IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.77   STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1506	 65.57	0	1684167..1685720	-	517	94314053	-	Rmet_5134	-	AMP-dependent synthetase and ligase
1507	 65.88	0	1685829..1686719	+	296	94314054	-	Rmet_5135	-	LysR family transcriptional regulator
1508	 63.87	0	1686716..1687501	+	261	94314055	-	Rmet_5136	-	hypothetical protein
1509	 69.35	+1	1687503..1688174	-	223	94314056	-	Rmet_5137	-	ribonucleoside-triphosphate reductase, anaerobic-like protein
1510	 62.50	0	1688182..1688373	-	63	94314057	-	Rmet_5138	-	hypothetical protein
1511	 62.49	0	1688421..1690145	-	574	94314058	-	Rmet_5139	-	anaerobic ribonucleoside triphosphate reductase
1512	 66.73	0	1690356..1691933	-	525	94314059	-	Rmet_5140	-	acyl-CoA synthetase
1513	 66.26	0	1692009..1693247	-	412	94314060	-	Rmet_5141	-	acyl-CoA dehydrogenase-like protein
1514	 66.58	0	1693256..1694434	-	392	94314061	-	Rmet_5142	-	acyl-CoA dehydrogenase-like protein
1515	 65.04	0	1694489..1695472	-	327	94314062	-	Rmet_5143	-	acyl-CoA dehydrogenase-like protein
1516	 64.68	0	1695491..1696648	-	385	94314063	-	Rmet_5144	-	acyl-CoA dehydrogenase-like protein
1517	 64.50	0	1696768..1697550	-	260	94314064	-	Rmet_5145	-	enoyl-CoA hydratase
1518	 63.40	0	1697569..1698027	-	152	94314065	-	Rmet_5146	-	MaoC-like dehydratase
1519	 63.45	0	1698031..1698993	-	320	94314066	-	Rmet_5147	-	hypothetical protein
1520	 61.44	0	1699028..1700251	-	407	94314067	-	Rmet_5148	-	L-carnitine dehydratase/bile acid-inducible protein F
1521	 63.83	0	1700485..1701471	+	328	94314068	-	Rmet_5149	-	hypothetical protein
1522	 64.28	0	1701517..1702311	+	264	94314069	-	Rmet_5150	-	enoyl-CoA hydratase
1523	 63.26	0	1702521..1703429	+	302	94314070	-	Rmet_5151	-	LysR family transcriptional regulator
1524	 62.13	0	1703496..1704641	-	381	94314071	-	Rmet_5152	-	acyl-CoA dehydrogenase-like protein
1525	 64.85	0	1704697..1705686	-	329	94314072	-	Rmet_5153	-	hypothetical protein
1526	 67.32	+1	1705858..1706622	-	254	94314073	-	Rmet_5154	-	enoyl-CoA hydratase
1527	 67.06	0	1706633..1707400	-	255	94314074	-	Rmet_5155	-	short-chain dehydrogenase/reductase SDR
1528	 66.41	0	1707438..1708616	-	392	94314075	-	Rmet_5156	-	thiolase
1529	 65.44	0	1708828..1709640	+	270	94314076	-	Rmet_5157	-	IclR family transcriptional regulator
1530	 66.04	0	1709684..1711267	+	527	94314077	-	Rmet_5158	-	AMP-dependent synthetase and ligase
1531	 66.14	0	1711400..1712356	+	318	94314078	-	Rmet_5159	-	LysR family transcriptional regulator
1532	 67.07	0	1712557..1713810	+	417	94314079	-	Rmet_5160	-	beta-lactamase-like protein
1533	 66.18	0	1713820..1714845	+	341	94314080	-	Rmet_5161	-	hypothetical protein
1534	 66.51	0	1714867..1716165	+	432	94314081	-	Rmet_5162	-	hypothetical protein
1535	 64.78	0	1716394..1716552	-	52	94314082	-	Rmet_5163	-	autotransporter
1536	 63.64	0	1716581..1716910	+	109	94314083	-	Rmet_5164	-	hypothetical protein
1537	 67.53	+1	1717136..1717831	+	231	94314084	-	Rmet_5165	-	two component LuxR family transcriptional regulator
