IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.77   STD DEV: 3.52
Ralstonia metallidurans CH34 chromosome 2, complete sequence - 1..2580084
2313 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
984	 66.87	0	1088251..1089237	+	328	94313531	-	Rmet_4609	-	hypothetical protein
985	 64.97	0	1089283..1090638	+	451	94313532	-	Rmet_4610	-	hypothetical protein
986	 66.67	0	1090668..1091018	+	116	94313533	-	Rmet_4611	-	hypothetical protein
987	 70.51	+1	1090928..1091785	-	285	94313534	-	Rmet_4612	-	IclR family transcriptional regulator
988	 66.83	0	1091829..1093022	-	397	94313535	-	Rmet_4613	-	acyl-CoA dehydrogenase-like protein
989	 65.87	0	1093037..1093789	-	250	94313536	-	Rmet_4614	-	short-chain dehydrogenase/reductase SDR
990	 65.49	0	1093832..1094596	+	254	94313537	-	Rmet_4615	-	GntR family transcriptional regulator
991	 65.37	0	1094773..1095618	+	281	94313538	-	Rmet_4616	-	hypothetical protein
992	 63.61	0	1095946..1098171	+	741	94313539	-	Rmet_4617	-	TonB-dependent siderophore receptor
993	 65.15	0	1098225..1098620	-	131	94313540	-	Rmet_4618	-	hypothetical protein
994	 66.88	0	1098710..1100140	-	476	94313541	-	Rmet_4619	-	RND efflux system, outer membrane lipoprotein, NodT
995	 64.21	0	1100159..1101337	-	392	94313542	-	Rmet_4620	-	secretion protein HlyD
996	 61.58	0	1101338..1101730	-	130	94313543	-	Rmet_4621	-	hypothetical protein
997	 66.67	0	1102330..1102788	+	152	94313544	-	Rmet_4622	-	hypothetical protein
998	 67.47	+1	1102898..1103146	+	82	94313545	-	Rmet_4623	-	hypothetical protein
999	 64.88	0	1103179..1105416	+	745	94313546	-	Rmet_4624	-	twin-arginine translocation pathway signal
1000	 68.47	+1	1105475..1105972	-	165	94313547	-	Rmet_4625	-	hypothetical protein
1001	 66.19	0	1106301..1109252	-	983	94313548	-	Rmet_4626	-	Hpt sensor hybrid histidine kinase
1002	 62.83	0	1109249..1109899	-	216	94313549	-	Rmet_4627	-	two component LuxR family transcriptional regulator
1003	 65.62	0	1109958..1111196	+	412	94313550	-	Rmet_4628	-	zinc-binding alcohol dehydrogenase
1004	 66.94	0	1111314..1112405	+	363	94313551	-	Rmet_4629	-	AraC family transcriptional regulator
1005	 66.57	0	1112466..1113527	-	353	94313552	-	Rmet_4630	-	hypothetical protein
1006	 63.36	0	1113882..1114940	+	352	94313553	-	Rmet_4631	-	hypothetical protein
1007	 64.68	0	1115083..1116090	+	335	94313554	-	Rmet_4632	-	AraC family transcriptional regulator
1008	 61.45	0	1116135..1116977	-	280	94313555	-	Rmet_4633	-	taurine catabolism dioxygenase TauD/TfdA
1009	 63.31	0	1117297..1118190	+	297	94313556	-	Rmet_4634	-	DNA/RNA non-specific endonuclease
1010	 66.67	0	1118211..1119947	-	578	94313557	-	Rmet_4635	-	sulphate transporter
1011	 66.21	0	1119983..1120855	-	290	94313558	-	Rmet_4636	-	hypothetical protein
1012	 62.22	0	1121123..1121392	+	89	94313559	-	Rmet_4637	-	thiamineS
1013	 65.52	0	1121427..1122560	+	377	94313560	-	Rmet_4638	-	hypothetical protein
1014	 57.64	-1	1122645..1123043	+	132	94313561	-	Rmet_4639	-	glyoxalase/bleomycin resistance protein/dioxygenase
1015	 53.98	-2	1122980..1123570	-	196	94313562	-	Rmet_4640	-	hypothetical protein
