IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.77   STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1033	 59.93	-1	1144141..1144437	+	98	94313580	-	Rmet_4658	-	transposase IS3/IS911
1034	 61.74	0	1144434..1145327	+	297	94313581	-	Rmet_4659	-	integrase catalytic subunit
1035	 56.27	-2	1145365..1145874	-	169	94313582	-	Rmet_4660	-	hypothetical protein
1036	 58.41	-1	1146392..1148245	-	617	94313583	-	Rmet_4661	-	sigma 70 (RpoD)
1037	 58.48	-1	1148242..1149402	-	386	94313584	-	Rmet_4662	-	hypothetical protein
1038	 57.48	-1	1149462..1150277	-	271	94313585	-	Rmet_4663	-	putative spermidine synthase protein
1039	 59.13	-1	1150307..1150558	-	83	94313586	-	Rmet_4664	-	HPrNtr
1040	 54.95	-2	1150677..1150898	+	73	94313587	-	Rmet_4665	-	helix-turn-helix protein, CopG
1041	 63.18	0	1150922..1151437	-	171	94313588	-	Rmet_4666	-	NADH ubiquinone oxidoreductase, 20 kDa subunit
1042	 64.60	0	1151437..1152981	-	514	94313589	-	Rmet_4667	-	NADH-ubiquinone oxidoreductase, chain 49kDa
1043	 61.44	0	1152986..1154440	-	484	94313590	-	Rmet_4668	-	hydrogenase 4 subunit F
1044	 57.73	-1	1154442..1155101	-	219	94313591	-	Rmet_4669	-	hydrogenase 4 membrane component
1045	 61.29	0	1155103..1156050	-	315	94313592	-	Rmet_4670	-	respiratory-chain NADH dehydrogenase, subunit 1
1046	 63.21	0	1156061..1158085	-	674	94313593	-	Rmet_4671	-	hydrogenase 4 subunit B
1047	 62.11	0	1158089..1158373	-	94	94313594	-	Rmet_4672	-	CopG-like DNA-binding
1048	 51.75	-2	1158871..1159299	+	142	94313595	-	Rmet_4673	-	hypothetical protein
1049	 55.62	-2	1159632..1160129	+	165	94313596	-	Rmet_4674	-	hypothetical protein
1050	 67.65	+1	1160402..1161214	-	270	94313597	-	Rmet_4675	-	hypothetical protein
1051	 67.56	+1	1161290..1162069	-	259	94313598	-	Rmet_4676	-	3-oxoadipate enol-lactonase
1052	 60.00	-1	1162085..1162369	-	94	94313599	-	Rmet_4677	-	muconolactone delta-isomerase
1053	 66.95	0	1162398..1163456	-	352	94313600	-	Rmet_4678	-	hypothetical protein
1054	 65.32	0	1163479..1163775	-	98	94313601	-	Rmet_4679	-	YciI-like protein
1055	 62.71	0	1163798..1165135	-	445	94313602	-	Rmet_4680	-	short chain fatty acid transporter
1056	 59.47	-1	1165264..1165527	+	87	94313603	-	Rmet_4681	-	hypothetical protein
1057	 62.00	0	1165520..1165990	-	156	94313604	-	Rmet_4682	-	DoxX
1058	 66.80	0	1166016..1166792	-	258	94313605	-	Rmet_4683	-	hypothetical protein
1059	 65.71	0	1166789..1167625	-	278	94313606	-	Rmet_4684	-	hypothetical protein
1060	 65.96	0	1167657..1167941	-	94	94313607	-	Rmet_4685	-	hypothetical protein
1061	 65.93	0	1168313..1168852	+	179	161621309	-	Rmet_4686	-	RNA polymerase sigma factor
1062	 67.76	+1	1168849..1169490	+	213	94313609	-	Rmet_4687	-	hypothetical protein
1063	 66.59	0	1169659..1173816	+	1385	94313610	-	Rmet_4688	-	hypothetical protein
1064	 67.69	+1	1173846..1178528	+	1560	94313611	-	Rmet_4689	-	hypothetical protein
1065	 67.52	+1	1178594..1179646	+	350	94313612	-	Rmet_4690	-	patatin
1066	 68.86	+1	1179650..1181107	+	485	94313613	-	Rmet_4691	-	citrate transporter
