IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.77   STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1363	 61.62	0	1517421..1518233	+	270	94313910	-	Rmet_4988	-	NLPA lipoprotein
1364	 67.29	+1	1518762..1521308	+	848	94313911	-	Rmet_4989	-	endonuclease/exonuclease/phosphatase
1365	 71.34	+2	1521296..1521958	+	220	94313912	-	Rmet_4990	-	rhomboid-like protein
1366	 63.96	0	1521917..1523098	-	393	94313913	-	Rmet_4991	-	porin
1367	 65.81	0	1523286..1524800	-	504	94313914	-	Rmet_4992	-	major facilitator transporter
1368	 65.59	0	1524799..1526379	+	526	94313915	-	Rmet_4993	-	major facilitator transporter
1369	 65.10	0	1526702..1527847	+	381	94313916	-	Rmet_4994	-	porin
1370	 57.36	-1	1527863..1528507	+	214	94313917	-	Rmet_4995	-	hypothetical protein
1371	 68.29	+1	1528756..1529310	-	184	94313918	-	Rmet_4996	-	hypothetical protein
1372	 51.60	-2	1529538..1529849	-	103	94313919	-	Rmet_4997	-	hypothetical protein
1373	 61.10	0	1530030..1531376	-	448	94313920	-	Rmet_4998	-	citrate carrier protein
1374	 61.21	0	1531904..1533424	-	506	94313921	-	Rmet_4999	-	hypothetical protein
1375	 61.86	0	1533468..1535006	-	512	94313922	-	Rmet_5000	-	hypothetical protein
1376	 61.46	0	1535347..1535442	-	31	94313923	-	Rmet_5001	-	hypothetical protein
1377	 63.80	0	1535544..1536869	-	441	94313924	-	Rmet_5002	-	major facilitator transporter
1378	 66.89	0	1536903..1537355	-	150	94313925	-	Rmet_5003	-	MarR family transcriptional regulator
1379	 60.28	0	1537595..1537876	+	93	94313926	-	Rmet_5004	-	antibiotic biosynthesis monooxygenase
1380	 61.93	0	1538204..1538773	-	189	94313927	-	Rmet_5005	-	isochorismatase hydrolase
1381	 63.70	0	1538776..1539213	-	145	94313928	-	Rmet_5006	-	hypothetical protein
1382	 62.50	0	1539295..1539870	+	191	94313929	-	Rmet_5007	-	hypothetical protein
1383	 57.84	-1	1539965..1540168	+	67	94313930	-	Rmet_5008	-	CsbD-like protein
1384	 67.77	+1	1540427..1541692	-	421	94313931	-	Rmet_5009	-	HI0933-like protein
1385	 60.66	0	1541767..1542399	+	210	94313932	-	Rmet_5010	-	hypothetical protein
1386	 65.14	0	1542425..1543804	-	459	94313933	-	Rmet_5011	-	mercuric reductase
1387	 64.53	0	1544106..1544573	+	155	94313934	-	Rmet_5012	-	cupin 2, barrel
1388	 65.40	0	1544735..1546309	+	524	94313935	-	Rmet_5013	-	FAD dependent oxidoreductase
1389	 66.07	0	1546368..1547375	+	335	94313936	-	Rmet_5014	-	aldo/keto reductase
1390	 68.04	+1	1547708..1549381	+	557	94313937	-	Rmet_5015	-	glucose-methanol-choline oxidoreductase
1391	 66.16	0	1549414..1551180	+	588	94313938	-	Rmet_5016	-	hypothetical protein
1392	 68.50	+1	1551212..1552633	+	473	94313939	-	Rmet_5017	-	aldehyde dehydrogenase
1393	 72.30	+2	1552713..1553351	-	212	94313940	-	Rmet_5018	-	hypothetical protein
1394	 69.75	+1	1553502..1554668	+	388	94313941	-	Rmet_5019	-	L-carnitine dehydratase/bile acid-inducible protein F
1395	 66.20	0	1554665..1555096	+	143	94313942	-	Rmet_5020	-	thioesterase superfamily protein
1396	 70.60	+1	1555148..1557715	-	855	94313943	-	Rmet_5021	-	ATP-dependent transcription regulator LuxR
