IslandPathversion 1.0

IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.77 STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1586	 64.56	0	1760631..1761104	+	157	94314133	-	Rmet_5214	-	glyoxalase/bleomycin resistance protein/dioxygenase
1587	 61.63	0	1761739..1762929	-	396	94314134	-	Rmet_5215	-	hypothetical protein
1588	 62.33	0	1762904..1764172	-	422	94314135	-	Rmet_5216	-	hypothetical protein
1589	 60.20	-1	1764169..1765482	-	437	94314136	-	Rmet_5217	-	hypothetical protein
1590	 61.04	0	1765627..1765875	+	82	94314137	-	Rmet_5218	-	hypothetical protein
1591	 56.97	-1	1766037..1766603	+	188	94314138	-	Rmet_5219	-	hypothetical protein
1592	 62.03	0	1767028..1767954	-	308	94314139	-	Rmet_5220	-	LysR family transcriptional regulator
1593	 60.63	0	1767996..1769039	+	347	94314140	-	Rmet_5221	-	twin-arginine translocation pathway signal
1594	 63.66	0	1769036..1770232	+	398	94314141	-	Rmet_5222	-	peptidase M20D, amidohydrolase
1595	 59.62	-1	1770674..1771141	+	155	94314142	-	Rmet_5223	-	hypothetical protein
1596	 61.61	0	1771556..1772524	-	322	94314143	-	Rmet_5224	-	hypothetical protein
1597	 59.98	-1	1772706..1773752	-	348	94314144	-	Rmet_5225	-	hypothetical protein
1598	 59.39	-1	1773817..1775259	-	480	94314145	-	Rmet_5226	-	hypothetical protein
1599	 63.19	0	1775343..1776290	-	315	94314146	-	Rmet_5227	-	alpha/beta hydrolase fold
1600	 62.35	0	1776322..1777851	-	509	94314147	-	Rmet_5228	-	FAD dependent oxidoreductase
1601	 63.04	0	1777951..1778970	+	339	94314148	-	Rmet_5229	-	AraC family transcriptional regulator
1602	 61.42	0	1779508..1781013	-	501	94314149	-	Rmet_5230	-	aminotransferase, class V
1603	 62.79	0	1781442..1782086	+	214	94314150	-	Rmet_5231	-	ArsR family transcriptional regulator
1604	 62.56	0	1782090..1783451	+	453	94314151	-	Rmet_5232	-	cytochrome bd ubiquinol oxidase, subunit I
1605	 64.74	0	1783448..1784485	+	345	94314152	-	Rmet_5233	-	cytochrome d ubiquinol oxidase, subunit II
1606	 70.42	+1	1784535..1785467	+	310	94314153	-	Rmet_5234	-	hypothetical protein
1607	 62.66	0	1785608..1788001	+	797	94314154	-	Rmet_5235	-	tetratricopeptide TPR_2
1608	 60.56	0	1788014..1789159	+	381	94314155	-	Rmet_5236	-	DegT/DnrJ/EryC1/StrS aminotransferase
1609	 61.82	0	1789162..1789863	+	233	94314156	-	Rmet_5237	-	WbnG
1610	 63.18	0	1789860..1790834	+	324	94314157	-	Rmet_5238	-	hypothetical protein
1611	 59.87	-1	1790860..1791639	+	259	94314158	-	Rmet_5239	-	phytanoyl-CoA dioxygenase
1612	 60.70	0	1791644..1792381	+	245	94314159	-	Rmet_5240	-	methyltransferase type 12
1613	 61.55	0	1792393..1793682	+	429	94314160	-	Rmet_5241	-	hypothetical protein
1614	 60.39	0	1793692..1794456	+	254	94314161	-	Rmet_5242	-	hypothetical protein
1615	 62.79	0	1794503..1795198	+	231	94314162	-	Rmet_5243	-	methyltransferase type 11
1616	 67.64	+1	1795227..1796768	-	513	94314163	-	Rmet_5244	-	major facilitator transporter
1617	 70.18	+1	1796933..1797844	-	303	94314164	-	Rmet_5245	-	LysR family transcriptional regulator
1618	 69.73	+1	1797954..1798508	+	184	94314165	-	Rmet_5246	-	hypothetical protein