1016	 55.61	-2	1123708..1125588	-	626	94313563	-	Rmet_4641	-	ATP-dependent OLD family endonuclease
1017	 53.67	-2	1125802..1126332	-	176	94313564	-	Rmet_4642	-	hypothetical protein
1018	 65.90	0	1126932..1127456	-	174	94313565	-	Rmet_4643	-	hypothetical protein
1019	 61.80	0	1127507..1128040	-	177	94313566	-	Rmet_4644	-	carboxymuconolactone decarboxylase
1020	 65.33	0	1128059..1129105	-	348	94313567	-	Rmet_4645	-	hypothetical protein
1021	 65.72	0	1129116..1130069	-	317	94313568	-	Rmet_4646	-	short-chain dehydrogenase/reductase SDR
1022	 64.90	0	1130081..1131100	+	339	94313569	-	Rmet_4647	-	LacI family transcription regulator
1023	 65.97	0	1131136..1132290	-	384	94313570	-	Rmet_4648	-	filamentation induced by cAMP protein Fic
1024	 66.06	0	1132446..1133933	-	495	94313571	-	Rmet_4649	-	RND efflux system, outer membrane lipoprotein, NodT
1025	 65.92	0	1134056..1134589	+	177	94313572	-	Rmet_4650	-	putative transcriptional regulator
1026	 67.28	0	1134613..1135755	+	380	94313573	-	Rmet_4651	-	secretion protein HlyD
1027	 62.67	0	1135863..1137389	+	508	94313574	-	Rmet_4652	-	EmrB/QacA family drug resistance transporter
1028	 65.00	0	1137708..1139390	+	560	94313575	-	Rmet_4653	-	amidohydrolase 3
1029	 60.07	-1	1139453..1139725	-	90	94313576	-	Rmet_4654	-	hypothetical protein
1030	 63.79	0	1139743..1141269	+	508	94313577	-	Rmet_4655	-	argininosuccinate lyase
1031	 54.86	-2	1141326..1141706	+	126	94313578	-	Rmet_4656	-	antibiotic biosynthesis monooxygenase
1032	 56.65	-2	1142022..1144067	-	681	94313579	-	Rmet_4657	-	diguanylate cyclase/phosphodiesterase
1033	 59.93	-1	1144141..1144437	+	98	94313580	-	Rmet_4658	-	transposase IS3/IS911
1034	 61.74	0	1144434..1145327	+	297	94313581	-	Rmet_4659	-	integrase catalytic subunit
1035	 56.27	-2	1145365..1145874	-	169	94313582	-	Rmet_4660	-	hypothetical protein
1036	 58.41	-1	1146392..1148245	-	617	94313583	-	Rmet_4661	-	sigma 70 (RpoD)
1037	 58.48	-1	1148242..1149402	-	386	94313584	-	Rmet_4662	-	hypothetical protein
1038	 57.48	-1	1149462..1150277	-	271	94313585	-	Rmet_4663	-	putative spermidine synthase protein
1039	 59.13	-1	1150307..1150558	-	83	94313586	-	Rmet_4664	-	HPrNtr
1040	 54.95	-2	1150677..1150898	+	73	94313587	-	Rmet_4665	-	helix-turn-helix protein, CopG
1041	 63.18	0	1150922..1151437	-	171	94313588	-	Rmet_4666	-	NADH ubiquinone oxidoreductase, 20 kDa subunit
1042	 64.60	0	1151437..1152981	-	514	94313589	-	Rmet_4667	-	NADH-ubiquinone oxidoreductase, chain 49kDa
1043	 61.44	0	1152986..1154440	-	484	94313590	-	Rmet_4668	-	hydrogenase 4 subunit F
1044	 57.73	-1	1154442..1155101	-	219	94313591	-	Rmet_4669	-	hydrogenase 4 membrane component
1045	 61.29	0	1155103..1156050	-	315	94313592	-	Rmet_4670	-	respiratory-chain NADH dehydrogenase, subunit 1
1046	 63.21	0	1156061..1158085	-	674	94313593	-	Rmet_4671	-	hydrogenase 4 subunit B
1047	 62.11	0	1158089..1158373	-	94	94313594	-	Rmet_4672	-	CopG-like DNA-binding
1048	 51.75	-2	1158871..1159299	+	142	94313595	-	Rmet_4673	-	hypothetical protein
