IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.77   STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
125	 64.57	0	134983..135696	+	237	94312672	flgH	Rmet_3740	-	flagellar basal body L-ring protein
126	 66.58	0	135704..136888	+	394	94312673	flgI	Rmet_3741	-	flagellar basal body P-ring protein
127	 65.88	0	136888..137910	+	340	94312674	flgJ	Rmet_3742	-	peptidoglycan hydrolase
128	 64.19	0	138176..140071	+	631	94312675	flgK	Rmet_3743	-	flagellar hook-associated protein FlgK
129	 64.33	0	140127..141365	+	412	94312676	flgL	Rmet_3744	-	flagellar hook-associated protein FlgL
130	 56.74	-1	141728..142906	-	392	94312677	-	Rmet_3745	-	diguanylate cyclase
131	 57.85	-1	143187..143549	-	120	94312678	-	Rmet_3746	-	hypothetical protein
132	 59.07	-1	143806..144885	-	359	94312679	-	Rmet_3747	-	hypothetical protein
133	 58.33	-1	145207..145566	+	119	94312680	-	Rmet_3748	-	hypothetical protein
134	 57.45	-1	145586..146692	+	368	94312681	-	Rmet_3749	-	hypothetical protein
135	 54.61	-2	146751..148376	+	541	94312682	-	Rmet_3750	-	hypothetical protein
136	 56.03	-2	148373..148654	+	93	94312683	-	Rmet_3751	-	hypothetical protein
137	 57.76	-1	149244..149546	+	100	94312684	-	Rmet_3752	-	hypothetical protein
138	 59.12	-1	149882..150199	+	105	94312685	-	Rmet_3754	-	hypothetical protein
139	 56.75	-1	150269..150520	+	83	94312686	-	Rmet_3755	-	hypothetical protein
140	 58.97	-1	150604..151227	-	207	94312687	-	Rmet_3756	-	endoribonuclease L-PSP
141	 62.18	0	151582..151737	-	51	94312688	-	Rmet_3757	-	acyl-CoA dehydrogenase-like protein
142	 60.92	0	151827..152174	+	115	94312689	-	Rmet_3758	-	hypothetical protein
143	 54.36	-2	152188..152577	+	129	94312690	-	Rmet_3759	-	hypothetical protein
144	 65.17	0	152666..153664	+	332	94312691	-	Rmet_3760	-	glutaminase
145	 57.55	-1	154115..154498	-	127	94312692	-	Rmet_3762	-	hypothetical protein
146	 61.36	0	155099..155437	-	112	94312693	-	Rmet_3763	-	hypothetical protein
147	 62.70	0	155427..156131	-	234	94312694	-	Rmet_3764	-	hypothetical protein
148	 64.41	0	156146..157210	-	354	94312695	-	Rmet_3765	-	AraC family transcriptional regulator
149	 64.69	0	157294..157950	-	218	94312696	-	Rmet_3766	-	HhH-GPD
150	 66.49	0	157953..158504	-	183	94312697	-	Rmet_3767	-	methylated-DNA--protein-cysteine methyltransferase
151	 58.85	-1	158553..158744	-	63	94312698	-	Rmet_3768	-	hypothetical protein
152	 62.74	0	158829..159413	-	194	94312699	-	Rmet_3769	-	DNA-N1-methyladenine dioxygenase
153	 60.00	-1	159585..159884	+	99	94312700	-	Rmet_3770	-	transposase IS3/IS911
154	 61.74	0	159881..160774	+	297	94312701	-	Rmet_3771	-	integrase catalytic subunit
155	 54.61	-2	160848..161129	+	93	94312702	-	Rmet_3772	-	hypothetical protein
156	 56.12	-2	161126..162433	+	435	94312703	-	Rmet_3773	-	hypothetical protein
157	 55.01	-2	162430..164145	+	571	94312704	-	Rmet_3774	-	hypothetical protein
158	 59.42	-1	164427..164702	-	91	94312705	-	Rmet_3775	-	hypothetical protein