1619	 66.15	0	1798465..1799436	-	323	94314166	-	Rmet_5247	-	LysR family transcriptional regulator
1620	 63.97	0	1799548..1800549	+	333	94314167	-	Rmet_5248	-	hypothetical protein
1621	 65.59	0	1800558..1801670	+	370	94314168	-	Rmet_5249	-	L-carnitine dehydratase/bile acid-inducible protein F
1622	 67.31	+1	1801738..1803771	-	677	94314169	-	Rmet_5250	-	methyl-accepting chemotaxis sensory transducer
1623	 62.93	0	1804683..1805003	+	106	94314170	-	Rmet_5251	-	host factor-I protein
1624	 62.07	0	1805226..1806422	+	398	94314171	-	Rmet_5252	-	flagellin
1625	 65.09	0	1806538..1806918	+	126	94314172	-	Rmet_5253	-	flagellar protein FlaG protein
1626	 62.59	0	1806961..1808433	+	490	94314173	-	Rmet_5254	-	flagellar hook-associated 2-like protein
1627	 65.75	0	1808458..1808892	+	144	94314174	-	Rmet_5255	-	flagellar protein FliS
1628	 64.06	0	1808914..1809258	+	114	94314175	-	Rmet_5256	-	flagellar protein FliT
1629	 68.38	+1	1809358..1810701	+	447	94314176	-	Rmet_5257	-	hypothetical protein
1630	 63.41	0	1810698..1810973	+	91	94314177	-	Rmet_5258	-	putative flagellar protein
1631	 63.86	0	1811044..1811364	-	106	94314178	-	Rmet_5259	-	flagellar hook-basal body complex protein (FliE)
1632	 60.74	0	1811468..1811737	+	89	94314179	-	Rmet_5260	-	hypothetical protein
1633	 66.13	0	1811734..1813425	+	563	94314180	fliF	Rmet_5261	-	flagellar MS-ring protein
1634	 63.81	0	1813412..1814425	+	337	94314181	fliG	Rmet_5262	-	flagellar motor switch protein G
1635	 70.37	+1	1814412..1815248	+	278	94314182	fliH	Rmet_5263	-	flagellar assembly protein H
1636	 68.04	+1	1815241..1816701	+	486	94314183	-	Rmet_5264	-	ATPase FliI/YscN
1637	 66.67	0	1816694..1817146	+	150	94314184	-	Rmet_5265	-	flagellar export FliJ
1638	 70.09	+1	1817162..1818649	+	495	94314185	-	Rmet_5266	-	flagellar hook-length control protein
1639	 62.42	0	1818832..1819866	+	344	94314186	-	Rmet_5267	-	alpha/beta hydrolase fold
1640	 67.56	+1	1819924..1820595	+	223	94314187	-	Rmet_5268	-	DNA-N1-methyladenine dioxygenase
1641	 67.55	+1	1820629..1822221	+	530	94314188	-	Rmet_5269	-	sodium/sulphate symporter
1642	 65.03	0	1822273..1822578	-	101	94314189	-	Rmet_5270	-	XRE family transcriptional regulator
1643	 65.21	0	1822767..1824551	+	594	94314190	-	Rmet_5271	-	dihydroxy-acid dehydratase
1644	 65.83	0	1824559..1825278	+	239	94314191	-	Rmet_5272	-	hypothetical protein
1645	 65.12	0	1825358..1826326	+	322	94314192	-	Rmet_5273	-	hypothetical protein
1646	 67.94	+1	1826370..1827308	+	312	94314193	-	Rmet_5274	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1647	 69.18	+1	1827416..1828249	+	277	94314194	-	Rmet_5275	-	intradiol ring-cleavage dioxygenase
1648	 65.60	0	1828535..1830124	+	529	94314195	-	Rmet_5276	-	EAL-containing signal transduction protein
1649	 68.61	+1	1830199..1830816	+	205	94314196	-	Rmet_5277	-	lysine exporter protein LysE/YggA
1650	 67.27	0	1830871..1831866	-	331	94314197	-	Rmet_5278	-	hypothetical protein
1651	 69.26	+1	1831967..1832893	-	308	94314198	-	Rmet_5279	-	LysR family transcriptional regulator
1652	 61.79	0	1832956..1833591	+	211	94314199	-	Rmet_5280	-	hypothetical protein
