IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.77   STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1275	 61.95	0	1416612..1416929	+	105	94313822	-	Rmet_4900	-	XRE family transcriptional regulator
1276	 64.52	0	1416926..1418227	+	433	94313823	-	Rmet_4901	-	HipA-like protein
1277	 66.14	0	1418279..1419043	-	254	94313824	-	Rmet_4902	-	short-chain dehydrogenase/reductase SDR
1278	 67.83	+1	1419189..1419791	+	200	94313825	-	Rmet_4903	-	TetR family transcriptional regulator
1279	 66.28	0	1419833..1421140	+	435	94313826	-	Rmet_4904	-	major facilitator transporter
1280	 64.35	0	1421169..1422074	-	301	94313827	-	Rmet_4905	-	LysR family transcriptional regulator
1281	 63.83	0	1422156..1422578	+	140	94313828	-	Rmet_4906	-	glyoxalase/bleomycin resistance protein/dioxygenase
1282	 65.09	0	1422621..1423316	+	231	94313829	-	Rmet_4907	-	fumarylacetoacetate (FAA) hydrolase
1283	 67.87	+1	1423714..1424211	+	165	94313830	-	Rmet_4908	-	hypothetical protein
1284	 61.72	0	1424436..1425041	+	201	94313831	-	Rmet_4909	-	TetR family transcriptional regulator
1285	 62.68	0	1425067..1425918	-	283	94313832	-	Rmet_4910	-	exodeoxyribonuclease III
1286	 64.10	0	1426042..1426587	-	181	94313833	-	Rmet_4911	-	hypothetical protein
1287	 65.16	0	1426638..1427168	-	176	94313834	-	Rmet_4912	-	NosL
1288	 63.50	0	1427165..1427986	-	273	94313835	-	Rmet_4913	-	ABC-type transport system protein
1289	 65.83	0	1427986..1428936	-	316	94313836	-	Rmet_4914	-	ABC transporter related
1290	 63.69	0	1428914..1430191	-	425	94313837	-	Rmet_4915	-	periplasmic copper-binding
1291	 63.15	0	1430188..1432806	-	872	94313838	-	Rmet_4916	-	FMN-binding
1292	 60.95	0	1432862..1434802	-	646	94313839	-	Rmet_4917	-	nitrous-oxide reductase
1293	 67.39	+1	1435075..1435488	+	137	94313840	-	Rmet_4918	-	cytochrome c, class I
1294	 66.67	0	1435493..1436515	+	340	94313841	-	Rmet_4919	-	ApbE-like lipoprotein
1295	 61.02	0	1436750..1437652	+	300	94313842	-	Rmet_4920	-	phospholipid/glycerol acyltransferase
1296	 62.47	0	1437726..1438130	-	134	94313843	-	Rmet_4921	-	putative lipoprotein
1297	 62.15	0	1438209..1438496	-	95	94313844	-	Rmet_4922	-	hypothetical protein
1298	 66.67	0	1438772..1439098	+	108	94313845	-	Rmet_4923	-	thioredoxin-related
1299	 61.39	0	1439151..1439624	-	157	94313846	-	Rmet_4924	-	AsnC family transcriptional regulator
1300	 62.01	0	1439828..1440901	+	357	94313847	-	Rmet_4925	-	4-hydroxyphenylpyruvate dioxygenase
1301	 63.43	0	1441081..1442469	+	462	94313848	-	Rmet_4926	-	amino acid permease-associated region
1302	 66.67	0	1442527..1443723	+	398	94313849	-	Rmet_4927	-	aromatic amino acid aminotransferase
1303	 64.71	0	1443835..1445367	+	510	94313850	-	Rmet_4928	-	amino acid permease-associated region
1304	 61.72	0	1445465..1446172	+	235	94313851	-	Rmet_4929	-	glutathione S-transferase-like protein
1305	 68.63	+1	1446211..1447026	-	271	94313852	-	Rmet_4930	-	IclR family transcriptional regulator
1306	 64.65	0	1447146..1448138	+	330	94313853	-	Rmet_4931	-	hypothetical protein