159	 62.37	0	164820..166007	+	395	94312706	-	Rmet_3776	-	hypothetical protein
160	 60.97	0	166051..167754	+	567	94312707	-	Rmet_3777	-	AMP-dependent synthetase and ligase
161	 61.55	0	167768..168646	+	292	94312708	-	Rmet_3778	-	glyoxalase/bleomycin resistance protein/dioxygenase
162	 61.07	0	168643..169803	+	386	94312709	-	Rmet_3779	-	monooxygenase, FAD-binding
163	 65.56	0	169800..170249	+	149	94312710	-	Rmet_3780	-	thioesterase-like protein
164	 64.03	0	170270..171028	+	252	94312711	-	Rmet_3781	-	Asp/Glu racemase
165	 64.50	0	171094..172341	+	415	94312712	-	Rmet_3782	-	major facilitator transporter
166	 60.98	0	172355..173233	+	292	94312713	-	Rmet_3783	-	TetR family transcriptional regulator
167	 62.49	0	173389..174345	+	318	94312714	-	Rmet_3784	-	hypothetical protein
168	 64.21	0	174381..175562	+	393	94312715	-	Rmet_3785	-	beta-lactamase-like protein
169	 58.59	-1	175703..176878	+	391	94312716	-	Rmet_3786	-	porin
170	 62.73	0	177251..177682	+	143	94312717	-	Rmet_3787	-	hypothetical protein
171	 62.15	0	178023..179594	+	523	94312718	-	Rmet_3788	-	acyl-CoA synthetase
172	 62.69	0	179660..180640	+	326	94312719	-	Rmet_3789	-	hypothetical protein
173	 64.10	0	180804..182594	-	596	94312720	-	Rmet_3790	-	acyl-CoA dehydrogenase-like protein
174	 62.50	0	182655..183878	-	407	94312721	-	Rmet_3791	-	L-carnitine dehydratase/bile acid-inducible protein F
175	 63.71	0	183894..184874	-	326	94312722	-	Rmet_3792	-	hypothetical protein
176	 59.67	-1	185022..185936	+	304	94312723	-	Rmet_3793	-	LysR family transcriptional regulator
177	 62.69	0	185948..186550	-	200	94312724	-	Rmet_3794	-	TetR family transcriptional regulator
178	 66.38	0	186741..187796	-	351	94312725	-	Rmet_3795	-	lipase chaperone
179	 65.43	0	187783..188916	-	377	94312726	-	Rmet_3796	-	alpha/beta hydrolase fold
180	 62.51	0	189231..190193	+	320	94312727	-	Rmet_3797	-	hypothetical protein
181	 65.23	0	190398..191930	+	510	94312728	-	Rmet_3798	-	AMP-dependent synthetase and ligase
182	 63.46	0	191965..192867	-	300	94312729	-	Rmet_3799	-	LysR family transcriptional regulator
183	 65.05	0	192976..193839	+	287	94312730	-	Rmet_3800	-	enoyl-CoA hydratase / short chain enoyl-CoA hydratase
184	 65.06	0	193903..194895	-	330	94312731	-	Rmet_3801	-	hypothetical protein
185	 67.28	0	194906..196543	-	545	94312732	-	Rmet_3802	-	AMP-dependent synthetase and ligase
186	 63.32	0	196633..197826	+	397	94312733	-	Rmet_3803	-	acyl-CoA dehydrogenase-like protein
187	 67.75	+1	197844..198953	+	369	94312734	-	Rmet_3804	-	acyl-CoA dehydrogenase-like protein
188	 65.04	0	198980..200146	+	388	94312735	-	Rmet_3805	-	acetyl-CoA acetyltransferase
189	 64.66	0	200161..200559	+	132	94312736	-	Rmet_3806	-	hypothetical protein
190	 66.22	0	200573..201466	+	297	94312737	-	Rmet_3807	-	MaoC-like dehydratase
191	 65.51	0	201484..202776	+	430	94312738	-	Rmet_3808	-	L-carnitine dehydratase/bile acid-inducible protein F
