IslandPathversion 1.0

IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.77 STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1466	 63.91	0	1637805..1638674	+	289	94314013	-	Rmet_5094	-	enoyl-CoA hydratase
1467	 64.79	0	1638740..1639750	-	336	94314014	-	Rmet_5095	-	malate/L-lactate dehydrogenase
1468	 65.66	0	1639788..1641275	-	495	94314015	-	Rmet_5096	-	aldehyde dehydrogenase
1469	 64.02	0	1641363..1642307	-	314	94314016	-	Rmet_5097	-	dihydrodipicolinate synthetase
1470	 62.10	0	1642709..1644088	+	459	94314017	-	Rmet_5098	-	major facilitator transporter
1471	 61.55	0	1644172..1644894	-	240	94314018	-	Rmet_5099	-	GntR family transcriptional regulator
1472	 62.70	0	1644928..1645608	-	226	94314019	-	Rmet_5100	-	GntR family transcriptional regulator
1473	 63.61	0	1645719..1646666	-	315	94314020	-	Rmet_5101	-	LysR family transcriptional regulator
1474	 67.32	+1	1646744..1647820	+	358	94314021	-	Rmet_5102	-	zinc-binding alcohol dehydrogenase
1475	 66.29	0	1647897..1648430	-	177	94314022	-	Rmet_5103	-	bifunctional deaminase-reductase-like protein
1476	 63.78	0	1648600..1649637	+	345	94314023	-	Rmet_5104	-	bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase
1477	 62.48	0	1649723..1651156	+	477	94314024	-	Rmet_5105	-	putative nicotinate phosphoribosyltransferase
1478	 67.83	+1	1651328..1652275	+	315	94314025	-	Rmet_5106	-	LysR family transcriptional regulator
1479	 66.15	0	1652282..1653058	-	258	94314026	-	Rmet_5107	-	enoyl-CoA hydratase
1480	 62.79	0	1653072..1654052	-	326	94314027	-	Rmet_5108	-	hypothetical protein
1481	 64.39	0	1654103..1655287	-	394	94314028	-	Rmet_5109	-	L-carnitine dehydratase/bile acid-inducible protein F
1482	 66.90	0	1655337..1657484	-	715	94314029	-	Rmet_5110	-	short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase
1483	 65.13	0	1657529..1658701	-	390	94314030	-	Rmet_5111	-	thiolase
1484	 65.91	0	1658698..1659096	-	132	94314031	-	Rmet_5112	-	hypothetical protein
1485	 64.95	0	1659105..1660097	-	330	94314032	-	Rmet_5113	-	hypothetical protein
1486	 64.43	0	1660648..1662036	+	462	94314033	-	Rmet_5114	-	glutamate dehydrogenase
1487	 65.03	0	1662226..1662837	+	203	94314034	-	Rmet_5115	-	lysine exporter protein LysE/YggA
1488	 58.53	-1	1662911..1663930	-	339	94314035	-	Rmet_5116	-	fimbrial protein
1489	 62.14	0	1664102..1664587	+	161	94314036	-	Rmet_5117	-	hypothetical protein
1490	 63.20	0	1664825..1665892	+	355	94314037	-	Rmet_5118	-	porin
1491	 64.56	0	1666289..1667188	+	299	94314038	-	Rmet_5119	-	taurine catabolism dioxygenase TauD/TfdA
1492	 62.90	0	1667213..1668274	+	353	94314039	-	Rmet_5120	-	hypothetical protein
1493	 62.47	0	1668515..1668943	+	142	94314040	-	Rmet_5121	-	molybdenum-pterin binding domain-containing protein
1494	 65.20	0	1669058..1670968	-	636	94314041	-	Rmet_5122	-	Poly-beta-hydroxybutyrate polymerase-like protein
1495	 61.58	0	1670972..1671718	-	248	94314042	-	Rmet_5123	-	3-oxoacyl-[acyl-carrier-protein] reductase
1496	 64.66	0	1671715..1672263	-	182	94314043	-	Rmet_5124	-	hypothetical protein
1497	 63.25	0	1672726..1674219	+	497	94314044	-	Rmet_5125	-	hypothetical protein
