IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
886	 46.15	0	797747..798097	-	116	119872406	-	Pisl_0894	-	hypothetical protein
887	 44.99	0	798969..800726	-	585	119872407	-	Pisl_0895	-	glycyl-tRNA synthetase
888	 43.73	0	800816..801700	+	294	119872408	-	Pisl_0896	-	cation diffusion facilitator family transporter
889	 45.85	0	801693..802499	+	268	119872409	-	Pisl_0897	-	putative agmatinase
890	 48.06	0	802596..803111	+	171	119872410	-	Pisl_0898	-	cytidyltransferase-like protein
891	 42.94	0	803101..803277	+	58	119872411	rpoP	Pisl_0899	-	DNA-directed RNA polymerase subunit P
892	 51.28	0	803277..803510	+	77	119872412	-	Pisl_0900	-	hypothetical protein
893	 47.88	0	803505..804281	-	258	119872413	-	Pisl_0901	-	ABC-2 type transport system, membrane protein
894	 51.37	0	804271..805035	-	254	119872414	-	Pisl_0902	-	ABC-2 type transporter
895	 49.56	0	805032..805943	-	303	119872415	-	Pisl_0903	-	ABC transporter related
896	 46.13	0	806427..807020	+	197	119872416	-	Pisl_0904	-	HAD family hydrolase
897	 42.22	0	807153..807872	-	239	119872417	-	Pisl_0905	-	hypothetical protein
898	 45.48	0	807908..808261	+	117	119872418	-	Pisl_0906	-	hypothetical protein
899	 45.71	0	808297..808506	+	69	119872419	-	Pisl_0907	-	hypothetical protein
900	 50.78	0	808503..809402	-	299	119872420	-	Pisl_0908	-	peptidase T2, asparaginase 2
901	 44.79	0	809399..809878	-	159	119872421	rps4p	Pisl_0909	-	30S ribosomal protein S4
902	 45.89	0	809912..810373	-	153	119872422	rps13p	Pisl_0910	-	30S ribosomal protein S13P
903	 41.86	0	810402..811820	-	472	119872423	-	Pisl_0911	-	binding-protein-dependent transport systems inner membrane component
904	 44.35	0	811817..812887	-	356	119872424	-	Pisl_0912	-	binding-protein-dependent transport systems inner membrane component
905	 49.79	0	812937..815543	-	868	119872425	-	Pisl_0913	-	cell wall anchor domain-containing protein
906	 36.95	-1	815547..815795	-	82	119872426	-	Pisl_0914	-	hypothetical protein
907	 48.75	0	815773..816933	-	386	119872427	-	Pisl_0915	-	pullulanase
908	 40.68	-1	817210..817944	-	244	119872428	-	Pisl_0916	-	hypothetical protein
909	 49.91	0	817919..818467	-	182	119872429	rpl10e	Pisl_0917	-	50S ribosomal protein L10e
910	 41.79	0	818512..818901	-	129	119872430	nac	Pisl_0918	-	nascent polypeptide-associated complex protein
911	 51.62	0	818898..821576	-	892	119872431	alaS	Pisl_0919	-	alanyl-tRNA synthetase
912	 40.51	-1	821620..822009	+	129	119872432	-	Pisl_0920	-	hypothetical protein
913	 47.75	0	821982..822203	-	73	119872433	-	Pisl_0921	-	DNA-directed RNA polymerase subunit E, RpoE2
914	 45.24	0	822200..822787	-	195	119872434	-	Pisl_0922	-	DNA-directed RNA polymerase subunit E'
915	 42.98	0	822809..823150	-	113	119872435	-	Pisl_0923	-	PilT domain-containing protein
916	 44.25	0	823147..824190	-	347	119872436	-	Pisl_0924	-	hypothetical protein
917	 46.41	0	824187..824645	-	152	119872437	-	Pisl_0925	-	histidine triad (HIT) protein
918	 39.71	-1	824669..824872	-	67	119872438	-	Pisl_0926	-	hypothetical protein
