IslandPathversion 1.0

IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.77 STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1241	 63.68	0	1377790..1381035	-	1081	94313788	-	Rmet_4866	-	hydrophobe/amphiphile efflux-1 HAE1
1242	 66.50	0	1381086..1382321	-	411	94313789	-	Rmet_4867	-	secretion protein HlyD
1243	 65.87	0	1382534..1383409	-	291	94313790	-	Rmet_4868	-	Alpha/beta hydrolase fold-3
1244	 63.97	0	1383782..1384708	+	308	94313791	-	Rmet_4869	-	LysR family transcriptional regulator
1245	 65.63	0	1384779..1386032	-	417	94313792	-	Rmet_4870	-	glutamate carboxypeptidase
1246	 67.68	+1	1386206..1387291	+	361	94313793	-	Rmet_4871	-	AraC family transcriptional regulator
1247	 64.22	0	1387320..1388135	-	271	94313794	-	Rmet_4872	-	transport-associated
1248	 67.37	+1	1388283..1388996	+	237	94313795	-	Rmet_4873	-	hypothetical protein
1249	 65.39	0	1389343..1390521	+	392	94313796	-	Rmet_4874	-	sodium/calcium exchanger membrane region
1250	 65.38	0	1390590..1391366	-	258	94313797	-	Rmet_4875	-	3-oxoadipate enol-lactonase
1251	 65.45	0	1391356..1392342	-	328	94313798	-	Rmet_4876	-	hypothetical protein
1252	 60.22	-1	1392373..1392651	-	92	94313799	-	Rmet_4877	-	muconolactone delta-isomerase
1253	 65.69	0	1392705..1393829	-	374	94313800	-	Rmet_4878	-	muconate cycloisomerase
1254	 66.10	0	1394002..1394877	+	291	94313801	-	Rmet_4879	-	LysR family transcriptional regulator
1255	 62.75	0	1394878..1395795	-	305	94313802	-	Rmet_4880	-	LysR family transcriptional regulator
1256	 67.21	0	1395969..1396892	+	307	94313803	-	Rmet_4881	-	catechol 1,2-dioxygenase
1257	 62.94	0	1397024..1398418	+	464	94313804	-	Rmet_4882	-	benzoate 1,2-dioxygenase, alpha subunit
1258	 58.59	-1	1398415..1398909	+	164	94313805	-	Rmet_4883	-	benzoate 1,2-dioxygenase, beta subunit
1259	 67.06	0	1398951..1399970	+	339	94313806	-	Rmet_4884	-	oxidoreductase FAD-binding region
1260	 66.54	0	1399970..1400764	+	264	94313807	benD	Rmet_4885	-	1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
1261	 66.41	0	1400849..1402000	-	383	94313808	-	Rmet_4886	-	hypothetical protein
1262	 63.37	0	1402110..1402685	-	191	94313809	-	Rmet_4887	-	TetR family transcriptional regulator
1263	 65.90	0	1402854..1404296	-	480	94313810	-	Rmet_4888	-	dihydrolipoamide dehydrogenase
1264	 61.34	0	1404436..1405167	-	243	94313811	-	Rmet_4889	-	glutaredoxin-like region
1265	 65.11	0	1405416..1407155	+	579	94313812	-	Rmet_4890	-	hypothetical protein
1266	 64.88	0	1407597..1408829	+	410	94313813	-	Rmet_4891	-	sulfite dehydrogenase (cytochrome) subunit SorA apoprotein
1267	 66.67	0	1408840..1409496	+	218	94313814	-	Rmet_4892	-	sulfite dehydrogenase (cytochrome) subunit SorB
1268	 62.50	0	1409507..1409986	-	159	94313815	-	Rmet_4893	-	hypothetical protein
1269	 65.59	0	1410110..1411876	-	588	94313816	-	Rmet_4894	-	cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase
1270	 63.80	0	1412204..1413736	+	510	94313817	-	Rmet_4895	-	acetyl-CoA hydrolase/transferase
1271	 60.88	0	1413761..1414555	-	264	94313818	-	Rmet_4896	-	SMC protein-like protein
1272	 63.89	0	1414715..1414822	+	35	94313819	-	Rmet_4897	-	hypothetical protein