1538	 65.78	0	1717828..1719750	+	640	94314085	-	Rmet_5166	-	putative signal transduction histidine kinase
1539	 55.15	-2	1719840..1720247	+	135	94314086	-	Rmet_5167	-	twin-arginine translocation pathway signal
1540	 59.58	-1	1720353..1720592	+	79	94314087	-	Rmet_5168	-	hypothetical protein
1541	 59.57	-1	1720632..1721054	+	140	94314088	-	Rmet_5169	-	LysR family transcriptional regulator
1542	 58.67	-1	1721127..1721501	+	124	94314089	-	Rmet_5170	-	NUDIX hydrolase
1543	 50.66	-2	1721843..1722223	-	126	94314090	-	Rmet_5171	-	cold-shock DNA-binding protein family protein
1544	 56.04	-2	1723149..1723421	+	90	94314091	-	Rmet_5172	-	hypothetical protein
1545	 58.25	-1	1723635..1723919	+	94	94314092	-	Rmet_5173	-	hypothetical protein
1546	 58.56	-1	1724048..1724479	+	143	94314093	-	Rmet_5174	-	hypothetical protein
1547	 56.82	-1	1724909..1725172	+	87	94314094	-	Rmet_5175	-	hypothetical protein
1548	 49.55	-2	1725200..1725421	+	73	94314095	-	Rmet_5176	-	translation initiation factor IF-1
1549	 57.26	-1	1725543..1725914	-	123	94314096	-	Rmet_5177	-	hypothetical protein
1550	 58.10	-1	1725959..1726693	+	244	94314097	-	Rmet_5178	-	hypothetical protein
1551	 56.80	-1	1726823..1727278	-	151	94314098	-	Rmet_5179	-	hypothetical protein
1552	 55.42	-2	1727984..1728232	-	82	94314099	-	Rmet_5180	-	hypothetical protein
1553	 56.07	-2	1728306..1728824	-	172	94314100	-	Rmet_5181	-	hypothetical protein
1554	 59.81	-1	1728969..1729610	+	213	94314101	-	Rmet_5182	-	hypothetical protein
1555	 54.67	-2	1729892..1730341	+	149	94314102	-	Rmet_5183	-	hypothetical protein
1556	 58.74	-1	1730642..1731070	-	142	94314103	-	Rmet_5184	-	phenylacetic acid degradation-related protein
1557	 58.41	-1	1731775..1732452	+	225	94314104	-	Rmet_5185	-	carbonic anhydrase
1558	 60.43	0	1732472..1733161	+	229	94314105	-	Rmet_5186	-	Ion transport 2
1559	 65.28	0	1733172..1735112	-	646	94314106	-	Rmet_5187	-	putative Ig
1560	 65.25	0	1735775..1736056	+	93	94314107	-	Rmet_5188	-	galactose-binding protein regulator
1561	 62.53	0	1736408..1736794	+	128	94314108	-	Rmet_5189	-	glyoxalase/bleomycin resistance protein/dioxygenase
1562	 64.96	0	1736828..1737943	-	371	94314109	-	Rmet_5190	-	porin
1563	 63.66	0	1738061..1739488	-	475	94314110	-	Rmet_5191	-	amino acid permease-associated region
1564	 64.23	0	1739523..1740752	-	409	94314111	-	Rmet_5192	-	kynureninase
1565	 64.76	0	1740823..1741347	-	174	94314112	-	Rmet_5193	-	3-hydroxyanthranilate 3,4-dioxygenase
1566	 64.41	0	1741516..1742580	-	354	94314113	-	Rmet_5194	-	LysR family transcriptional regulator
1567	 61.44	0	1742738..1743886	+	382	94314114	-	Rmet_5195	-	porin
1568	 65.43	0	1743864..1745801	+	645	94314115	-	Rmet_5196	-	hypothetical protein
1569	 64.03	0	1745804..1746220	+	138	94314116	-	Rmet_5197	-	cytochrome c, class I
1570	 69.50	+1	1746268..1747221	-	317	94314117	-	Rmet_5198	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1571	 64.64	0	1747418..1748356	+	312	94314118	-	Rmet_5199	-	fumarylacetoacetate (FAA) hydrolase
