IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
929	 53.03	0	833884..834213	+	109	119872449	-	Pisl_0937	-	hypothetical protein
930	 44.79	0	834530..835891	+	453	119872450	-	Pisl_0938	-	geranylgeranyl reductase
931	 44.62	0	835892..836449	+	185	119872451	-	Pisl_0939	-	class II aldolase/adducin family protein
932	 44.97	0	836446..837081	+	211	119872452	-	Pisl_0940	-	hypothetical protein
933	 44.13	0	837078..838448	+	456	119872453	-	Pisl_0941	-	AAA ATPase
934	 40.98	-1	838451..839614	+	387	119872454	-	Pisl_0942	-	hypothetical protein
935	 41.90	0	839601..840137	-	178	119872455	-	Pisl_0943	-	hypothetical protein
936	 42.34	0	840182..841147	-	321	119872456	-	Pisl_0944	-	hypothetical protein
937	 44.41	0	841149..842042	-	297	119872457	-	Pisl_0945	-	iron-sulfur cluster loop
938	 44.09	0	842089..842469	+	126	119872458	-	Pisl_0946	-	hypothetical protein
939	 40.07	-1	842498..842779	+	93	119872459	-	Pisl_0947	-	MoaD family protein
940	 46.03	0	842754..843194	-	146	119872460	-	Pisl_0948	-	hypothetical protein
941	 39.87	-1	843226..843378	+	50	119872461	-	Pisl_0949	-	CopG/Arc/MetJ family transcriptional regulator
942	 47.17	0	843375..844241	-	288	119872462	-	Pisl_0950	-	tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit
943	 45.28	0	844317..844952	+	211	119872463	-	Pisl_0951	-	tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit
944	 42.24	0	844981..847731	+	916	119872464	-	Pisl_0952	-	DEAD/DEAH box helicase domain-containing protein
945	 39.35	-1	847733..848164	-	143	119872465	-	Pisl_0953	-	like-Sm ribonucleoprotein, core
946	 33.02	-2	848195..848509	-	104	119872466	-	Pisl_0954	-	hypothetical protein
947	 33.55	-2	848634..849101	+	155	119872467	-	Pisl_0955	-	zinc finger TFIIB-type domain-containing protein
948	 34.60	-1	849082..850110	+	342	119872468	-	Pisl_0956	-	type II secretion system protein E
949	 32.42	-2	850100..850645	+	181	119872469	-	Pisl_0957	-	hypothetical protein
950	 44.98	0	851089..852753	-	554	119872470	-	Pisl_0958	-	thermosome
951	 42.12	0	852810..853685	-	291	119872471	-	Pisl_0959	-	methionine aminopeptidase
952	 41.38	-1	853759..854976	+	405	119872472	-	Pisl_0960	-	DNA primase
953	 46.73	0	854981..857338	-	785	119872473	-	Pisl_0961	-	DNA polymerase II
954	 37.89	-1	857478..857828	+	116	119872474	-	Pisl_0962	-	hypothetical protein
955	 47.35	0	858591..859061	+	156	119872475	rpl15p	Pisl_0963	-	50S ribosomal protein L15P
956	 44.25	0	859062..860444	+	460	119872476	-	Pisl_0964	-	preprotein translocase subunit SecY
957	 37.59	-1	860474..860614	+	46	119872477	-	Pisl_0965	-	hypothetical protein
958	 45.96	0	860611..861402	+	263	119872478	-	Pisl_0966	-	hypothetical protein
959	 41.26	-1	861399..862622	-	407	119872479	-	Pisl_0967	-	nucleotidyl transferase
960	 47.34	0	862667..864115	-	482	119872480	-	Pisl_0968	-	starch synthase
961	 48.33	0	864117..865490	-	457	119872481	-	Pisl_0969	-	Alpha-amylase
962	 46.25	0	865525..867429	+	634	119872482	-	Pisl_0970	-	aldehyde ferredoxin oxidoreductase