1307	 65.22	0	1448170..1450512	+	780	94313854	-	Rmet_4932	-	ferredoxin
1308	 63.24	0	1450581..1451543	-	320	94313855	-	Rmet_4933	-	response regulator receiver (CheY-like) modulated CheW protein
1309	 66.96	0	1452036..1453418	+	460	94313856	-	Rmet_4934	-	xanthine/uracil/vitamin C permease
1310	 60.95	0	1453980..1454294	+	104	94313857	-	Rmet_4935	-	H-NS family DNA-binding protein
1311	 64.82	0	1454349..1455107	-	252	94313858	-	Rmet_4936	-	hypothetical protein
1312	 63.04	0	1455389..1456381	+	330	94313859	-	Rmet_4937	-	AsnC family transcriptional regulator
1313	 66.89	0	1456433..1456888	-	151	94313860	-	Rmet_4938	-	hypothetical protein
1314	 65.15	0	1456885..1457805	-	306	94313861	-	Rmet_4939	-	peptidase U32
1315	 66.96	0	1457839..1458867	-	342	94313862	-	Rmet_4940	-	peptidase U32
1316	 66.56	0	1458985..1459890	-	301	94313863	-	Rmet_4941	-	IclR family transcriptional regulator
1317	 66.39	0	1459974..1461422	+	482	94313864	-	Rmet_4942	-	succinate semialdehyde dehydrogenase
1318	 67.01	0	1461495..1462652	+	385	94313865	-	Rmet_4943	-	iron-containing alcohol dehydrogenase
1319	 65.96	0	1462949..1463230	+	93	94313866	-	Rmet_4944	-	hypothetical protein
1320	 64.52	0	1463212..1463676	-	154	94313867	-	Rmet_4945	-	PRC-barrel
1321	 65.22	0	1463930..1464688	-	252	94313868	-	Rmet_4946	-	citrate synthase
1322	 66.97	0	1464702..1465685	-	327	94313869	-	Rmet_4947	-	hypothetical protein
1323	 66.79	0	1465697..1466509	-	270	94313870	-	Rmet_4948	-	short-chain dehydrogenase/reductase SDR
1324	 65.01	0	1466525..1468090	-	521	94313871	-	Rmet_4949	-	acyl-CoA synthetase
1325	 66.96	0	1468229..1469254	+	341	94313872	-	Rmet_4950	-	LacI family transcription regulator
1326	 64.85	0	1469282..1470271	-	329	94313873	-	Rmet_4951	-	hypothetical protein
1327	 69.01	+1	1470299..1471108	-	269	94313874	-	Rmet_4952	-	short-chain dehydrogenase/reductase SDR
1328	 66.47	0	1471131..1472153	-	340	94313875	-	Rmet_4953	-	hypothetical protein
1329	 66.45	0	1472553..1473953	-	466	94313876	-	Rmet_4954	-	GntR family transcriptional regulator
1330	 62.90	0	1474133..1475566	+	477	94313877	-	Rmet_4955	-	cytochrome bd ubiquinol oxidase, subunit I
1331	 65.67	0	1475571..1476578	+	335	94313878	-	Rmet_4956	-	cytochrome d ubiquinol oxidase, subunit II
1332	 64.52	0	1476858..1477556	+	232	94313879	-	Rmet_4957	-	hypothetical protein
1333	 58.42	-1	1477794..1478885	-	363	94313880	-	Rmet_4958	-	fimbrial protein
1334	 63.06	0	1479072..1481675	-	867	94313881	-	Rmet_4959	-	fimbrial biogenesis outer membrane usher protein
1335	 62.84	0	1481790..1482494	-	234	94313882	-	Rmet_4960	-	pili assembly chaperone
1336	 63.24	0	1482623..1483177	-	184	94313883	-	Rmet_4961	-	fimbrial protein
1337	 61.76	0	1483479..1484375	-	298	94313884	-	Rmet_4962	-	diguanylate phosphodiesterase
1338	 63.88	0	1484588..1487956	-	1122	94313885	-	Rmet_4963	-	histidine kinase
1339	 63.24	0	1488210..1488881	-	223	94313886	-	Rmet_4964	-	two component LuxR family transcriptional regulator
1340	 62.17	0	1489159..1489803	-	214	94313887	-	Rmet_4965	-	two component LuxR family transcriptional regulator