919	 44.88	0	824960..825652	+	230	119872439	-	Pisl_0927	-	hypothetical protein
920	 47.41	0	825660..826739	+	359	119872440	-	Pisl_0928	-	nucleotidyl transferase
921	 47.52	0	826731..827456	-	241	119872441	-	Pisl_0929	-	photosystem I assembly BtpA
922	 42.13	0	827657..828088	+	143	119872442	-	Pisl_0930	-	hypothetical protein
923	 39.62	-1	828204..828569	-	121	119872443	-	Pisl_0931	-	hypothetical protein
924	 39.84	-1	828553..829443	-	296	119872444	-	Pisl_0932	-	peptidase M48, Ste24p
925	 36.29	-1	829479..829850	-	123	119872445	-	Pisl_0933	-	hypothetical protein
926	 38.63	-1	830140..831348	-	402	119872446	-	Pisl_0934	-	helicase c2
927	 34.22	-2	831363..831701	-	112	119872447	-	Pisl_0935	-	hypothetical protein
928	 45.01	0	831714..832475	-	253	119872448	-	Pisl_0936	-	stationary-phase survival protein SurE
929	 53.03	0	833884..834213	+	109	119872449	-	Pisl_0937	-	hypothetical protein
930	 44.79	0	834530..835891	+	453	119872450	-	Pisl_0938	-	geranylgeranyl reductase
931	 44.62	0	835892..836449	+	185	119872451	-	Pisl_0939	-	class II aldolase/adducin family protein
932	 44.97	0	836446..837081	+	211	119872452	-	Pisl_0940	-	hypothetical protein
933	 44.13	0	837078..838448	+	456	119872453	-	Pisl_0941	-	AAA ATPase
934	 40.98	-1	838451..839614	+	387	119872454	-	Pisl_0942	-	hypothetical protein
935	 41.90	0	839601..840137	-	178	119872455	-	Pisl_0943	-	hypothetical protein
936	 42.34	0	840182..841147	-	321	119872456	-	Pisl_0944	-	hypothetical protein
937	 44.41	0	841149..842042	-	297	119872457	-	Pisl_0945	-	iron-sulfur cluster loop
938	 44.09	0	842089..842469	+	126	119872458	-	Pisl_0946	-	hypothetical protein
939	 40.07	-1	842498..842779	+	93	119872459	-	Pisl_0947	-	MoaD family protein
940	 46.03	0	842754..843194	-	146	119872460	-	Pisl_0948	-	hypothetical protein
941	 39.87	-1	843226..843378	+	50	119872461	-	Pisl_0949	-	CopG/Arc/MetJ family transcriptional regulator
942	 47.17	0	843375..844241	-	288	119872462	-	Pisl_0950	-	tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit
943	 45.28	0	844317..844952	+	211	119872463	-	Pisl_0951	-	tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit
944	 42.24	0	844981..847731	+	916	119872464	-	Pisl_0952	-	DEAD/DEAH box helicase domain-containing protein
945	 39.35	-1	847733..848164	-	143	119872465	-	Pisl_0953	-	like-Sm ribonucleoprotein, core
946	 33.02	-2	848195..848509	-	104	119872466	-	Pisl_0954	-	hypothetical protein
947	 33.55	-2	848634..849101	+	155	119872467	-	Pisl_0955	-	zinc finger TFIIB-type domain-containing protein
948	 34.60	-1	849082..850110	+	342	119872468	-	Pisl_0956	-	type II secretion system protein E
949	 32.42	-2	850100..850645	+	181	119872469	-	Pisl_0957	-	hypothetical protein
950	 44.98	0	851089..852753	-	554	119872470	-	Pisl_0958	-	thermosome
951	 42.12	0	852810..853685	-	291	119872471	-	Pisl_0959	-	methionine aminopeptidase
952	 41.38	-1	853759..854976	+	405	119872472	-	Pisl_0960	-	DNA primase
953	 46.73	0	854981..857338	-	785	119872473	-	Pisl_0961	-	DNA polymerase II