963	 42.75	0	867456..868910	+	484	119872483	-	Pisl_0971	-	glycosyl transferase, group 1
964	 46.58	0	868938..870356	+	472	119872484	-	Pisl_0972	-	thiamine biosynthesis protein ThiI
965	 41.69	-1	870907..871851	+	314	119872485	-	Pisl_0973	-	putative mRNA 3-end processing factor
966	 62.96	+1	872050..872157	+	35	119872486	-	Pisl_0974	-	hypothetical protein
967	 45.34	0	872399..873697	+	432	119872487	-	Pisl_0975	-	basic membrane lipoprotein
968	 42.10	0	873701..875092	+	463	119872488	-	Pisl_0976	-	ABC transporter related
969	 46.42	0	875089..876051	+	320	119872489	-	Pisl_0977	-	inner-membrane translocator
970	 45.26	0	876042..876896	+	284	119872490	-	Pisl_0978	-	inner-membrane translocator
971	 44.41	0	876939..877886	-	315	119872491	-	Pisl_0979	-	ROK family protein
972	 46.31	0	877954..879240	+	428	119872492	-	Pisl_0980	-	Glu/Leu/Phe/Val dehydrogenase, C terminal
973	 44.60	0	880118..880960	-	280	119872493	-	Pisl_0982	-	hypothetical protein
974	 37.62	-1	880976..881185	-	69	119872494	-	Pisl_0983	-	hypothetical protein
975	 45.69	0	881274..882074	-	266	119872495	-	Pisl_0984	-	molybdopterin-guanine dinucleotide biosynthesis protein A
976	 44.05	0	882100..885084	+	994	119872496	-	Pisl_0985	-	glycoside hydrolase family protein
977	 43.56	0	885115..886464	+	449	119872497	-	Pisl_0986	-	extracellular solute-binding protein
978	 40.91	-1	886464..887387	+	307	119872498	-	Pisl_0987	-	binding-protein-dependent transport systems inner membrane component
979	 42.26	0	887377..888183	+	268	119872499	-	Pisl_0988	-	binding-protein-dependent transport systems inner membrane component
980	 42.34	0	888189..889232	-	347	119872500	-	Pisl_0989	-	peptidase M48, Ste24p
981	 41.83	0	889365..889670	+	101	119872501	-	Pisl_0990	-	hypothetical protein
982	 45.04	0	889667..891580	+	637	119872502	-	Pisl_0991	-	molybdenum cofactor synthesis domain-containing protein
983	 46.81	0	891840..893078	-	412	119872503	-	Pisl_0992	-	molybdenum cofactor synthesis domain-containing protein
984	 45.22	0	893133..894125	+	330	119872504	-	Pisl_0993	-	hypothetical protein
985	 48.48	0	894114..894773	-	219	119872505	-	Pisl_0994	-	hypothetical protein
986	 34.88	-1	894773..895030	-	85	119872506	-	Pisl_0995	-	AsnC family transcriptional regulator
987	 41.33	-1	895060..895359	-	99	119872507	-	Pisl_0996	-	hypothetical protein
988	 42.46	0	895450..895953	-	167	119872508	-	Pisl_0997	-	AsnC family transcriptional regulator
989	 40.67	-1	896033..896782	-	249	119872509	-	Pisl_0998	-	hypothetical protein
990	 41.13	-1	896782..897294	-	170	119872510	-	Pisl_0999	-	hypothetical protein
991	 39.39	-1	897284..900124	-	946	119872511	-	Pisl_1000	-	hypothetical protein
992	 39.18	-1	900170..900682	+	170	119872512	-	Pisl_1001	-	ribosomal-protein-alanine acetyltransferase
993	 36.58	-1	900957..901541	+	194	119872513	-	Pisl_1002	-	hypothetical protein
994	 40.16	-1	902883..903131	-	82	119872514	-	Pisl_1004	-	hypothetical protein
995	 44.89	0	903156..903821	+	221	119872515	-	Pisl_1005	-	AMMECR1 domain-containing protein
