IslandPathversion 1.0

IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.77 STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1776	 57.49	-1	1987659..1988192	+	177	94314323	-	Rmet_5404	-	hypothetical protein
1777	 60.89	0	1988353..1989321	+	322	94314324	-	Rmet_5405	-	putative periplasmic protein
1778	 64.02	0	1989333..1989860	+	175	94314325	-	Rmet_5406	-	hypothetical protein
1779	 65.45	0	1990448..2001592	+	3714	94314326	-	Rmet_5407	-	hypothetical protein
1780	 64.43	0	2001579..2003099	+	506	94314327	-	Rmet_5408	-	outer membrane efflux protein
1781	 67.03	0	2003096..2003917	+	273	94314328	-	Rmet_5409	-	hypothetical protein
1782	 66.96	0	2003923..2005272	+	449	94314329	-	Rmet_5410	-	hypothetical protein
1783	 67.48	+1	2005274..2007373	+	699	94314330	-	Rmet_5411	-	peptidase M50
1784	 63.22	0	2007436..2008074	-	212	94314331	-	Rmet_5412	-	TetR family transcriptional regulator
1785	 67.09	0	2008279..2009712	+	477	94314332	-	Rmet_5413	-	aldehyde dehydrogenase
1786	 67.41	+1	2009738..2011342	+	534	94314333	-	Rmet_5414	-	glucose-methanol-choline oxidoreductase
1787	 64.61	0	2011416..2013404	+	662	94314334	-	Rmet_5415	-	beta-lactamase-like protein
1788	 62.07	0	2013852..2015591	+	579	94314335	-	Rmet_5416	-	sulfatase
1789	 65.79	0	2015747..2016655	+	302	94314336	-	Rmet_5417	-	LysR family transcriptional regulator
1790	 67.13	0	2016809..2018113	+	434	94314337	-	Rmet_5418	-	major facilitator transporter
1791	 67.09	0	2018166..2019347	+	393	94314338	-	Rmet_5419	-	peptidase M20D, amidohydrolase
1792	 66.32	0	2019337..2020209	-	290	94314339	-	Rmet_5420	-	hypothetical protein
1793	 67.89	+1	2020206..2021021	-	271	94314340	-	Rmet_5421	-	NLPA lipoprotein
1794	 67.71	+1	2021014..2022072	-	352	94314341	-	Rmet_5422	-	hypothetical protein
1795	 65.00	0	2022092..2024074	-	660	94314342	-	Rmet_5423	-	sulfatase
1796	 61.42	0	2024447..2025361	+	304	94314343	-	Rmet_5424	-	LysR family transcriptional regulator
1797	 64.33	0	2025710..2026864	+	384	94314344	-	Rmet_5425	-	acyl-CoA dehydrogenase-like protein
1798	 63.49	0	2027372..2027623	+	83	94314345	-	Rmet_5426	-	hypothetical protein
1799	 62.75	0	2027727..2027981	+	84	94314346	-	Rmet_5427	-	hypothetical protein
1800	 65.60	0	2028051..2028425	-	124	94314347	-	Rmet_5428	-	hypothetical protein
1801	 62.50	0	2028527..2028814	-	95	94314348	-	Rmet_5429	-	hypothetical protein
1802	 65.05	0	2029109..2030038	+	309	94314349	-	Rmet_5430	-	lipid A biosynthesis lauroyl acyltransferase
1803	 64.53	0	2030108..2030950	-	280	94314350	-	Rmet_5431	-	enoyl-CoA hydratase
1804	 67.68	+1	2031089..2032267	-	392	94314351	-	Rmet_5432	-	acetyl-CoA acetyltransferase
1805	 65.01	0	2032344..2033126	-	260	94314352	-	Rmet_5433	-	short-chain dehydrogenase/reductase SDR
1806	 65.12	0	2033209..2034180	-	323	94314353	-	Rmet_5434	-	2-nitropropane dioxygenase, NPD
1807	 68.28	+1	2034258..2035370	-	370	94314354	-	Rmet_5435	-	L-carnitine dehydratase/bile acid-inducible protein F
1808	 67.48	+1	2035517..2038231	-	904	94314355	-	Rmet_5436	-	ATP-dependent transcription regulator LuxR
