..2102994	+	293	94314424	-	Rmet_5505	-	enoyl-CoA hydratase
1878	 56.40	-2	2103113..2103667	-	184	94314425	-	Rmet_5506	-	hypothetical protein
1879	 55.09	-2	2103729..2104886	-	385	94314426	-	Rmet_5507	-	acyl-CoA dehydrogenase-like protein
1880	 57.84	-1	2104904..2106931	-	675	94314427	-	Rmet_5508	-	AMP-dependent synthetase and ligase
1881	 58.68	-1	2107020..2107595	+	191	94314428	-	Rmet_5509	-	short-chain dehydrogenase/reductase SDR
1882	 59.39	-1	2107627..2108835	+	402	94314429	-	Rmet_5510	-	thiolase
1883	 57.76	-1	2108844..2110988	+	714	94314430	-	Rmet_5511	-	short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase
1884	 58.54	-1	2111002..2111862	+	286	94314431	-	Rmet_5512	-	enoyl-CoA hydratase/isomerase
1885	 57.69	-1	2111901..2112947	+	348	94314432	-	Rmet_5513	-	AraC family transcriptional regulator
1886	 58.99	-1	2112944..2113738	-	264	94314433	-	Rmet_5514	-	short-chain dehydrogenase/reductase SDR
1887	 57.64	-1	2113775..2115214	-	479	94314434	-	Rmet_5515	-	aldehyde dehydrogenase
1888	 55.12	-2	2115211..2116500	-	429	94314435	-	Rmet_5516	-	cytochrome P450
1889	 57.03	-1	2116530..2117525	-	331	94314436	-	Rmet_5517	-	ferredoxin
1890	 64.63	0	2117960..2118892	-	310	94314437	-	Rmet_5518	-	electron transfer flavoprotein, alpha subunit
1891	 63.33	0	2118911..2119660	-	249	94314438	-	Rmet_5519	-	electron transfer flavoprotein beta-subunit
1892	 57.19	-1	2119733..2120608	-	291	94314439	-	Rmet_5520	-	MaoC-like dehydratase
1893	 58.39	-1	2120601..2121422	-	273	94314440	-	Rmet_5521	-	enoyl-CoA hydratase/isomerase
1894	 55.11	-2	2121419..2122456	-	345	94314441	-	Rmet_5522	-	hypothetical protein
1895	 58.31	-1	2122497..2123561	-	354	94314442	-	Rmet_5523	-	aminoglycoside phosphotransferase
1896	 59.43	-1	2123564..2124337	-	257	94314443	-	Rmet_5524	-	short-chain dehydrogenase/reductase SDR
1897	 58.75	-1	2124495..2125631	+	378	94314444	-	Rmet_5525	-	L-carnitine dehydratase/bile acid-inducible protein F
1898	 57.65	-1	2125688..2126053	-	121	94314445	-	Rmet_5526	-	hypothetical protein
1899	 58.23	-1	2126070..2127005	-	311	94314446	-	Rmet_5527	-	aminoglycoside phosphotransferase
1900	 57.12	-1	2127077..2128606	-	509	94314447	-	Rmet_5528	-	acyl-CoA synthetase
1901	 59.56	-1	2128642..2129781	-	379	94314448	-	Rmet_5529	-	acyl-CoA dehydrogenase-like protein
1902	 57.71	-1	2129791..2130951	-	386	94314449	-	Rmet_5530	-	acyl-CoA dehydrogenase-like protein
1903	 57.24	-1	2131041..2131952	+	303	94314450	-	Rmet_5531	-	GntR family transcriptional regulator
1904	 57.34	-1	2131973..2132776	+	267	94314451	-	Rmet_5532	-	GntR family transcriptional regulator
1905	 59.88	-1	2132777..2133469	-	230	94314452	-	Rmet_5533	-	nitroreductase
1906	 57.92	-1	2133521..2134492	-	323	94314453	-	Rmet_5534	-	2-nitropropane dioxygenase, NPD
1907	 57.31	-1	2134587..2135708	-	373	94314454	-	Rmet_5535	-	L-carnitine dehydratase/bile acid-inducible protein F
1908	 56.65	-2	2135915..2136493	+	192	94314455	-	Rmet_5536	-	hypothetical protein
1909	 55.70	-2	2136499..2136972	+	157	94314456	-	Rmet_5537	-	MaoC-like dehydratase
1910	 58.10	-1	2137149..2138303	-	384	94314457	-	Rmet_5538	-	acyl-CoA dehydrogenase-like protein
1911	 59.15	-1	2138402..2138827	-	141	94314458	-	Rmet_5539	-	hypothetical protein
1912	 57.90	-1	2138824..2139918	-	364	94314459	-	Rmet_5540	-	thiolase family protein
1913	 63.64	0	2140031..2140888	-	285	94314460	-	Rmet_5541	-	integrase catalytic subunit
1914	 65.19	0	2140942..2141280	-	112	94314461	-	Rmet_5542	-	transposase IS3/IS911
1915	 58.85	-1	2141365..2142630	-	421	94314462	-	Rmet_5543	-	L-carnitine dehydratase/bile acid-inducible protein F
1916	 56.33	-2	2143067..2144527	-	486	94314463	-	Rmet_5544	-	aldehyde dehydrogenase
1917	 58.26	-1	2144544..2145602	-	352	94314464	-	Rmet_5545	-	alcohol dehydrogenase GroES-like protein
1918	 56.03	-2	2145616..2146659	-	347	94314465	-	Rmet_5546	-	Rieske (2Fe-2S) region
1919	 56.08	-2	2146780..2147610	-	276	94314466	-	Rmet_5547	-	LuxR family transcriptional regulator
1920	 59.92	-1	2148097..2149416	+	439	94314467	-	Rmet_5548	-	Rieske (2Fe-2S) region
1921	 58.90	-1	2149432..2150397	+	321	94314468	-	Rmet_5549	-	ferredoxin
1922	 60.86	0	2150439..2151161	+	240	94314469	-	Rmet_5550	-	GntR family transcriptional regulator
63.77	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.