IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
844	 40.48	-1	763431..764480	+	349	119872364	-	Pisl_0852	-	DNA primase large subunit
845	 40.56	-1	764801..765589	+	262	119872365	-	Pisl_0853	-	N-glycosylase/DNA lyase
846	 48.29	0	765793..766173	-	126	119872366	-	Pisl_0854	-	hypothetical protein
847	 51.07	0	766749..767870	-	373	119872367	-	Pisl_0855	-	hypothetical protein
848	 45.73	0	767902..769176	-	424	119872368	-	Pisl_0856	-	UbiD family decarboxylase
849	 44.80	0	769209..769487	-	92	119872369	-	Pisl_0857	-	chromatin protein
850	 41.87	0	769623..770372	+	249	119872370	-	Pisl_0858	-	HxlR family transcriptional regulator
851	 41.57	-1	770372..770869	+	165	119872371	-	Pisl_0859	-	hypothetical protein
852	 45.20	0	770832..771851	-	339	119872372	-	Pisl_0860	-	phosphate uptake regulator, PhoU
853	 42.30	0	771982..773085	-	367	119872373	-	Pisl_0861	-	DNA topoisomerase VI subunit A
854	 57.29	+1	773461..773844	-	127	119872374	-	Pisl_0862	-	hypothetical protein
855	 48.70	0	773962..774345	+	127	119872375	-	Pisl_0863	-	hypothetical protein
856	 44.39	0	774327..774986	+	219	119872376	-	Pisl_0864	-	hypothetical protein
857	 40.03	-1	774991..775587	+	198	119872377	-	Pisl_0865	-	hypothetical protein
858	 35.00	-1	775580..775879	+	99	119872378	-	Pisl_0866	-	hypothetical protein
859	 39.57	-1	775876..776580	+	234	119872379	-	Pisl_0867	-	hypothetical protein
860	 42.79	0	776577..778109	+	510	119872380	-	Pisl_0868	-	type II secretion system protein, conjectural
861	 39.36	-1	778140..778388	+	82	119872381	-	Pisl_0869	-	hypothetical protein
862	 41.44	-1	778385..778717	+	110	119872382	-	Pisl_0870	-	hypothetical protein
863	 41.69	-1	778747..779943	+	398	119872383	-	Pisl_0871	-	hypothetical protein
864	 45.75	0	779974..780432	+	152	119872384	-	Pisl_0872	-	hypothetical protein
865	 39.14	-1	780463..781392	+	309	119872385	-	Pisl_0873	-	hypothetical protein
866	 44.52	0	781397..781834	+	145	119872386	-	Pisl_0874	-	hypothetical protein
867	 42.40	0	781836..782177	+	113	119872387	-	Pisl_0875	-	hypothetical protein
868	 38.30	-1	782179..782862	+	227	119872388	-	Pisl_0876	-	hypothetical protein
869	 43.37	0	782892..785891	+	999	119872389	-	Pisl_0877	-	hypothetical protein
870	 41.32	-1	785885..786385	+	166	119872390	-	Pisl_0878	-	hypothetical protein
871	 44.07	0	786415..786684	+	89	119872391	-	Pisl_0879	-	hypothetical protein
872	 38.33	-1	786678..786977	+	99	119872392	-	Pisl_0880	-	hypothetical protein
873	 44.27	0	787455..788615	-	386	119872393	-	Pisl_0881	-	cystathionine gamma-synthase
874	 40.48	-1	788799..789428	+	209	119872394	-	Pisl_0882	-	TrkA domain-containing protein
875	 34.87	-1	789447..790163	-	238	119872395	-	Pisl_0883	-	potassium transport membrane protein, conjectural
876	 39.95	-1	790306..792678	-	790	119872396	-	Pisl_0884	-	SMC domain-containing protein
877	 39.44	-1	792656..792868	-	70	119872397	-	Pisl_0885	-	hypothetical protein
878	 39.90	-1	792858..793451	-	197	119872398	-	Pisl_0886	-	actin-like protein
879	 44.03	0	793454..794743	-	429	119872399	-	Pisl_0887	-	actin/actin family protein
880	 43.57	0	794767..795108	-	113	119872400	-	Pisl_0888	-	hypothetical protein
881	 45.61	0	795141..795857	-	238	119872401	-	Pisl_0889	-	nitroreductase
882	 42.79	0	795902..796123	+	73	119872402	-	Pisl_0890	-	hypothetical protein
883	 42.45	0	796172..796555	+	127	119872403	-	Pisl_0891	-	heat shock protein Hsp20
884	 46.22	0	796556..797176	-	206	119872404	-	Pisl_0892	-	hypothetical protein
885	 40.58	-1	797199..797750	-	183	119872405	-	Pisl_0893	-	tRNA-splicing endonuclease subunit alpha
886	 46.15	0	797747..798097	-	116	119872406	-	Pisl_0894	-	hypothetical protein
887	 44.99	0	798969..800726	-	585	119872407	-	Pisl_0895	-	glycyl-tRNA synthetase
888	 43.73	0	800816..801700	+	294	119872408	-	Pisl_0896	-	cation diffusion facilitator family transporter
889	 45.85	0	801693..802499	+	268	119872409	-	Pisl_0897	-	putative agmatinase
890	 48.06	0	802596..803111	+	171	119872410	-	Pisl_0898	-	cytidyltransferase-like protein
891	 42.94	0	803101..803277	+	58	119872411	rpoP	Pisl_0899	-	DNA-directed RNA polymerase subunit P
892	 51.28	0	803277..803510	+	77	119872412	-	Pisl_0900	-	hypothetical protein
893	 47.88	0	803505..804281	-	258	119872413	-	Pisl_0901	-	ABC-2 type transport system, membrane protein
894	 51.37	0	804271..805035	-	254	119872414	-	Pisl_0902	-	ABC-2 type transporter
