IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.77   STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1563	 63.66	0	1738061..1739488	-	475	94314110	-	Rmet_5191	-	amino acid permease-associated region
1564	 64.23	0	1739523..1740752	-	409	94314111	-	Rmet_5192	-	kynureninase
1565	 64.76	0	1740823..1741347	-	174	94314112	-	Rmet_5193	-	3-hydroxyanthranilate 3,4-dioxygenase
1566	 64.41	0	1741516..1742580	-	354	94314113	-	Rmet_5194	-	LysR family transcriptional regulator
1567	 61.44	0	1742738..1743886	+	382	94314114	-	Rmet_5195	-	porin
1568	 65.43	0	1743864..1745801	+	645	94314115	-	Rmet_5196	-	hypothetical protein
1569	 64.03	0	1745804..1746220	+	138	94314116	-	Rmet_5197	-	cytochrome c, class I
1570	 69.50	+1	1746268..1747221	-	317	94314117	-	Rmet_5198	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1571	 64.64	0	1747418..1748356	+	312	94314118	-	Rmet_5199	-	fumarylacetoacetate (FAA) hydrolase
1572	 65.68	0	1748411..1749016	+	201	94314119	-	Rmet_5200	-	glyoxalase/bleomycin resistance protein/dioxygenase
1573	 68.38	+1	1749028..1749960	+	310	94314120	-	Rmet_5201	-	lipase, active site
1574	 65.56	0	1750028..1750930	+	300	94314121	-	Rmet_5202	-	dihydrodipicolinate synthetase
1575	 67.57	+1	1750927..1751370	+	147	94314122	-	Rmet_5203	-	endoribonuclease L-PSP
1576	 67.34	+1	1751367..1751960	+	197	94314123	-	Rmet_5204	-	hypothetical protein
1577	 66.47	0	1752039..1753031	+	330	94314124	-	Rmet_5205	-	hypothetical protein
1578	 66.12	0	1753142..1754605	+	487	94314125	-	Rmet_5206	-	aldehyde dehydrogenase
1579	 67.88	+1	1754625..1755446	+	273	94314126	-	Rmet_5207	-	hydratase/decarboxylase
1580	 66.24	0	1755448..1756392	+	314	94314127	-	Rmet_5208	-	acetaldehyde dehydrogenase
1581	 66.76	0	1756403..1757440	+	345	94314128	-	Rmet_5209	-	4-hydroxy-2-ketovalerate aldolase
1582	 66.93	0	1757437..1758201	+	254	94314129	-	Rmet_5210	-	hydratase/decarboxylase
1583	 63.01	0	1758253..1758690	+	145	94314130	-	Rmet_5211	-	endoribonuclease L-PSP
1584	 63.27	0	1758687..1759688	+	333	94314131	-	Rmet_5212	-	amidohydrolase 2
1585	 66.22	0	1759761..1760426	-	221	94314132	-	Rmet_5213	-	GntR family transcriptional regulator
1586	 64.56	0	1760631..1761104	+	157	94314133	-	Rmet_5214	-	glyoxalase/bleomycin resistance protein/dioxygenase
1587	 61.63	0	1761739..1762929	-	396	94314134	-	Rmet_5215	-	hypothetical protein
1588	 62.33	0	1762904..1764172	-	422	94314135	-	Rmet_5216	-	hypothetical protein
1589	 60.20	-1	1764169..1765482	-	437	94314136	-	Rmet_5217	-	hypothetical protein
1590	 61.04	0	1765627..1765875	+	82	94314137	-	Rmet_5218	-	hypothetical protein
1591	 56.97	-1	1766037..1766603	+	188	94314138	-	Rmet_5219	-	hypothetical protein
1592	 62.03	0	1767028..1767954	-	308	94314139	-	Rmet_5220	-	LysR family transcriptional regulator
1593	 60.63	0	1767996..1769039	+	347	94314140	-	Rmet_5221	-	twin-arginine translocation pathway signal
1594	 63.66	0	1769036..1770232	+	398	94314141	-	Rmet_5222	-	peptidase M20D, amidohydrolase
1595	 59.62	-1	1770674..1771141	+	155	94314142	-	Rmet_5223	-	hypothetical protein