1049	 55.62	-2	1159632..1160129	+	165	94313596	-	Rmet_4674	-	hypothetical protein
1050	 67.65	+1	1160402..1161214	-	270	94313597	-	Rmet_4675	-	hypothetical protein
1051	 67.56	+1	1161290..1162069	-	259	94313598	-	Rmet_4676	-	3-oxoadipate enol-lactonase
1052	 60.00	-1	1162085..1162369	-	94	94313599	-	Rmet_4677	-	muconolactone delta-isomerase
1053	 66.95	0	1162398..1163456	-	352	94313600	-	Rmet_4678	-	hypothetical protein
1054	 65.32	0	1163479..1163775	-	98	94313601	-	Rmet_4679	-	YciI-like protein
1055	 62.71	0	1163798..1165135	-	445	94313602	-	Rmet_4680	-	short chain fatty acid transporter
1056	 59.47	-1	1165264..1165527	+	87	94313603	-	Rmet_4681	-	hypothetical protein
1057	 62.00	0	1165520..1165990	-	156	94313604	-	Rmet_4682	-	DoxX
1058	 66.80	0	1166016..1166792	-	258	94313605	-	Rmet_4683	-	hypothetical protein
1059	 65.71	0	1166789..1167625	-	278	94313606	-	Rmet_4684	-	hypothetical protein
1060	 65.96	0	1167657..1167941	-	94	94313607	-	Rmet_4685	-	hypothetical protein
1061	 65.93	0	1168313..1168852	+	179	161621309	-	Rmet_4686	-	RNA polymerase sigma factor
1062	 67.76	+1	1168849..1169490	+	213	94313609	-	Rmet_4687	-	hypothetical protein
1063	 66.59	0	1169659..1173816	+	1385	94313610	-	Rmet_4688	-	hypothetical protein
1064	 67.69	+1	1173846..1178528	+	1560	94313611	-	Rmet_4689	-	hypothetical protein
1065	 67.52	+1	1178594..1179646	+	350	94313612	-	Rmet_4690	-	patatin
1066	 68.86	+1	1179650..1181107	+	485	94313613	-	Rmet_4691	-	citrate transporter
1067	 64.08	0	1181142..1181720	-	192	94313614	-	Rmet_4692	-	hypothetical protein
1068	 63.27	0	1181988..1182635	+	215	94313615	-	Rmet_4693	-	lytic transglycosylase, catalytic
1069	 64.95	0	1182720..1183595	-	291	94313616	-	Rmet_4694	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1070	 62.71	0	1183648..1184355	-	235	94313617	-	Rmet_4695	-	electron transport protein SCO1/SenC
1071	 66.85	0	1184403..1186028	-	541	94313618	-	Rmet_4696	-	hypothetical protein
1072	 66.55	0	1186025..1186873	-	282	94313619	-	Rmet_4697	-	hypothetical protein
1073	 66.28	0	1186889..1187668	-	259	94313620	-	Rmet_4698	-	putative signal peptide protein
1074	 64.42	0	1187717..1188205	-	162	94313621	-	Rmet_4699	-	putative transmembrane protein
1075	 63.95	0	1188218..1196314	-	2698	94313622	-	Rmet_4700	-	putative signal peptide protein
1076	 64.35	0	1196332..1197927	-	531	94313623	-	Rmet_4701	-	multicopper oxidase, type 3
1077	 62.24	0	1197974..1199488	-	504	94313624	-	Rmet_4702	-	multicopper oxidase, type 3
1078	 63.73	0	1199700..1200311	-	203	94313625	-	Rmet_4703	-	hypothetical protein
1079	 65.07	0	1200308..1200745	-	145	94313626	-	Rmet_4704	-	secretory pathway pseudopilin PulG
1080	 64.97	0	1200751..1201281	-	176	94313627	-	Rmet_4705	-	secretory pathway pseudopilin PulG
1081	 64.58	0	1201285..1203489	-	734	94313628	-	Rmet_4706	-	type II and III secretion system protein
1082	 66.67	0	1203490..1204098	-	202	94313629	-	Rmet_4707	-	hypothetical protein
1083	 64.37	0	1204095..1204661	-	188	94313630	-	Rmet_4708	-	putative transmembrane protein
63.77	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.