1397	 67.41	+1	1557966..1560809	+	947	94313944	-	Rmet_5022	-	ATP-dependent transcription regulator LuxR
1398	 68.09	+1	1560983..1562878	+	631	94313945	-	Rmet_5023	-	feruloyl-CoA synthase
1399	 63.77	0	1562916..1564055	+	379	94313946	-	Rmet_5024	-	acyl-CoA dehydrogenase-like protein
1400	 65.91	0	1564108..1565295	+	395	94313947	-	Rmet_5025	-	lipid-transfer protein
1401	 64.85	0	1565307..1565747	+	146	94313948	-	Rmet_5026	-	hypothetical protein
1402	 63.55	0	1565761..1566177	+	138	94313949	-	Rmet_5027	-	MaoC-like dehydratase
1403	 64.85	0	1566220..1567044	+	274	94313950	-	Rmet_5028	-	short-chain dehydrogenase/reductase SDR
1404	 62.70	0	1567176..1568510	-	444	94313951	-	Rmet_5029	-	lipolytic enzyme, G-D-S-L
1405	 63.93	0	1568927..1569328	+	133	94313952	-	Rmet_5030	-	hypothetical protein
1406	 67.28	0	1569401..1570702	+	433	94313953	-	Rmet_5031	-	putative outer membrane cation efflux protein
1407	 64.95	0	1570699..1572216	+	505	94313954	-	Rmet_5032	-	secretion protein HlyD
1408	 64.46	0	1572213..1575380	+	1055	94313955	-	Rmet_5033	-	heavy metal efflux pump CzcA
1409	 63.98	0	1575377..1575748	+	123	94313956	-	Rmet_5034	-	putative signal peptide protein
1410	 61.64	0	1575870..1576088	-	72	94313957	-	Rmet_5035	-	hypothetical protein
1411	 58.97	-1	1576116..1576349	-	77	94313958	-	Rmet_5036	-	hypothetical protein
1412	 62.59	0	1576563..1577003	-	146	94313959	-	Rmet_5037	-	phenylacetic acid degradation-related protein
1413	 67.05	0	1577105..1578151	-	348	94313960	-	Rmet_5038	-	hypothetical protein
1414	 65.58	0	1578194..1580029	-	611	94313961	-	Rmet_5039	-	acetolactate synthase, large subunit
1415	 63.80	0	1580047..1580778	+	243	94313962	-	Rmet_5040	-	GntR family transcriptional regulator
1416	 63.51	0	1580857..1582059	-	400	94313963	-	Rmet_5041	-	diguanylate cyclase
1417	 62.79	0	1582181..1582438	-	85	94313964	-	Rmet_5042	-	hypothetical protein
1418	 61.19	0	1582483..1583139	+	218	94313965	-	Rmet_5043	-	phasin
1419	 63.59	0	1583253..1584326	-	357	94313966	-	Rmet_5044	-	MscS mechanosensitive ion channel
1420	 67.17	0	1584488..1585477	-	329	94313967	-	Rmet_5045	-	formimidoylglutamase
1421	 63.79	0	1585467..1586891	-	474	94313968	-	Rmet_5046	-	amino acid permease-associated region
1422	 66.60	0	1586935..1588491	-	518	94313969	-	Rmet_5047	-	histidine ammonia-lyase
1423	 65.60	0	1588507..1590186	-	559	94313970	-	Rmet_5048	-	urocanate hydratase
1424	 64.81	0	1590405..1591160	-	251	94313971	-	Rmet_5049	-	histidine utilization repressor
1425	 65.57	0	1591434..1593536	-	700	94313972	-	Rmet_5050	-	hypothetical protein
1426	 65.97	0	1593585..1594445	-	286	94313973	-	Rmet_5051	-	hypothetical protein
1427	 66.67	0	1594741..1595799	+	352	94313974	-	Rmet_5052	-	twin-arginine translocation pathway signal
1428	 66.05	0	1595868..1597478	-	536	94313975	-	Rmet_5053	-	ABC transporter related
1429	 64.32	0	1597672..1598865	-	397	94313976	-	Rmet_5054	-	peptidase M24
1430	 63.78	0	1598894..1599862	-	322	94313977	-	Rmet_5055	-	hypothetical protein