1653	 65.20	0	1833756..1834097	+	113	94314200	-	Rmet_5281	-	putative signal peptide protein
1654	 60.50	0	1834261..1835265	-	334	94314201	-	Rmet_5282	-	dienelactone hydrolase
1655	 61.94	0	1835532..1836884	+	450	94314202	-	Rmet_5283	-	beta-lactamase
1656	 65.03	0	1837047..1838450	-	467	94314203	-	Rmet_5284	-	ATP-dependent RNA helicase DbpA
1657	 63.40	0	1838782..1839762	+	326	94314204	-	Rmet_5285	-	zinc-binding alcohol dehydrogenase
1658	 60.39	0	1839833..1840900	+	355	94314205	-	Rmet_5286	-	hypothetical protein
1659	 62.94	0	1841018..1842010	+	330	94314206	-	Rmet_5287	-	hypothetical protein
1660	 61.76	0	1842320..1843480	+	386	94314207	-	Rmet_5288	-	porin
1661	 63.64	0	1843575..1844333	+	252	94314208	-	Rmet_5289	-	short-chain dehydrogenase/reductase SDR
1662	 62.91	0	1844413..1845237	-	274	94314209	-	Rmet_5290	-	short-chain dehydrogenase/reductase SDR
1663	 62.71	0	1845221..1846156	-	311	94314210	-	Rmet_5291	-	hypothetical protein
1664	 63.71	0	1846357..1847202	+	281	94314211	-	Rmet_5292	-	taurine catabolism dioxygenase TauD/TfdA
1665	 62.63	0	1847230..1847799	+	189	94314212	-	Rmet_5293	-	hypothetical protein
1666	 63.95	0	1847854..1848846	-	330	94314213	-	Rmet_5294	-	hypothetical protein
1667	 64.46	0	1849133..1850176	+	347	94314214	-	Rmet_5295	-	AraC family transcriptional regulator
1668	 63.58	0	1850421..1853012	-	863	94314215	-	Rmet_5296	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
1669	 65.89	0	1853434..1853949	+	171	94314216	-	Rmet_5297	-	flagellar basal body-associated protein FliL
1670	 63.40	0	1854096..1855106	+	336	94314217	-	Rmet_5298	-	flagellar motor switch protein FliM
1671	 64.97	0	1855099..1855569	+	156	94314218	-	Rmet_5299	-	flagellar motor switch FliN
1672	 67.91	+1	1855566..1856126	+	186	94314219	-	Rmet_5300	-	flagellar biosynthesis protein, FliO
1673	 65.53	0	1856123..1856917	+	264	94314220	fliP	Rmet_5301	-	flagellar biosynthesis protein FliP
1674	 61.85	0	1856931..1857200	+	89	94314221	fliQ	Rmet_5302	-	flagellar biosynthesis protein FliQ
1675	 64.89	0	1857246..1858031	+	261	94314222	-	Rmet_5303	-	flagellar biosynthetic protein FliR
1676	 68.04	+1	1858267..1859796	+	509	94314223	-	Rmet_5304	-	metallophosphoesterase
1677	 67.74	+1	1859807..1861108	+	433	94314224	-	Rmet_5305	-	di-haem cytochrome c peroxidase
1678	 64.61	0	1861078..1862775	-	565	94314225	-	Rmet_5306	-	methyl-accepting chemotaxis sensory transducer
1679	 67.83	+1	1863022..1864227	+	401	94314226	-	Rmet_5307	-	NnrS
1680	 61.33	0	1864464..1864763	-	99	94314227	-	Rmet_5308	-	hypothetical protein
1681	 67.77	+1	1864924..1870158	-	1744	94314228	-	Rmet_5309	-	ATP-binding region, ATPase-like protein
1682	 65.36	0	1870208..1870894	-	228	94314229	-	Rmet_5310	-	two component LuxR family transcriptional regulator
1683	 63.03	0	1871209..1871895	+	228	94314230	-	Rmet_5311	-	isochorismatase hydrolase
1684	 65.33	0	1871953..1872774	+	273	94314231	-	Rmet_5312	-	alpha/beta hydrolase fold
1685	 65.22	0	1872861..1874726	+	621	94314232	-	Rmet_5313	-	amidohydrolase 3
63.77	MEAN

3.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.