1809	 65.21	0	2038326..2039489	-	387	94314356	-	Rmet_5437	-	acyl-CoA dehydrogenase-like protein
1810	 65.05	0	2039687..2041234	+	515	94314357	-	Rmet_5438	-	AMP-dependent synthetase and ligase
1811	 63.13	0	2041283..2042920	-	545	94314358	-	Rmet_5439	-	AMP-dependent synthetase and ligase
1812	 63.57	0	2043091..2043606	-	171	94314359	-	Rmet_5440	-	hypothetical protein
1813	 62.03	0	2043859..2044203	-	114	94314360	-	Rmet_5441	-	antibiotic biosynthesis monooxygenase
1814	 62.27	0	2044172..2044762	-	196	94314361	-	Rmet_5442	-	glycerol-3-phosphate responsive antiterminator (mRNA-binding)-like protein
1815	 64.99	0	2044766..2046319	-	517	94314362	-	Rmet_5443	-	FAD linked oxidase-like protein
1816	 64.35	0	2046316..2047995	-	559	94314363	-	Rmet_5444	-	FAD dependent oxidoreductase
1817	 66.60	0	2048018..2049538	-	506	94314364	-	Rmet_5445	-	carbohydrate kinase, FGGY
1818	 62.47	0	2049543..2050997	-	484	94314365	-	Rmet_5446	-	major facilitator transporter
1819	 61.03	0	2051061..2051450	-	129	94314366	-	Rmet_5447	-	hypothetical protein
1820	 63.57	0	2051457..2051747	-	96	94314367	-	Rmet_5448	-	hypothetical protein
1821	 61.32	0	2052122..2052589	+	155	94314368	-	Rmet_5449	-	hypothetical protein
1822	 56.36	-2	2052839..2053129	+	96	94314369	-	Rmet_5450	-	hypothetical protein
1823	 60.65	0	2053126..2053773	+	215	94314370	-	Rmet_5451	-	hypothetical protein
1824	 61.74	0	2053811..2054704	-	297	94314371	-	Rmet_5452	-	integrase catalytic subunit
1825	 59.93	-1	2054701..2054997	-	98	94314372	-	Rmet_5453	-	transposase IS3/IS911
1826	 53.68	-2	2055056..2055571	-	171	94314373	-	Rmet_5454	-	transposon Tn7 transposition protein TnsC
1827	 58.22	-1	2055568..2056419	-	283	94314374	-	Rmet_5455	-	integrase catalytic subunit
1828	 57.51	-1	2056437..2056709	-	90	94314375	-	Rmet_5456	-	transposase IS3/IS911
1829	 53.86	-2	2056734..2057537	-	267	94314376	-	Rmet_5457	-	Tn7-like transposition protein C
1830	 57.16	-1	2057521..2059698	-	725	94314377	-	Rmet_5458	-	hypothetical protein
1831	 58.07	-1	2059698..2060651	-	317	94314378	-	Rmet_5459	-	hypothetical protein
1832	 60.03	-1	2061000..2061737	-	245	94314379	-	Rmet_5460	-	hypothetical protein
1833	 52.32	-2	2061759..2062253	+	164	94314380	-	Rmet_5461	-	hypothetical protein
1834	 58.40	-1	2062489..2062839	-	116	94314381	-	Rmet_5462	-	hypothetical protein
1835	 58.11	-1	2063138..2063359	-	73	94314382	-	Rmet_5463	-	hypothetical protein
1836	 59.29	-1	2063375..2063686	+	103	94314383	-	Rmet_5464	-	hypothetical protein
1837	 55.28	-2	2063836..2064327	-	163	94314384	-	Rmet_5465	-	hypothetical protein
1838	 53.77	-2	2064467..2064784	-	105	94314385	-	Rmet_5466	-	hypothetical protein
1839	 54.78	-2	2064878..2066038	-	386	94314386	-	Rmet_5467	-	hypothetical protein
1840	 52.80	-2	2066023..2066469	-	148	94314387	-	Rmet_5468	-	hypothetical protein
1841	 57.25	-1	2066578..2067267	-	229	94314388	-	Rmet_5469	-	hypothetical protein