1596	 61.61	0	1771556..1772524	-	322	94314143	-	Rmet_5224	-	hypothetical protein
1597	 59.98	-1	1772706..1773752	-	348	94314144	-	Rmet_5225	-	hypothetical protein
1598	 59.39	-1	1773817..1775259	-	480	94314145	-	Rmet_5226	-	hypothetical protein
1599	 63.19	0	1775343..1776290	-	315	94314146	-	Rmet_5227	-	alpha/beta hydrolase fold
1600	 62.35	0	1776322..1777851	-	509	94314147	-	Rmet_5228	-	FAD dependent oxidoreductase
1601	 63.04	0	1777951..1778970	+	339	94314148	-	Rmet_5229	-	AraC family transcriptional regulator
1602	 61.42	0	1779508..1781013	-	501	94314149	-	Rmet_5230	-	aminotransferase, class V
1603	 62.79	0	1781442..1782086	+	214	94314150	-	Rmet_5231	-	ArsR family transcriptional regulator
1604	 62.56	0	1782090..1783451	+	453	94314151	-	Rmet_5232	-	cytochrome bd ubiquinol oxidase, subunit I
1605	 64.74	0	1783448..1784485	+	345	94314152	-	Rmet_5233	-	cytochrome d ubiquinol oxidase, subunit II
1606	 70.42	+1	1784535..1785467	+	310	94314153	-	Rmet_5234	-	hypothetical protein
1607	 62.66	0	1785608..1788001	+	797	94314154	-	Rmet_5235	-	tetratricopeptide TPR_2
1608	 60.56	0	1788014..1789159	+	381	94314155	-	Rmet_5236	-	DegT/DnrJ/EryC1/StrS aminotransferase
1609	 61.82	0	1789162..1789863	+	233	94314156	-	Rmet_5237	-	WbnG
1610	 63.18	0	1789860..1790834	+	324	94314157	-	Rmet_5238	-	hypothetical protein
1611	 59.87	-1	1790860..1791639	+	259	94314158	-	Rmet_5239	-	phytanoyl-CoA dioxygenase
1612	 60.70	0	1791644..1792381	+	245	94314159	-	Rmet_5240	-	methyltransferase type 12
1613	 61.55	0	1792393..1793682	+	429	94314160	-	Rmet_5241	-	hypothetical protein
1614	 60.39	0	1793692..1794456	+	254	94314161	-	Rmet_5242	-	hypothetical protein
1615	 62.79	0	1794503..1795198	+	231	94314162	-	Rmet_5243	-	methyltransferase type 11
1616	 67.64	+1	1795227..1796768	-	513	94314163	-	Rmet_5244	-	major facilitator transporter
1617	 70.18	+1	1796933..1797844	-	303	94314164	-	Rmet_5245	-	LysR family transcriptional regulator
1618	 69.73	+1	1797954..1798508	+	184	94314165	-	Rmet_5246	-	hypothetical protein
1619	 66.15	0	1798465..1799436	-	323	94314166	-	Rmet_5247	-	LysR family transcriptional regulator
1620	 63.97	0	1799548..1800549	+	333	94314167	-	Rmet_5248	-	hypothetical protein
1621	 65.59	0	1800558..1801670	+	370	94314168	-	Rmet_5249	-	L-carnitine dehydratase/bile acid-inducible protein F
1622	 67.31	+1	1801738..1803771	-	677	94314169	-	Rmet_5250	-	methyl-accepting chemotaxis sensory transducer
1623	 62.93	0	1804683..1805003	+	106	94314170	-	Rmet_5251	-	host factor-I protein
1624	 62.07	0	1805226..1806422	+	398	94314171	-	Rmet_5252	-	flagellin
1625	 65.09	0	1806538..1806918	+	126	94314172	-	Rmet_5253	-	flagellar protein FlaG protein
1626	 62.59	0	1806961..1808433	+	490	94314173	-	Rmet_5254	-	flagellar hook-associated 2-like protein
1627	 65.75	0	1808458..1808892	+	144	94314174	-	Rmet_5255	-	flagellar protein FliS
1628	 64.06	0	1808914..1809258	+	114	94314175	-	Rmet_5256	-	flagellar protein FliT
1629	 68.38	+1	1809358..1810701	+	447	94314176	-	Rmet_5257	-	hypothetical protein