1341	 65.51	0	1489978..1492833	-	951	94313888	-	Rmet_4966	-	histidine kinase
1342	 69.70	+1	1493114..1493377	+	87	94313889	-	Rmet_4967	-	hypothetical protein
1343	 60.45	0	1493459..1494487	-	342	94313890	-	Rmet_4968	-	di-haem cytochrome c peroxidase
1344	 63.74	0	1494741..1495835	-	364	94313891	-	Rmet_4969	-	hypothetical protein
1345	 67.76	+1	1495832..1498303	-	823	94313892	-	Rmet_4970	-	L-carnitine dehydratase/bile acid-inducible protein F
1346	 66.78	0	1498386..1501844	-	1152	94313893	-	Rmet_4971	-	carbamoyl-phosphate synthase L chain, ATP-binding
1347	 64.77	0	1501854..1503542	+	562	94313894	-	Rmet_4972	-	integrase catalytic subunit
1348	 64.03	0	1503545..1504453	+	302	94313895	-	Rmet_4973	-	TniB
1349	 61.66	0	1504450..1505667	+	405	94313896	-	Rmet_4974	-	TniQ
1350	 61.30	0	1505728..1506342	+	204	94313897	-	Rmet_4975	-	resolvase-like protein
1351	 55.56	-2	1506409..1506840	-	143	94313898	-	Rmet_4976	-	hypothetical protein
1352	 60.44	0	1506869..1508200	-	443	94313899	-	Rmet_4977	-	periplasmic sensor signal transduction histidine kinase
1353	 62.16	0	1508197..1508862	-	221	94313900	-	Rmet_4978	-	two component transcriptional regulator
1354	 62.85	0	1508885..1509643	-	252	94313901	-	Rmet_4979	-	hypothetical protein
1355	 59.33	-1	1509653..1510102	-	149	94313902	-	Rmet_4980	-	putative signal peptide protein
1356	 61.94	0	1510132..1510914	-	260	94313903	-	Rmet_4981	-	hypothetical protein
1357	 58.12	-1	1510985..1511581	-	198	94313904	-	Rmet_4982	-	undecaprenyl-diphosphatase
1358	 61.31	0	1511638..1511973	-	111	94313905	-	Rmet_4983	-	peptidase
1359	 66.41	0	1512097..1512864	+	255	94313906	-	Rmet_4984	-	hypothetical protein
1360	 64.91	0	1512871..1514178	-	435	94313907	-	Rmet_4985	-	sodium/hydrogen exchanger
1361	 65.55	0	1514538..1515251	+	237	94313908	-	Rmet_4986	-	two component LuxR family transcriptional regulator
1362	 66.82	0	1515260..1517245	+	661	94313909	-	Rmet_4987	-	periplasmic sensor signal transduction histidine kinase
1363	 61.62	0	1517421..1518233	+	270	94313910	-	Rmet_4988	-	NLPA lipoprotein
1364	 67.29	+1	1518762..1521308	+	848	94313911	-	Rmet_4989	-	endonuclease/exonuclease/phosphatase
1365	 71.34	+2	1521296..1521958	+	220	94313912	-	Rmet_4990	-	rhomboid-like protein
1366	 63.96	0	1521917..1523098	-	393	94313913	-	Rmet_4991	-	porin
1367	 65.81	0	1523286..1524800	-	504	94313914	-	Rmet_4992	-	major facilitator transporter
1368	 65.59	0	1524799..1526379	+	526	94313915	-	Rmet_4993	-	major facilitator transporter
1369	 65.10	0	1526702..1527847	+	381	94313916	-	Rmet_4994	-	porin
1370	 57.36	-1	1527863..1528507	+	214	94313917	-	Rmet_4995	-	hypothetical protein
1371	 68.29	+1	1528756..1529310	-	184	94313918	-	Rmet_4996	-	hypothetical protein
1372	 51.60	-2	1529538..1529849	-	103	94313919	-	Rmet_4997	-	hypothetical protein
1373	 61.10	0	1530030..1531376	-	448	94313920	-	Rmet_4998	-	citrate carrier protein
1374	 61.21	0	1531904..1533424	-	506	94313921	-	Rmet_4999	-	hypothetical protein
63.77	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.