996	 43.00	0	903781..904266	-	161	119872516	-	Pisl_1006	-	hypothetical protein
997	 60.51	+1	904588..904863	+	91	119872517	-	Pisl_1007	-	hypothetical protein
998	 37.30	-1	904931..905662	-	243	119872518	-	Pisl_1008	-	transcriptional regulator, TrmB
999	 46.17	0	905740..907461	+	573	119872519	-	Pisl_1009	-	radical SAM domain-containing protein
1000	 55.21	0	907711..909561	-	616	119872520	-	Pisl_1010	-	hypothetical protein
1001	 56.34	+1	909558..910322	-	254	119872521	-	Pisl_1011	-	ABC transporter related
1002	 56.55	+1	910313..911449	-	378	119872522	-	Pisl_1012	-	hypothetical protein
1003	 55.21	0	911491..914073	+	860	119872523	-	Pisl_1013	-	hypothetical protein
1004	 42.17	0	914149..914397	+	82	119872524	-	Pisl_1014	-	hypothetical protein
1005	 40.20	-1	914394..915005	+	203	119872525	-	Pisl_1015	-	hydrolase
1006	 40.09	-1	915030..915251	+	73	119872526	-	Pisl_1016	-	hypothetical protein
1007	 42.20	0	915336..916328	+	330	119872527	-	Pisl_1017	-	PP-loop domain-containing protein
1008	 43.77	0	916311..916904	-	197	119872528	-	Pisl_1018	-	amino acid-binding ACT domain-containing protein
1009	 53.42	0	917039..919438	+	799	119872529	valS	Pisl_1019	-	valyl-tRNA synthetase
1010	 44.79	0	919430..921664	-	744	119872530	-	Pisl_1020	-	DEAD/DEAH box helicase domain-containing protein
1011	 43.12	0	921661..922743	-	360	119872531	-	Pisl_1021	-	major facilitator transporter
1012	 46.06	0	922740..923234	-	164	119872532	-	Pisl_1022	-	hypothetical protein
1013	 40.05	-1	923309..923710	+	133	119872533	-	Pisl_1023	-	ferric uptake regulator family protein
1014	 44.97	0	923999..925210	+	403	119872534	-	Pisl_1024	-	FAD dependent oxidoreductase
1015	 38.10	-1	925207..925374	+	55	119872535	-	Pisl_1025	-	hypothetical protein
1016	 43.43	0	925430..926578	+	382	119872536	-	Pisl_1026	-	succinyl-CoA synthetase, beta subunit
1017	 46.94	0	926575..927456	+	293	119872537	-	Pisl_1027	-	succinyl-CoA synthetase, alpha subunit
1018	 43.92	0	927761..928960	+	399	119872538	-	Pisl_1028	-	GntR family transcriptional regulator
1019	 43.59	0	928957..930165	+	402	119872539	-	Pisl_1029	-	threonine dehydratase
1020	 48.11	0	930149..930439	-	96	119872540	-	Pisl_1030	-	transposase, IS605 OrfB
1021	 50.99	0	930467..930970	-	167	119872541	-	Pisl_1031	-	hypothetical protein
1022	 59.26	+1	931095..931364	-	89	119872542	-	Pisl_1032	-	hypothetical protein
1023	 54.04	0	931388..932710	+	440	119872543	-	Pisl_1033	-	transposase, IS605 OrfB
1024	 44.91	0	933351..934067	+	238	119872544	-	Pisl_1034	-	threonyl/alanyl tRNA synthetase, SAD
1025	 41.17	-1	934067..935572	+	501	119872545	-	Pisl_1035	-	sodium/hydrogen exchanger
1026	 43.49	0	935585..936106	-	173	119872546	-	Pisl_1036	-	hypothetical protein
1027	 38.99	-1	936197..937204	+	335	119872547	-	Pisl_1037	-	hypothetical protein
1028	 41.36	-1	937194..938015	-	273	119872548	-	Pisl_1038	-	metal dependent phosphohydrolase
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.