1273	 64.86	0	1414932..1415873	+	313	94313820	-	Rmet_4898	-	patatin
1274	 63.50	0	1415947..1416483	+	178	94313821	-	Rmet_4899	-	hypothetical protein
1275	 61.95	0	1416612..1416929	+	105	94313822	-	Rmet_4900	-	XRE family transcriptional regulator
1276	 64.52	0	1416926..1418227	+	433	94313823	-	Rmet_4901	-	HipA-like protein
1277	 66.14	0	1418279..1419043	-	254	94313824	-	Rmet_4902	-	short-chain dehydrogenase/reductase SDR
1278	 67.83	+1	1419189..1419791	+	200	94313825	-	Rmet_4903	-	TetR family transcriptional regulator
1279	 66.28	0	1419833..1421140	+	435	94313826	-	Rmet_4904	-	major facilitator transporter
1280	 64.35	0	1421169..1422074	-	301	94313827	-	Rmet_4905	-	LysR family transcriptional regulator
1281	 63.83	0	1422156..1422578	+	140	94313828	-	Rmet_4906	-	glyoxalase/bleomycin resistance protein/dioxygenase
1282	 65.09	0	1422621..1423316	+	231	94313829	-	Rmet_4907	-	fumarylacetoacetate (FAA) hydrolase
1283	 67.87	+1	1423714..1424211	+	165	94313830	-	Rmet_4908	-	hypothetical protein
1284	 61.72	0	1424436..1425041	+	201	94313831	-	Rmet_4909	-	TetR family transcriptional regulator
1285	 62.68	0	1425067..1425918	-	283	94313832	-	Rmet_4910	-	exodeoxyribonuclease III
1286	 64.10	0	1426042..1426587	-	181	94313833	-	Rmet_4911	-	hypothetical protein
1287	 65.16	0	1426638..1427168	-	176	94313834	-	Rmet_4912	-	NosL
1288	 63.50	0	1427165..1427986	-	273	94313835	-	Rmet_4913	-	ABC-type transport system protein
1289	 65.83	0	1427986..1428936	-	316	94313836	-	Rmet_4914	-	ABC transporter related
1290	 63.69	0	1428914..1430191	-	425	94313837	-	Rmet_4915	-	periplasmic copper-binding
1291	 63.15	0	1430188..1432806	-	872	94313838	-	Rmet_4916	-	FMN-binding
1292	 60.95	0	1432862..1434802	-	646	94313839	-	Rmet_4917	-	nitrous-oxide reductase
1293	 67.39	+1	1435075..1435488	+	137	94313840	-	Rmet_4918	-	cytochrome c, class I
1294	 66.67	0	1435493..1436515	+	340	94313841	-	Rmet_4919	-	ApbE-like lipoprotein
1295	 61.02	0	1436750..1437652	+	300	94313842	-	Rmet_4920	-	phospholipid/glycerol acyltransferase
1296	 62.47	0	1437726..1438130	-	134	94313843	-	Rmet_4921	-	putative lipoprotein
1297	 62.15	0	1438209..1438496	-	95	94313844	-	Rmet_4922	-	hypothetical protein
1298	 66.67	0	1438772..1439098	+	108	94313845	-	Rmet_4923	-	thioredoxin-related
1299	 61.39	0	1439151..1439624	-	157	94313846	-	Rmet_4924	-	AsnC family transcriptional regulator
1300	 62.01	0	1439828..1440901	+	357	94313847	-	Rmet_4925	-	4-hydroxyphenylpyruvate dioxygenase
1301	 63.43	0	1441081..1442469	+	462	94313848	-	Rmet_4926	-	amino acid permease-associated region
1302	 66.67	0	1442527..1443723	+	398	94313849	-	Rmet_4927	-	aromatic amino acid aminotransferase
1303	 64.71	0	1443835..1445367	+	510	94313850	-	Rmet_4928	-	amino acid permease-associated region
1304	 61.72	0	1445465..1446172	+	235	94313851	-	Rmet_4929	-	glutathione S-transferase-like protein
1305	 68.63	+1	1446211..1447026	-	271	94313852	-	Rmet_4930	-	IclR family transcriptional regulator
1306	 64.65	0	1447146..1448138	+	330	94313853	-	Rmet_4931	-	hypothetical protein
1307	 65.22	0	1448170..1450512	+	780	94313854	-	Rmet_4932	-	ferredoxin