1842	 58.44	-1	2068357..2069085	-	242	94314389	-	Rmet_5470	-	GntR family transcriptional regulator
1843	 58.69	-1	2069198..2069761	-	187	94314390	-	Rmet_5471	-	tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit
1844	 57.53	-1	2069775..2070617	-	280	94314391	-	Rmet_5472	-	fumarate hydratase
1845	 60.51	0	2070623..2071792	-	389	94314392	-	Rmet_5473	-	mandelate racemase/muconate lactonizing enzyme
1846	 59.35	-1	2071803..2072786	-	327	94314393	-	Rmet_5474	-	hypothetical protein
1847	 58.02	-1	2073381..2073704	+	107	94314394	-	Rmet_5475	-	hypothetical protein
1848	 56.10	-2	2073846..2074091	+	81	94314395	-	Rmet_5476	-	hypothetical protein
1849	 65.26	0	2074275..2074772	+	165	94314396	-	Rmet_5477	-	hypothetical protein
1850	 61.11	0	2074914..2075129	-	71	94314397	-	Rmet_5478	-	hypothetical protein
1851	 65.59	0	2075183..2076016	-	277	94314398	-	Rmet_5479	-	ATPase
1852	 65.56	0	2076013..2077452	-	479	94314399	-	Rmet_5480	-	integrase catalytic subunit
1853	 64.39	0	2077564..2078133	-	189	94314400	-	Rmet_5481	-	hypothetical protein
1854	 64.07	0	2078196..2078618	+	140	94314401	-	Rmet_5482	-	hypothetical protein
1855	 57.52	-1	2078870..2079667	+	265	94314402	-	Rmet_5483	-	DNA adenine methylase Dam
1856	 57.35	-1	2079754..2080161	+	135	94314403	-	Rmet_5484	-	hypothetical protein
1857	 53.20	-2	2080222..2080518	-	98	94314404	-	Rmet_5485	-	hypothetical protein
1858	 58.61	-1	2080801..2081706	-	301	94314405	-	Rmet_5486	-	hypothetical protein
1859	 57.66	-1	2081873..2083648	-	591	94314406	-	Rmet_5487	-	superfamily I DNA/RNA helicase-like protein
1860	 54.26	-2	2083641..2085437	-	598	94314407	-	Rmet_5488	-	putative exonuclease
1861	 61.54	0	2086242..2086475	+	77	94314408	-	Rmet_5489	-	hypothetical protein
1862	 56.91	-1	2087533..2088711	-	392	94314409	-	Rmet_5490	-	4-hydroxybenzoate 3-monooxygenase
1863	 60.25	-1	2089080..2090045	+	321	94314410	-	Rmet_5491	-	hypothetical protein
1864	 57.51	-1	2090060..2091763	+	567	94314411	-	Rmet_5492	-	putative succinate dehydrogenase
1865	 58.05	-1	2091760..2092107	+	115	94314412	-	Rmet_5493	-	NIPSNAP domain-containing protein
1866	 57.17	-1	2092203..2093192	+	329	94314413	-	Rmet_5494	-	hypothetical protein
1867	 58.27	-1	2093344..2094141	-	265	94314414	-	Rmet_5495	-	zinc-binding alcohol dehydrogenase
1868	 57.51	-1	2094179..2094451	+	90	94314415	-	Rmet_5496	-	transposase IS3/IS911
1869	 58.22	-1	2094469..2095320	+	283	94314416	-	Rmet_5497	-	integrase catalytic subunit
1870	 57.32	-1	2095325..2095570	-	81	94314417	-	Rmet_5498	-	oxidoreductase, zinc-binding
1871	 60.54	0	2095745..2096920	+	391	94314418	-	Rmet_5499	-	acetyl-CoA acetyltransferase
1872	 55.39	-2	2096924..2097322	+	132	94314419	-	Rmet_5500	-	hypothetical protein
1873	 57.86	-1	2097334..2098128	+	264	94314420	-	Rmet_5501	-	enoyl-CoA hydratase
1874	 57.11	-1	2098131..2098946	+	271	94314421	-	Rmet_5502	-	short chain dehydrogenase
1875	 57.07	-1	2099156..2100124	+	322	94314422	-	Rmet_5503	-	hypothetical protein
63.77	MEAN

3.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.