954	 37.89	-1	857478..857828	+	116	119872474	-	Pisl_0962	-	hypothetical protein
955	 47.35	0	858591..859061	+	156	119872475	rpl15p	Pisl_0963	-	50S ribosomal protein L15P
956	 44.25	0	859062..860444	+	460	119872476	-	Pisl_0964	-	preprotein translocase subunit SecY
957	 37.59	-1	860474..860614	+	46	119872477	-	Pisl_0965	-	hypothetical protein
958	 45.96	0	860611..861402	+	263	119872478	-	Pisl_0966	-	hypothetical protein
959	 41.26	-1	861399..862622	-	407	119872479	-	Pisl_0967	-	nucleotidyl transferase
960	 47.34	0	862667..864115	-	482	119872480	-	Pisl_0968	-	starch synthase
961	 48.33	0	864117..865490	-	457	119872481	-	Pisl_0969	-	Alpha-amylase
962	 46.25	0	865525..867429	+	634	119872482	-	Pisl_0970	-	aldehyde ferredoxin oxidoreductase
963	 42.75	0	867456..868910	+	484	119872483	-	Pisl_0971	-	glycosyl transferase, group 1
964	 46.58	0	868938..870356	+	472	119872484	-	Pisl_0972	-	thiamine biosynthesis protein ThiI
965	 41.69	-1	870907..871851	+	314	119872485	-	Pisl_0973	-	putative mRNA 3-end processing factor
966	 62.96	+1	872050..872157	+	35	119872486	-	Pisl_0974	-	hypothetical protein
967	 45.34	0	872399..873697	+	432	119872487	-	Pisl_0975	-	basic membrane lipoprotein
968	 42.10	0	873701..875092	+	463	119872488	-	Pisl_0976	-	ABC transporter related
969	 46.42	0	875089..876051	+	320	119872489	-	Pisl_0977	-	inner-membrane translocator
970	 45.26	0	876042..876896	+	284	119872490	-	Pisl_0978	-	inner-membrane translocator
971	 44.41	0	876939..877886	-	315	119872491	-	Pisl_0979	-	ROK family protein
972	 46.31	0	877954..879240	+	428	119872492	-	Pisl_0980	-	Glu/Leu/Phe/Val dehydrogenase, C terminal
973	 44.60	0	880118..880960	-	280	119872493	-	Pisl_0982	-	hypothetical protein
974	 37.62	-1	880976..881185	-	69	119872494	-	Pisl_0983	-	hypothetical protein
975	 45.69	0	881274..882074	-	266	119872495	-	Pisl_0984	-	molybdopterin-guanine dinucleotide biosynthesis protein A
976	 44.05	0	882100..885084	+	994	119872496	-	Pisl_0985	-	glycoside hydrolase family protein
977	 43.56	0	885115..886464	+	449	119872497	-	Pisl_0986	-	extracellular solute-binding protein
978	 40.91	-1	886464..887387	+	307	119872498	-	Pisl_0987	-	binding-protein-dependent transport systems inner membrane component
979	 42.26	0	887377..888183	+	268	119872499	-	Pisl_0988	-	binding-protein-dependent transport systems inner membrane component
980	 42.34	0	888189..889232	-	347	119872500	-	Pisl_0989	-	peptidase M48, Ste24p
981	 41.83	0	889365..889670	+	101	119872501	-	Pisl_0990	-	hypothetical protein
982	 45.04	0	889667..891580	+	637	119872502	-	Pisl_0991	-	molybdenum cofactor synthesis domain-containing protein
983	 46.81	0	891840..893078	-	412	119872503	-	Pisl_0992	-	molybdenum cofactor synthesis domain-containing protein
984	 45.22	0	893133..894125	+	330	119872504	-	Pisl_0993	-	hypothetical protein
985	 48.48	0	894114..894773	-	219	119872505	-	Pisl_0994	-	hypothetical protein
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.