1067	 64.08	0	1181142..1181720	-	192	94313614	-	Rmet_4692	-	hypothetical protein
1068	 63.27	0	1181988..1182635	+	215	94313615	-	Rmet_4693	-	lytic transglycosylase, catalytic
1069	 64.95	0	1182720..1183595	-	291	94313616	-	Rmet_4694	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1070	 62.71	0	1183648..1184355	-	235	94313617	-	Rmet_4695	-	electron transport protein SCO1/SenC
1071	 66.85	0	1184403..1186028	-	541	94313618	-	Rmet_4696	-	hypothetical protein
1072	 66.55	0	1186025..1186873	-	282	94313619	-	Rmet_4697	-	hypothetical protein
1073	 66.28	0	1186889..1187668	-	259	94313620	-	Rmet_4698	-	putative signal peptide protein
1074	 64.42	0	1187717..1188205	-	162	94313621	-	Rmet_4699	-	putative transmembrane protein
1075	 63.95	0	1188218..1196314	-	2698	94313622	-	Rmet_4700	-	putative signal peptide protein
1076	 64.35	0	1196332..1197927	-	531	94313623	-	Rmet_4701	-	multicopper oxidase, type 3
1077	 62.24	0	1197974..1199488	-	504	94313624	-	Rmet_4702	-	multicopper oxidase, type 3
1078	 63.73	0	1199700..1200311	-	203	94313625	-	Rmet_4703	-	hypothetical protein
1079	 65.07	0	1200308..1200745	-	145	94313626	-	Rmet_4704	-	secretory pathway pseudopilin PulG
1080	 64.97	0	1200751..1201281	-	176	94313627	-	Rmet_4705	-	secretory pathway pseudopilin PulG
1081	 64.58	0	1201285..1203489	-	734	94313628	-	Rmet_4706	-	type II and III secretion system protein
1082	 66.67	0	1203490..1204098	-	202	94313629	-	Rmet_4707	-	hypothetical protein
1083	 64.37	0	1204095..1204661	-	188	94313630	-	Rmet_4708	-	putative transmembrane protein
1084	 63.65	0	1204658..1205188	-	176	94313631	-	Rmet_4709	-	putative transmembrane protein
1085	 64.26	0	1205185..1206099	-	304	94313632	-	Rmet_4710	-	putative signal peptide protein
1086	 64.97	0	1206080..1207786	-	568	94313633	-	Rmet_4711	-	type II secretion system protein E
1087	 64.01	0	1207793..1209034	-	413	94313634	-	Rmet_4712	-	type II secretion system protein
1088	 64.27	0	1209039..1209539	-	166	94313635	-	Rmet_4713	-	general secretion pathway protein G
1089	 62.43	0	1209646..1210989	+	447	94313636	-	Rmet_4714	-	putative PAS/PAC sensor protein
1090	 58.62	-1	1211030..1211824	-	264	94313637	-	Rmet_4715	-	two component LuxR family transcriptional regulator
1091	 62.86	0	1212434..1212880	-	148	94313638	-	Rmet_4716	-	hypothetical protein
1092	 66.32	0	1212941..1213522	-	193	94313639	-	Rmet_4717	-	hypothetical protein
1093	 68.65	+1	1213711..1214619	+	302	94313640	-	Rmet_4718	-	hypothetical protein
1094	 66.93	0	1214603..1215370	+	255	94313641	-	Rmet_4719	-	AraC family transcriptional regulator
1095	 63.40	0	1215451..1216551	+	366	94313642	-	Rmet_4720	-	hypothetical protein
1096	 62.21	0	1216850..1217275	+	141	94313643	-	Rmet_4721	-	hypothetical protein
1097	 63.76	0	1217557..1218072	-	171	94313644	-	Rmet_4722	-	putative lipoprotein
1098	 68.40	+1	1218305..1218997	-	230	94313645	-	Rmet_4723	-	TetR family transcriptional regulator
1099	 63.70	0	1219107..1220624	-	505	94313646	cls	Rmet_4724	-	cardiolipin synthetase