192	 65.32	0	202832..204022	-	396	94312739	-	Rmet_3809	-	L-carnitine dehydratase/bile acid-inducible protein F
193	 63.36	0	204129..205247	-	372	94312740	-	Rmet_3810	-	LysR family transcriptional regulator
194	 67.58	+1	205246..206229	+	327	94312741	-	Rmet_3811	-	hypothetical protein
195	 61.36	0	206261..206731	+	156	94312742	-	Rmet_3812	-	MaoC-like dehydratase
196	 65.24	0	206721..207698	+	325	94312743	-	Rmet_3813	-	hypothetical protein
197	 64.38	0	208109..208720	-	203	94312744	-	Rmet_3814	-	hypothetical protein
198	 65.19	0	208717..210339	-	540	94312745	-	Rmet_3815	-	peptidoglycan binding domain-containing protein
199	 67.10	0	210454..211149	-	231	94312746	-	Rmet_3816	-	TetR family transcriptional regulator
200	 65.45	0	211247..212893	+	548	94312747	-	Rmet_3817	-	acyl-CoA dehydrogenase-like protein
201	 65.87	0	213032..214537	+	501	94312748	-	Rmet_3818	-	AMP-dependent synthetase and ligase
202	 64.51	0	214661..215635	+	324	94312749	-	Rmet_3819	-	cysteine synthase A
203	 67.45	+1	215755..216906	+	383	94312750	-	Rmet_3820	-	putative cytochrome p450 oxidoreductase
204	 65.83	0	216922..217278	+	118	94312751	-	Rmet_3821	-	antibiotic biosynthesis monooxygenase
205	 67.20	0	217297..218052	+	251	94312752	-	Rmet_3822	-	hypothetical protein
206	 71.02	+2	218156..219280	+	374	94312753	-	Rmet_3823	-	esterase, PHB depolymerase
207	 64.40	0	219350..219658	-	102	94312754	-	Rmet_3824	-	ferredoxin
208	 66.67	0	219655..220392	-	245	94312755	-	Rmet_3825	-	hypothetical protein
209	 65.51	0	220465..222453	+	662	94312756	-	Rmet_3826	-	hypothetical protein
210	 67.80	+1	222534..223148	+	204	94312757	-	Rmet_3827	-	hypothetical protein
211	 63.41	0	223145..223819	+	224	94312758	-	Rmet_3828	-	HD superfamily hydrolase
212	 62.72	0	223991..224548	+	185	94312759	-	Rmet_3829	-	hypothetical protein
213	 59.07	-1	224545..225255	+	236	94312760	-	Rmet_3830	-	hypothetical protein
214	 66.07	0	225379..226212	-	277	94312761	-	Rmet_3831	-	hypothetical protein
215	 66.05	0	226293..227261	-	322	94312762	-	Rmet_3832	-	hypothetical protein
216	 67.84	+1	227446..228384	-	312	94312763	-	Rmet_3833	-	LysR family transcriptional regulator
217	 66.92	0	228527..229699	+	390	94312764	-	Rmet_3834	-	L-carnitine dehydratase/bile acid-inducible protein F
218	 68.59	+1	229712..230542	+	276	94312765	-	Rmet_3835	-	HpcH/HpaI aldolase
219	 69.28	+1	230873..232210	+	445	94312766	-	Rmet_3836	-	outer membrane efflux protein
220	 67.32	+1	232194..233411	+	405	94312767	-	Rmet_3837	-	secretion protein HlyD
221	 62.14	0	236768..237784	+	338	94312768	-	Rmet_3840	-	diguanylate cyclase
222	 62.87	0	238081..239895	+	604	94312769	-	Rmet_3841	-	tannase and feruloyl esterase
223	 64.97	0	239916..240446	-	176	94312770	-	Rmet_3842	-	hypothetical protein
224	 62.90	0	240562..241065	+	167	94312771	-	Rmet_3843	-	alkylhydroperoxidase AhpD core
63.77	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.