1431	 62.07	0	1599988..1600422	+	144	94313978	-	Rmet_5056	-	hypothetical protein
1432	 63.72	0	1600491..1601135	-	214	94313979	-	Rmet_5057	-	TetR family transcriptional regulator
1433	 67.58	+1	1601383..1602369	+	328	94313980	-	Rmet_5058	-	hypothetical protein
1434	 67.40	+1	1602411..1603091	+	226	94313981	-	Rmet_5059	-	3-oxoacid CoA-transferase, subunit A
1435	 65.38	0	1603084..1603785	+	233	94313982	-	Rmet_5060	-	butyryl-CoA:acetate CoA transferase
1436	 68.15	+1	1603838..1604845	+	335	94313983	-	Rmet_5061	-	hypothetical protein
1437	 66.89	0	1604864..1605754	-	296	94313984	-	Rmet_5062	-	intradiol ring-cleavage dioxygenase
1438	 69.66	+1	1605796..1606863	-	355	94313985	-	Rmet_5063	-	iron-containing alcohol dehydrogenase
1439	 63.62	0	1606972..1607430	-	152	94313986	-	Rmet_5064	-	hypothetical protein
1440	 60.49	0	1607542..1607946	-	134	94313987	-	Rmet_5065	-	hypothetical protein
1441	 63.45	0	1607943..1609247	-	434	94313988	-	Rmet_5066	-	major facilitator transporter
1442	 67.00	0	1609439..1610626	-	395	94313989	-	Rmet_5067	-	major facilitator transporter
1443	 62.63	0	1610654..1611148	-	164	94313990	-	Rmet_5068	-	GCN5-related N-acetyltransferase
1444	 62.07	0	1611617..1612726	+	369	94313991	-	Rmet_5070	-	hydroxyneurosporene-O-methyltransferase
1445	 59.88	-1	1612967..1613467	+	166	94313992	-	Rmet_5071	-	hypothetical protein
1446	 65.91	0	1613708..1613839	-	43	94313993	-	Rmet_5072	-	hypothetical protein
1447	 50.53	-2	1614132..1615160	-	342	94313994	-	Rmet_5073	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1448	 44.04	-2	1615190..1616179	-	329	94313995	-	Rmet_5074	-	hypothetical protein
1449	 60.77	0	1616240..1616833	-	197	94313996	-	Rmet_5075	-	NADPH-dependent FMN reductase
1450	 58.51	-1	1617795..1618223	+	142	94313997	-	Rmet_5076	-	hypothetical protein
1451	 60.81	0	1619296..1620354	+	352	94313998	-	Rmet_5079	-	hypothetical protein
1452	 69.99	+1	1620992..1621684	+	230	94313999	-	Rmet_5080	-	hypothetical protein
1453	 68.18	+1	1621694..1624789	+	1031	94314000	-	Rmet_5081	-	hypothetical protein
1454	 66.21	0	1624786..1625439	+	217	94314001	-	Rmet_5082	-	hypothetical protein
1455	 67.24	0	1625432..1626130	+	232	94314002	-	Rmet_5083	-	hypothetical protein
1456	 63.06	0	1626280..1626723	+	147	94314003	-	Rmet_5084	-	cupin 2, barrel
1457	 66.27	0	1626766..1627521	-	251	94314004	-	Rmet_5085	-	transcriptional regulator
1458	 69.69	+1	1627722..1628879	+	385	94314005	-	Rmet_5086	-	FAD dependent oxidoreductase
1459	 67.15	0	1628962..1630410	+	482	94314006	-	Rmet_5087	-	hypothetical protein
1460	 66.22	0	1630488..1632071	+	527	94314007	-	Rmet_5088	-	extracellular solute-binding protein
1461	 67.20	0	1632083..1633018	+	311	94314008	-	Rmet_5089	-	binding-protein-dependent transport systems inner membrane component
1462	 70.67	+1	1633025..1633924	+	299	94314009	-	Rmet_5090	-	binding-protein-dependent transport systems inner membrane component
63.77	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.