1100	 65.14	0	1220864..1221649	+	261	94313647	-	Rmet_4725	-	two component transcriptional regulator
1101	 63.47	0	1221670..1223700	-	676	94313648	-	Rmet_4726	-	diguanylate cyclase/phosphodiesterase
1102	 67.48	+1	1223803..1225407	+	534	94313649	-	Rmet_4727	-	methyl-accepting chemotaxis sensory transducer
1103	 60.23	-1	1225532..1225795	+	87	94313650	-	Rmet_4728	-	hypothetical protein
1104	 68.97	+1	1226130..1226780	+	216	94313651	-	Rmet_4729	-	hypothetical protein
1105	 62.83	0	1226926..1227603	-	225	94313652	-	Rmet_4730	-	hypothetical protein
1106	 66.21	0	1227612..1228481	+	289	94313653	-	Rmet_4731	-	AraC family transcriptional regulator
1107	 64.00	0	1228755..1229579	+	274	94313654	-	Rmet_4732	-	IclR family transcriptional regulator
1108	 63.22	0	1229611..1230045	+	144	94313655	-	Rmet_4733	-	5-carboxymethyl-2-hydroxymuconate isomerase
1109	 65.35	0	1230112..1231704	-	530	94313656	-	Rmet_4734	-	galactarate dehydratase
1110	 62.56	0	1231721..1233082	-	453	94313657	-	Rmet_4735	-	D-galactonate transporter
1111	 63.72	0	1233502..1234416	+	304	94313658	-	Rmet_4736	-	5-dehydro-4-deoxyglucarate dehydratase
1112	 61.67	0	1234559..1236139	-	526	94313659	-	Rmet_4737	-	isocitrate lyase
1113	 64.32	0	1236707..1237132	+	141	94313660	-	Rmet_4738	-	cupin 2, barrel
1114	 65.08	0	1237184..1237876	-	230	94313661	-	Rmet_4739	-	NnrU
1115	 63.71	0	1237964..1238470	+	168	94313662	-	Rmet_4740	-	GCN5-related N-acetyltransferase
1116	 63.14	0	1238710..1239702	+	330	94313663	-	Rmet_4741	-	2OG-Fe(II) oxygenase
1117	 60.03	-1	1239827..1240519	-	230	94313664	-	Rmet_4742	-	histone-like DNA-binding protein
1118	 63.65	0	1240557..1241054	-	165	94313665	-	Rmet_4743	-	hypothetical protein
1119	 67.01	0	1241197..1242075	+	292	94313666	-	Rmet_4744	-	N-acetyltransferase
1120	 63.40	0	1242265..1243029	+	254	94313667	-	Rmet_4745	-	short-chain dehydrogenase/reductase SDR
1121	 65.89	0	1243055..1244860	+	601	94313668	-	Rmet_4746	-	AMP-dependent synthetase and ligase
1122	 62.26	0	1244926..1245402	-	158	94313669	-	Rmet_4747	-	CreA
1123	 61.18	0	1245410..1245919	-	169	94313670	-	Rmet_4748	-	thioesterase superfamily protein
1124	 58.51	-1	1246050..1246331	-	93	94313671	-	Rmet_4749	-	HU family DNA-binding protein
1125	 63.09	0	1246883..1248085	+	400	94313672	-	Rmet_4750	-	Rh-like protein/ammonium transporter
1126	 61.01	0	1248327..1249193	+	288	94313673	-	Rmet_4751	-	MscS mechanosensitive ion channel
1127	 64.87	0	1249224..1250504	-	426	94313674	-	Rmet_4752	-	Bcr/CflA subfamily drug resistance transporter
1128	 65.04	0	1250615..1251289	+	224	94313675	-	Rmet_4753	-	hypothetical protein
1129	 65.17	0	1251539..1254010	-	823	94313676	-	Rmet_4754	-	glucosyltransferase MdoH
1130	 61.69	0	1254118..1255884	-	588	94313677	mdoG	Rmet_4755	-	glucan biosynthesis protein G
1131	 61.94	0	1256154..1256555	+	133	94313678	-	Rmet_4756	-	hypothetical protein
1132	 64.64	0	1256638..1257228	-	196	94313679	-	Rmet_4757	-	putative transmembrane protein
63.77	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.