IslandPathversion 1.0

IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.77 STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1417	 62.79	0	1582181..1582438	-	85	94313964	-	Rmet_5042	-	hypothetical protein
1418	 61.19	0	1582483..1583139	+	218	94313965	-	Rmet_5043	-	phasin
1419	 63.59	0	1583253..1584326	-	357	94313966	-	Rmet_5044	-	MscS mechanosensitive ion channel
1420	 67.17	0	1584488..1585477	-	329	94313967	-	Rmet_5045	-	formimidoylglutamase
1421	 63.79	0	1585467..1586891	-	474	94313968	-	Rmet_5046	-	amino acid permease-associated region
1422	 66.60	0	1586935..1588491	-	518	94313969	-	Rmet_5047	-	histidine ammonia-lyase
1423	 65.60	0	1588507..1590186	-	559	94313970	-	Rmet_5048	-	urocanate hydratase
1424	 64.81	0	1590405..1591160	-	251	94313971	-	Rmet_5049	-	histidine utilization repressor
1425	 65.57	0	1591434..1593536	-	700	94313972	-	Rmet_5050	-	hypothetical protein
1426	 65.97	0	1593585..1594445	-	286	94313973	-	Rmet_5051	-	hypothetical protein
1427	 66.67	0	1594741..1595799	+	352	94313974	-	Rmet_5052	-	twin-arginine translocation pathway signal
1428	 66.05	0	1595868..1597478	-	536	94313975	-	Rmet_5053	-	ABC transporter related
1429	 64.32	0	1597672..1598865	-	397	94313976	-	Rmet_5054	-	peptidase M24
1430	 63.78	0	1598894..1599862	-	322	94313977	-	Rmet_5055	-	hypothetical protein
1431	 62.07	0	1599988..1600422	+	144	94313978	-	Rmet_5056	-	hypothetical protein
1432	 63.72	0	1600491..1601135	-	214	94313979	-	Rmet_5057	-	TetR family transcriptional regulator
1433	 67.58	+1	1601383..1602369	+	328	94313980	-	Rmet_5058	-	hypothetical protein
1434	 67.40	+1	1602411..1603091	+	226	94313981	-	Rmet_5059	-	3-oxoacid CoA-transferase, subunit A
1435	 65.38	0	1603084..1603785	+	233	94313982	-	Rmet_5060	-	butyryl-CoA:acetate CoA transferase
1436	 68.15	+1	1603838..1604845	+	335	94313983	-	Rmet_5061	-	hypothetical protein
1437	 66.89	0	1604864..1605754	-	296	94313984	-	Rmet_5062	-	intradiol ring-cleavage dioxygenase
1438	 69.66	+1	1605796..1606863	-	355	94313985	-	Rmet_5063	-	iron-containing alcohol dehydrogenase
1439	 63.62	0	1606972..1607430	-	152	94313986	-	Rmet_5064	-	hypothetical protein
1440	 60.49	0	1607542..1607946	-	134	94313987	-	Rmet_5065	-	hypothetical protein
1441	 63.45	0	1607943..1609247	-	434	94313988	-	Rmet_5066	-	major facilitator transporter
1442	 67.00	0	1609439..1610626	-	395	94313989	-	Rmet_5067	-	major facilitator transporter
1443	 62.63	0	1610654..1611148	-	164	94313990	-	Rmet_5068	-	GCN5-related N-acetyltransferase
1444	 62.07	0	1611617..1612726	+	369	94313991	-	Rmet_5070	-	hydroxyneurosporene-O-methyltransferase
1445	 59.88	-1	1612967..1613467	+	166	94313992	-	Rmet_5071	-	hypothetical protein
1446	 65.91	0	1613708..1613839	-	43	94313993	-	Rmet_5072	-	hypothetical protein
1447	 50.53	-2	1614132..1615160	-	342	94313994	-	Rmet_5073	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1448	 44.04	-2	1615190..1616179	-	329	94313995	-	Rmet_5074	-	hypothetical protein
1449	 60.77	0	1616240..1616833	-	197	94313996	-	Rmet_5075	-	NADPH-dependent FMN reductase
1450	 58.51	-1	1617795..1618223	+	142	94313997	-	Rmet_5076	-	hypothetical protein