1572	 65.68	0	1748411..1749016	+	201	94314119	-	Rmet_5200	-	glyoxalase/bleomycin resistance protein/dioxygenase
1573	 68.38	+1	1749028..1749960	+	310	94314120	-	Rmet_5201	-	lipase, active site
1574	 65.56	0	1750028..1750930	+	300	94314121	-	Rmet_5202	-	dihydrodipicolinate synthetase
1575	 67.57	+1	1750927..1751370	+	147	94314122	-	Rmet_5203	-	endoribonuclease L-PSP
1576	 67.34	+1	1751367..1751960	+	197	94314123	-	Rmet_5204	-	hypothetical protein
1577	 66.47	0	1752039..1753031	+	330	94314124	-	Rmet_5205	-	hypothetical protein
1578	 66.12	0	1753142..1754605	+	487	94314125	-	Rmet_5206	-	aldehyde dehydrogenase
1579	 67.88	+1	1754625..1755446	+	273	94314126	-	Rmet_5207	-	hydratase/decarboxylase
1580	 66.24	0	1755448..1756392	+	314	94314127	-	Rmet_5208	-	acetaldehyde dehydrogenase
1581	 66.76	0	1756403..1757440	+	345	94314128	-	Rmet_5209	-	4-hydroxy-2-ketovalerate aldolase
1582	 66.93	0	1757437..1758201	+	254	94314129	-	Rmet_5210	-	hydratase/decarboxylase
1583	 63.01	0	1758253..1758690	+	145	94314130	-	Rmet_5211	-	endoribonuclease L-PSP
1584	 63.27	0	1758687..1759688	+	333	94314131	-	Rmet_5212	-	amidohydrolase 2
1585	 66.22	0	1759761..1760426	-	221	94314132	-	Rmet_5213	-	GntR family transcriptional regulator
1586	 64.56	0	1760631..1761104	+	157	94314133	-	Rmet_5214	-	glyoxalase/bleomycin resistance protein/dioxygenase
1587	 61.63	0	1761739..1762929	-	396	94314134	-	Rmet_5215	-	hypothetical protein
1588	 62.33	0	1762904..1764172	-	422	94314135	-	Rmet_5216	-	hypothetical protein
1589	 60.20	-1	1764169..1765482	-	437	94314136	-	Rmet_5217	-	hypothetical protein
1590	 61.04	0	1765627..1765875	+	82	94314137	-	Rmet_5218	-	hypothetical protein
1591	 56.97	-1	1766037..1766603	+	188	94314138	-	Rmet_5219	-	hypothetical protein
1592	 62.03	0	1767028..1767954	-	308	94314139	-	Rmet_5220	-	LysR family transcriptional regulator
1593	 60.63	0	1767996..1769039	+	347	94314140	-	Rmet_5221	-	twin-arginine translocation pathway signal
1594	 63.66	0	1769036..1770232	+	398	94314141	-	Rmet_5222	-	peptidase M20D, amidohydrolase
1595	 59.62	-1	1770674..1771141	+	155	94314142	-	Rmet_5223	-	hypothetical protein
1596	 61.61	0	1771556..1772524	-	322	94314143	-	Rmet_5224	-	hypothetical protein
1597	 59.98	-1	1772706..1773752	-	348	94314144	-	Rmet_5225	-	hypothetical protein
1598	 59.39	-1	1773817..1775259	-	480	94314145	-	Rmet_5226	-	hypothetical protein
1599	 63.19	0	1775343..1776290	-	315	94314146	-	Rmet_5227	-	alpha/beta hydrolase fold
1600	 62.35	0	1776322..1777851	-	509	94314147	-	Rmet_5228	-	FAD dependent oxidoreductase
1601	 63.04	0	1777951..1778970	+	339	94314148	-	Rmet_5229	-	AraC family transcriptional regulator
1602	 61.42	0	1779508..1781013	-	501	94314149	-	Rmet_5230	-	aminotransferase, class V
1603	 62.79	0	1781442..1782086	+	214	94314150	-	Rmet_5231	-	ArsR family transcriptional regulator
1604	 62.56	0	1782090..1783451	+	453	94314151	-	Rmet_5232	-	cytochrome bd ubiquinol oxidase, subunit I
1605	 64.74	0	1783448..1784485	+	345	94314152	-	Rmet_5233	-	cytochrome d ubiquinol oxidase, subunit II
63.77	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.