1630	 63.41	0	1810698..1810973	+	91	94314177	-	Rmet_5258	-	putative flagellar protein
1631	 63.86	0	1811044..1811364	-	106	94314178	-	Rmet_5259	-	flagellar hook-basal body complex protein (FliE)
1632	 60.74	0	1811468..1811737	+	89	94314179	-	Rmet_5260	-	hypothetical protein
1633	 66.13	0	1811734..1813425	+	563	94314180	fliF	Rmet_5261	-	flagellar MS-ring protein
1634	 63.81	0	1813412..1814425	+	337	94314181	fliG	Rmet_5262	-	flagellar motor switch protein G
1635	 70.37	+1	1814412..1815248	+	278	94314182	fliH	Rmet_5263	-	flagellar assembly protein H
1636	 68.04	+1	1815241..1816701	+	486	94314183	-	Rmet_5264	-	ATPase FliI/YscN
1637	 66.67	0	1816694..1817146	+	150	94314184	-	Rmet_5265	-	flagellar export FliJ
1638	 70.09	+1	1817162..1818649	+	495	94314185	-	Rmet_5266	-	flagellar hook-length control protein
1639	 62.42	0	1818832..1819866	+	344	94314186	-	Rmet_5267	-	alpha/beta hydrolase fold
1640	 67.56	+1	1819924..1820595	+	223	94314187	-	Rmet_5268	-	DNA-N1-methyladenine dioxygenase
1641	 67.55	+1	1820629..1822221	+	530	94314188	-	Rmet_5269	-	sodium/sulphate symporter
1642	 65.03	0	1822273..1822578	-	101	94314189	-	Rmet_5270	-	XRE family transcriptional regulator
1643	 65.21	0	1822767..1824551	+	594	94314190	-	Rmet_5271	-	dihydroxy-acid dehydratase
1644	 65.83	0	1824559..1825278	+	239	94314191	-	Rmet_5272	-	hypothetical protein
1645	 65.12	0	1825358..1826326	+	322	94314192	-	Rmet_5273	-	hypothetical protein
1646	 67.94	+1	1826370..1827308	+	312	94314193	-	Rmet_5274	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1647	 69.18	+1	1827416..1828249	+	277	94314194	-	Rmet_5275	-	intradiol ring-cleavage dioxygenase
1648	 65.60	0	1828535..1830124	+	529	94314195	-	Rmet_5276	-	EAL-containing signal transduction protein
1649	 68.61	+1	1830199..1830816	+	205	94314196	-	Rmet_5277	-	lysine exporter protein LysE/YggA
1650	 67.27	0	1830871..1831866	-	331	94314197	-	Rmet_5278	-	hypothetical protein
1651	 69.26	+1	1831967..1832893	-	308	94314198	-	Rmet_5279	-	LysR family transcriptional regulator
1652	 61.79	0	1832956..1833591	+	211	94314199	-	Rmet_5280	-	hypothetical protein
1653	 65.20	0	1833756..1834097	+	113	94314200	-	Rmet_5281	-	putative signal peptide protein
1654	 60.50	0	1834261..1835265	-	334	94314201	-	Rmet_5282	-	dienelactone hydrolase
1655	 61.94	0	1835532..1836884	+	450	94314202	-	Rmet_5283	-	beta-lactamase
1656	 65.03	0	1837047..1838450	-	467	94314203	-	Rmet_5284	-	ATP-dependent RNA helicase DbpA
1657	 63.40	0	1838782..1839762	+	326	94314204	-	Rmet_5285	-	zinc-binding alcohol dehydrogenase
1658	 60.39	0	1839833..1840900	+	355	94314205	-	Rmet_5286	-	hypothetical protein
1659	 62.94	0	1841018..1842010	+	330	94314206	-	Rmet_5287	-	hypothetical protein
1660	 61.76	0	1842320..1843480	+	386	94314207	-	Rmet_5288	-	porin
1661	 63.64	0	1843575..1844333	+	252	94314208	-	Rmet_5289	-	short-chain dehydrogenase/reductase SDR
1662	 62.91	0	1844413..1845237	-	274	94314209	-	Rmet_5290	-	short-chain dehydrogenase/reductase SDR
63.77	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.