1451	 60.81	0	1619296..1620354	+	352	94313998	-	Rmet_5079	-	hypothetical protein
1452	 69.99	+1	1620992..1621684	+	230	94313999	-	Rmet_5080	-	hypothetical protein
1453	 68.18	+1	1621694..1624789	+	1031	94314000	-	Rmet_5081	-	hypothetical protein
1454	 66.21	0	1624786..1625439	+	217	94314001	-	Rmet_5082	-	hypothetical protein
1455	 67.24	0	1625432..1626130	+	232	94314002	-	Rmet_5083	-	hypothetical protein
1456	 63.06	0	1626280..1626723	+	147	94314003	-	Rmet_5084	-	cupin 2, barrel
1457	 66.27	0	1626766..1627521	-	251	94314004	-	Rmet_5085	-	transcriptional regulator
1458	 69.69	+1	1627722..1628879	+	385	94314005	-	Rmet_5086	-	FAD dependent oxidoreductase
1459	 67.15	0	1628962..1630410	+	482	94314006	-	Rmet_5087	-	hypothetical protein
1460	 66.22	0	1630488..1632071	+	527	94314007	-	Rmet_5088	-	extracellular solute-binding protein
1461	 67.20	0	1632083..1633018	+	311	94314008	-	Rmet_5089	-	binding-protein-dependent transport systems inner membrane component
1462	 70.67	+1	1633025..1633924	+	299	94314009	-	Rmet_5090	-	binding-protein-dependent transport systems inner membrane component
1463	 67.72	+1	1633938..1634984	+	348	94314010	-	Rmet_5091	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein
1464	 68.84	+1	1634981..1635994	+	337	94314011	-	Rmet_5092	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein
1465	 67.41	+1	1636007..1637491	+	494	94314012	-	Rmet_5093	-	D-aminoacylase-like protein
1466	 63.91	0	1637805..1638674	+	289	94314013	-	Rmet_5094	-	enoyl-CoA hydratase
1467	 64.79	0	1638740..1639750	-	336	94314014	-	Rmet_5095	-	malate/L-lactate dehydrogenase
1468	 65.66	0	1639788..1641275	-	495	94314015	-	Rmet_5096	-	aldehyde dehydrogenase
1469	 64.02	0	1641363..1642307	-	314	94314016	-	Rmet_5097	-	dihydrodipicolinate synthetase
1470	 62.10	0	1642709..1644088	+	459	94314017	-	Rmet_5098	-	major facilitator transporter
1471	 61.55	0	1644172..1644894	-	240	94314018	-	Rmet_5099	-	GntR family transcriptional regulator
1472	 62.70	0	1644928..1645608	-	226	94314019	-	Rmet_5100	-	GntR family transcriptional regulator
1473	 63.61	0	1645719..1646666	-	315	94314020	-	Rmet_5101	-	LysR family transcriptional regulator
1474	 67.32	+1	1646744..1647820	+	358	94314021	-	Rmet_5102	-	zinc-binding alcohol dehydrogenase
1475	 66.29	0	1647897..1648430	-	177	94314022	-	Rmet_5103	-	bifunctional deaminase-reductase-like protein
1476	 63.78	0	1648600..1649637	+	345	94314023	-	Rmet_5104	-	bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase
1477	 62.48	0	1649723..1651156	+	477	94314024	-	Rmet_5105	-	putative nicotinate phosphoribosyltransferase
1478	 67.83	+1	1651328..1652275	+	315	94314025	-	Rmet_5106	-	LysR family transcriptional regulator
1479	 66.15	0	1652282..1653058	-	258	94314026	-	Rmet_5107	-	enoyl-CoA hydratase
1480	 62.79	0	1653072..1654052	-	326	94314027	-	Rmet_5108	-	hypothetical protein
1481	 64.39	0	1654103..1655287	-	394	94314028	-	Rmet_5109	-	L-carnitine dehydratase/bile acid-inducible protein F
1482	 66.90	0	1655337..1657484	-	715	94314029	-	Rmet_5110	-	short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase
1483	 65.13	0	1657529..1658701	-	390	94314030	-	Rmet_5111	-	thiolase