1498	 62.45	0	1674258..1675181	-	307	94314045	-	Rmet_5126	-	hypothetical protein
1499	 65.34	0	1675421..1677385	+	654	94314046	-	Rmet_5127	-	sigma-54 dependent trancsriptional regulator
1500	 63.71	0	1677444..1678964	-	506	94314047	-	Rmet_5128	-	aldehyde dehydrogenase
1501	 66.74	0	1679196..1680542	-	448	94314048	-	Rmet_5129	-	periplasmic sensor signal transduction histidine kinase
1502	 63.99	0	1680539..1681210	-	223	94314049	-	Rmet_5130	-	two component transcriptional regulator
1503	 65.56	0	1681216..1681578	-	120	94314050	-	Rmet_5131	-	hypothetical protein
1504	 65.17	0	1681882..1682880	-	332	94314051	-	Rmet_5132	-	hypothetical protein
1505	 64.37	0	1682981..1684156	-	391	94314052	-	Rmet_5133	-	acyl-CoA dehydrogenase-like protein
1506	 65.57	0	1684167..1685720	-	517	94314053	-	Rmet_5134	-	AMP-dependent synthetase and ligase
1507	 65.88	0	1685829..1686719	+	296	94314054	-	Rmet_5135	-	LysR family transcriptional regulator
1508	 63.87	0	1686716..1687501	+	261	94314055	-	Rmet_5136	-	hypothetical protein
1509	 69.35	+1	1687503..1688174	-	223	94314056	-	Rmet_5137	-	ribonucleoside-triphosphate reductase, anaerobic-like protein
1510	 62.50	0	1688182..1688373	-	63	94314057	-	Rmet_5138	-	hypothetical protein
1511	 62.49	0	1688421..1690145	-	574	94314058	-	Rmet_5139	-	anaerobic ribonucleoside triphosphate reductase
1512	 66.73	0	1690356..1691933	-	525	94314059	-	Rmet_5140	-	acyl-CoA synthetase
1513	 66.26	0	1692009..1693247	-	412	94314060	-	Rmet_5141	-	acyl-CoA dehydrogenase-like protein
1514	 66.58	0	1693256..1694434	-	392	94314061	-	Rmet_5142	-	acyl-CoA dehydrogenase-like protein
1515	 65.04	0	1694489..1695472	-	327	94314062	-	Rmet_5143	-	acyl-CoA dehydrogenase-like protein
1516	 64.68	0	1695491..1696648	-	385	94314063	-	Rmet_5144	-	acyl-CoA dehydrogenase-like protein
1517	 64.50	0	1696768..1697550	-	260	94314064	-	Rmet_5145	-	enoyl-CoA hydratase
1518	 63.40	0	1697569..1698027	-	152	94314065	-	Rmet_5146	-	MaoC-like dehydratase
1519	 63.45	0	1698031..1698993	-	320	94314066	-	Rmet_5147	-	hypothetical protein
1520	 61.44	0	1699028..1700251	-	407	94314067	-	Rmet_5148	-	L-carnitine dehydratase/bile acid-inducible protein F
1521	 63.83	0	1700485..1701471	+	328	94314068	-	Rmet_5149	-	hypothetical protein
1522	 64.28	0	1701517..1702311	+	264	94314069	-	Rmet_5150	-	enoyl-CoA hydratase
1523	 63.26	0	1702521..1703429	+	302	94314070	-	Rmet_5151	-	LysR family transcriptional regulator
1524	 62.13	0	1703496..1704641	-	381	94314071	-	Rmet_5152	-	acyl-CoA dehydrogenase-like protein
1525	 64.85	0	1704697..1705686	-	329	94314072	-	Rmet_5153	-	hypothetical protein
1526	 67.32	+1	1705858..1706622	-	254	94314073	-	Rmet_5154	-	enoyl-CoA hydratase
1527	 67.06	0	1706633..1707400	-	255	94314074	-	Rmet_5155	-	short-chain dehydrogenase/reductase SDR
1528	 66.41	0	1707438..1708616	-	392	94314075	-	Rmet_5156	-	thiolase
1529	 65.44	0	1708828..1709640	+	270	94314076	-	Rmet_5157	-	IclR family transcriptional regulator
1530	 66.04	0	1709684..1711267	+	527	94314077	-	Rmet_5158	-	AMP-dependent synthetase and ligase