1308	 63.24	0	1450581..1451543	-	320	94313855	-	Rmet_4933	-	response regulator receiver (CheY-like) modulated CheW protein
1309	 66.96	0	1452036..1453418	+	460	94313856	-	Rmet_4934	-	xanthine/uracil/vitamin C permease
1310	 60.95	0	1453980..1454294	+	104	94313857	-	Rmet_4935	-	H-NS family DNA-binding protein
1311	 64.82	0	1454349..1455107	-	252	94313858	-	Rmet_4936	-	hypothetical protein
1312	 63.04	0	1455389..1456381	+	330	94313859	-	Rmet_4937	-	AsnC family transcriptional regulator
1313	 66.89	0	1456433..1456888	-	151	94313860	-	Rmet_4938	-	hypothetical protein
1314	 65.15	0	1456885..1457805	-	306	94313861	-	Rmet_4939	-	peptidase U32
1315	 66.96	0	1457839..1458867	-	342	94313862	-	Rmet_4940	-	peptidase U32
1316	 66.56	0	1458985..1459890	-	301	94313863	-	Rmet_4941	-	IclR family transcriptional regulator
1317	 66.39	0	1459974..1461422	+	482	94313864	-	Rmet_4942	-	succinate semialdehyde dehydrogenase
1318	 67.01	0	1461495..1462652	+	385	94313865	-	Rmet_4943	-	iron-containing alcohol dehydrogenase
1319	 65.96	0	1462949..1463230	+	93	94313866	-	Rmet_4944	-	hypothetical protein
1320	 64.52	0	1463212..1463676	-	154	94313867	-	Rmet_4945	-	PRC-barrel
1321	 65.22	0	1463930..1464688	-	252	94313868	-	Rmet_4946	-	citrate synthase
1322	 66.97	0	1464702..1465685	-	327	94313869	-	Rmet_4947	-	hypothetical protein
1323	 66.79	0	1465697..1466509	-	270	94313870	-	Rmet_4948	-	short-chain dehydrogenase/reductase SDR
1324	 65.01	0	1466525..1468090	-	521	94313871	-	Rmet_4949	-	acyl-CoA synthetase
1325	 66.96	0	1468229..1469254	+	341	94313872	-	Rmet_4950	-	LacI family transcription regulator
1326	 64.85	0	1469282..1470271	-	329	94313873	-	Rmet_4951	-	hypothetical protein
1327	 69.01	+1	1470299..1471108	-	269	94313874	-	Rmet_4952	-	short-chain dehydrogenase/reductase SDR
1328	 66.47	0	1471131..1472153	-	340	94313875	-	Rmet_4953	-	hypothetical protein
1329	 66.45	0	1472553..1473953	-	466	94313876	-	Rmet_4954	-	GntR family transcriptional regulator
1330	 62.90	0	1474133..1475566	+	477	94313877	-	Rmet_4955	-	cytochrome bd ubiquinol oxidase, subunit I
1331	 65.67	0	1475571..1476578	+	335	94313878	-	Rmet_4956	-	cytochrome d ubiquinol oxidase, subunit II
1332	 64.52	0	1476858..1477556	+	232	94313879	-	Rmet_4957	-	hypothetical protein
1333	 58.42	-1	1477794..1478885	-	363	94313880	-	Rmet_4958	-	fimbrial protein
1334	 63.06	0	1479072..1481675	-	867	94313881	-	Rmet_4959	-	fimbrial biogenesis outer membrane usher protein
1335	 62.84	0	1481790..1482494	-	234	94313882	-	Rmet_4960	-	pili assembly chaperone
1336	 63.24	0	1482623..1483177	-	184	94313883	-	Rmet_4961	-	fimbrial protein
1337	 61.76	0	1483479..1484375	-	298	94313884	-	Rmet_4962	-	diguanylate phosphodiesterase
1338	 63.88	0	1484588..1487956	-	1122	94313885	-	Rmet_4963	-	histidine kinase
1339	 63.24	0	1488210..1488881	-	223	94313886	-	Rmet_4964	-	two component LuxR family transcriptional regulator
1340	 62.17	0	1489159..1489803	-	214	94313887	-	Rmet_4965	-	two component LuxR family transcriptional regulator
63.77	MEAN

3.52	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.