1484	 65.91	0	1658698..1659096	-	132	94314031	-	Rmet_5112	-	hypothetical protein
1485	 64.95	0	1659105..1660097	-	330	94314032	-	Rmet_5113	-	hypothetical protein
1486	 64.43	0	1660648..1662036	+	462	94314033	-	Rmet_5114	-	glutamate dehydrogenase
1487	 65.03	0	1662226..1662837	+	203	94314034	-	Rmet_5115	-	lysine exporter protein LysE/YggA
1488	 58.53	-1	1662911..1663930	-	339	94314035	-	Rmet_5116	-	fimbrial protein
1489	 62.14	0	1664102..1664587	+	161	94314036	-	Rmet_5117	-	hypothetical protein
1490	 63.20	0	1664825..1665892	+	355	94314037	-	Rmet_5118	-	porin
1491	 64.56	0	1666289..1667188	+	299	94314038	-	Rmet_5119	-	taurine catabolism dioxygenase TauD/TfdA
1492	 62.90	0	1667213..1668274	+	353	94314039	-	Rmet_5120	-	hypothetical protein
1493	 62.47	0	1668515..1668943	+	142	94314040	-	Rmet_5121	-	molybdenum-pterin binding domain-containing protein
1494	 65.20	0	1669058..1670968	-	636	94314041	-	Rmet_5122	-	Poly-beta-hydroxybutyrate polymerase-like protein
1495	 61.58	0	1670972..1671718	-	248	94314042	-	Rmet_5123	-	3-oxoacyl-[acyl-carrier-protein] reductase
1496	 64.66	0	1671715..1672263	-	182	94314043	-	Rmet_5124	-	hypothetical protein
1497	 63.25	0	1672726..1674219	+	497	94314044	-	Rmet_5125	-	hypothetical protein
1498	 62.45	0	1674258..1675181	-	307	94314045	-	Rmet_5126	-	hypothetical protein
1499	 65.34	0	1675421..1677385	+	654	94314046	-	Rmet_5127	-	sigma-54 dependent trancsriptional regulator
1500	 63.71	0	1677444..1678964	-	506	94314047	-	Rmet_5128	-	aldehyde dehydrogenase
1501	 66.74	0	1679196..1680542	-	448	94314048	-	Rmet_5129	-	periplasmic sensor signal transduction histidine kinase
1502	 63.99	0	1680539..1681210	-	223	94314049	-	Rmet_5130	-	two component transcriptional regulator
1503	 65.56	0	1681216..1681578	-	120	94314050	-	Rmet_5131	-	hypothetical protein
1504	 65.17	0	1681882..1682880	-	332	94314051	-	Rmet_5132	-	hypothetical protein
1505	 64.37	0	1682981..1684156	-	391	94314052	-	Rmet_5133	-	acyl-CoA dehydrogenase-like protein
1506	 65.57	0	1684167..1685720	-	517	94314053	-	Rmet_5134	-	AMP-dependent synthetase and ligase
1507	 65.88	0	1685829..1686719	+	296	94314054	-	Rmet_5135	-	LysR family transcriptional regulator
1508	 63.87	0	1686716..1687501	+	261	94314055	-	Rmet_5136	-	hypothetical protein
1509	 69.35	+1	1687503..1688174	-	223	94314056	-	Rmet_5137	-	ribonucleoside-triphosphate reductase, anaerobic-like protein
1510	 62.50	0	1688182..1688373	-	63	94314057	-	Rmet_5138	-	hypothetical protein
1511	 62.49	0	1688421..1690145	-	574	94314058	-	Rmet_5139	-	anaerobic ribonucleoside triphosphate reductase
1512	 66.73	0	1690356..1691933	-	525	94314059	-	Rmet_5140	-	acyl-CoA synthetase
1513	 66.26	0	1692009..1693247	-	412	94314060	-	Rmet_5141	-	acyl-CoA dehydrogenase-like protein
1514	 66.58	0	1693256..1694434	-	392	94314061	-	Rmet_5142	-	acyl-CoA dehydrogenase-like protein
1515	 65.04	0	1694489..1695472	-	327	94314062	-	Rmet_5143	-	acyl-CoA dehydrogenase-like protein
1516	 64.68	0	1695491..1696648	-	385	94314063	-	Rmet_5144	-	acyl-CoA dehydrogenase-like protein
63.77	MEAN

3.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.