1531	 66.14	0	1711400..1712356	+	318	94314078	-	Rmet_5159	-	LysR family transcriptional regulator
1532	 67.07	0	1712557..1713810	+	417	94314079	-	Rmet_5160	-	beta-lactamase-like protein
1533	 66.18	0	1713820..1714845	+	341	94314080	-	Rmet_5161	-	hypothetical protein
1534	 66.51	0	1714867..1716165	+	432	94314081	-	Rmet_5162	-	hypothetical protein
1535	 64.78	0	1716394..1716552	-	52	94314082	-	Rmet_5163	-	autotransporter
1536	 63.64	0	1716581..1716910	+	109	94314083	-	Rmet_5164	-	hypothetical protein
1537	 67.53	+1	1717136..1717831	+	231	94314084	-	Rmet_5165	-	two component LuxR family transcriptional regulator
1538	 65.78	0	1717828..1719750	+	640	94314085	-	Rmet_5166	-	putative signal transduction histidine kinase
1539	 55.15	-2	1719840..1720247	+	135	94314086	-	Rmet_5167	-	twin-arginine translocation pathway signal
1540	 59.58	-1	1720353..1720592	+	79	94314087	-	Rmet_5168	-	hypothetical protein
1541	 59.57	-1	1720632..1721054	+	140	94314088	-	Rmet_5169	-	LysR family transcriptional regulator
1542	 58.67	-1	1721127..1721501	+	124	94314089	-	Rmet_5170	-	NUDIX hydrolase
1543	 50.66	-2	1721843..1722223	-	126	94314090	-	Rmet_5171	-	cold-shock DNA-binding protein family protein
1544	 56.04	-2	1723149..1723421	+	90	94314091	-	Rmet_5172	-	hypothetical protein
1545	 58.25	-1	1723635..1723919	+	94	94314092	-	Rmet_5173	-	hypothetical protein
1546	 58.56	-1	1724048..1724479	+	143	94314093	-	Rmet_5174	-	hypothetical protein
1547	 56.82	-1	1724909..1725172	+	87	94314094	-	Rmet_5175	-	hypothetical protein
1548	 49.55	-2	1725200..1725421	+	73	94314095	-	Rmet_5176	-	translation initiation factor IF-1
1549	 57.26	-1	1725543..1725914	-	123	94314096	-	Rmet_5177	-	hypothetical protein
1550	 58.10	-1	1725959..1726693	+	244	94314097	-	Rmet_5178	-	hypothetical protein
1551	 56.80	-1	1726823..1727278	-	151	94314098	-	Rmet_5179	-	hypothetical protein
1552	 55.42	-2	1727984..1728232	-	82	94314099	-	Rmet_5180	-	hypothetical protein
1553	 56.07	-2	1728306..1728824	-	172	94314100	-	Rmet_5181	-	hypothetical protein
1554	 59.81	-1	1728969..1729610	+	213	94314101	-	Rmet_5182	-	hypothetical protein
1555	 54.67	-2	1729892..1730341	+	149	94314102	-	Rmet_5183	-	hypothetical protein
1556	 58.74	-1	1730642..1731070	-	142	94314103	-	Rmet_5184	-	phenylacetic acid degradation-related protein
1557	 58.41	-1	1731775..1732452	+	225	94314104	-	Rmet_5185	-	carbonic anhydrase
1558	 60.43	0	1732472..1733161	+	229	94314105	-	Rmet_5186	-	Ion transport 2
1559	 65.28	0	1733172..1735112	-	646	94314106	-	Rmet_5187	-	putative Ig
1560	 65.25	0	1735775..1736056	+	93	94314107	-	Rmet_5188	-	galactose-binding protein regulator
1561	 62.53	0	1736408..1736794	+	128	94314108	-	Rmet_5189	-	glyoxalase/bleomycin resistance protein/dioxygenase
1562	 64.96	0	1736828..1737943	-	371	94314109	-	Rmet_5190	-	porin
1563	 63.66	0	1738061..1739488	-	475	94314110	-	Rmet_5191	-	amino acid permease-associated region
1564	 64.23	0	1739523..1740752	-	409	94314111	-	Rmet_5192	-	kynureninase
1565	 64.76	0	1740823..1741347	-	174	94314112	-	Rmet_5193	-	3-hydroxyanthranilate 3,4-dioxygenase
63.77	MEAN

3.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.