895	 49.56	0	805032..805943	-	303	119872415	-	Pisl_0903	-	ABC transporter related
896	 46.13	0	806427..807020	+	197	119872416	-	Pisl_0904	-	HAD family hydrolase
897	 42.22	0	807153..807872	-	239	119872417	-	Pisl_0905	-	hypothetical protein
898	 45.48	0	807908..808261	+	117	119872418	-	Pisl_0906	-	hypothetical protein
899	 45.71	0	808297..808506	+	69	119872419	-	Pisl_0907	-	hypothetical protein
900	 50.78	0	808503..809402	-	299	119872420	-	Pisl_0908	-	peptidase T2, asparaginase 2
901	 44.79	0	809399..809878	-	159	119872421	rps4p	Pisl_0909	-	30S ribosomal protein S4
902	 45.89	0	809912..810373	-	153	119872422	rps13p	Pisl_0910	-	30S ribosomal protein S13P
903	 41.86	0	810402..811820	-	472	119872423	-	Pisl_0911	-	binding-protein-dependent transport systems inner membrane component
904	 44.35	0	811817..812887	-	356	119872424	-	Pisl_0912	-	binding-protein-dependent transport systems inner membrane component
905	 49.79	0	812937..815543	-	868	119872425	-	Pisl_0913	-	cell wall anchor domain-containing protein
906	 36.95	-1	815547..815795	-	82	119872426	-	Pisl_0914	-	hypothetical protein
907	 48.75	0	815773..816933	-	386	119872427	-	Pisl_0915	-	pullulanase
908	 40.68	-1	817210..817944	-	244	119872428	-	Pisl_0916	-	hypothetical protein
909	 49.91	0	817919..818467	-	182	119872429	rpl10e	Pisl_0917	-	50S ribosomal protein L10e
910	 41.79	0	818512..818901	-	129	119872430	nac	Pisl_0918	-	nascent polypeptide-associated complex protein
911	 51.62	0	818898..821576	-	892	119872431	alaS	Pisl_0919	-	alanyl-tRNA synthetase
912	 40.51	-1	821620..822009	+	129	119872432	-	Pisl_0920	-	hypothetical protein
913	 47.75	0	821982..822203	-	73	119872433	-	Pisl_0921	-	DNA-directed RNA polymerase subunit E, RpoE2
914	 45.24	0	822200..822787	-	195	119872434	-	Pisl_0922	-	DNA-directed RNA polymerase subunit E'
915	 42.98	0	822809..823150	-	113	119872435	-	Pisl_0923	-	PilT domain-containing protein
916	 44.25	0	823147..824190	-	347	119872436	-	Pisl_0924	-	hypothetical protein
917	 46.41	0	824187..824645	-	152	119872437	-	Pisl_0925	-	histidine triad (HIT) protein
918	 39.71	-1	824669..824872	-	67	119872438	-	Pisl_0926	-	hypothetical protein
919	 44.88	0	824960..825652	+	230	119872439	-	Pisl_0927	-	hypothetical protein
920	 47.41	0	825660..826739	+	359	119872440	-	Pisl_0928	-	nucleotidyl transferase
921	 47.52	0	826731..827456	-	241	119872441	-	Pisl_0929	-	photosystem I assembly BtpA
922	 42.13	0	827657..828088	+	143	119872442	-	Pisl_0930	-	hypothetical protein
923	 39.62	-1	828204..828569	-	121	119872443	-	Pisl_0931	-	hypothetical protein
924	 39.84	-1	828553..829443	-	296	119872444	-	Pisl_0932	-	peptidase M48, Ste24p
925	 36.29	-1	829479..829850	-	123	119872445	-	Pisl_0933	-	hypothetical protein
926	 38.63	-1	830140..831348	-	402	119872446	-	Pisl_0934	-	helicase c2
927	 34.22	-2	831363..831701	-	112	119872447	-	Pisl_0935	-	hypothetical protein
928	 45.01	0	831714..832475	-	253	119872448	-	Pisl_0936	-	stationary-phase survival protein SurE
929	 53.03	0	833884..834213	+	109	119872449	-	Pisl_0937	-	hypothetical protein
930	 44.79	0	834530..835891	+	453	119872450	-	Pisl_0938	-	geranylgeranyl reductase
931	 44.62	0	835892..836449	+	185	119872451	-	Pisl_0939	-	class II aldolase/adducin family protein
932	 44.97	0	836446..837081	+	211	119872452	-	Pisl_0940	-	hypothetical protein
933	 44.13	0	837078..838448	+	456	119872453	-	Pisl_0941	-	AAA ATPase
934	 40.98	-1	838451..839614	+	387	119872454	-	Pisl_0942	-	hypothetical protein
935	 41.90	0	839601..840137	-	178	119872455	-	Pisl_0943	-	hypothetical protein
936	 42.34	0	840182..841147	-	321	119872456	-	Pisl_0944	-	hypothetical protein
937	 44.41	0	841149..842042	-	297	119872457	-	Pisl_0945	-	iron-sulfur cluster loop
938	 44.09	0	842089..842469	+	126	119872458	-	Pisl_0946	-	hypothetical protein
939	 40.07	-1	842498..842779	+	93	119872459	-	Pisl_0947	-	MoaD family protein
940	 46.03	0	842754..843194	-	146	119872460	-	Pisl_0948	-	hypothetical protein
941	 39.87	-1	843226..843378	+	50	119872461	-	Pisl_0949	-	CopG/Arc/MetJ family transcriptional regulator
942	 47.17	0	843375..844241	-	288	119872462	-	Pisl_0950	-	tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit
943	 45.28	0	844317..844952	+	211	119872463	-	Pisl_0951	-	tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.