IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.97   STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
800	 37.27	-1	727170..727499	+	109	119872320	-	Pisl_0808	-	30S ribosomal protein S25e
801	 40.16	-1	727496..728110	-	204	119872321	-	Pisl_0809	-	hypothetical protein
802	 37.33	-1	728141..728365	-	74	119872322	-	Pisl_0810	-	hypothetical protein
803	 45.01	0	728413..729465	-	350	119872323	-	Pisl_0811	-	hypothetical protein
804	 41.73	0	729462..729866	-	134	119872324	-	Pisl_0812	-	hypothetical protein
805	 44.99	0	729900..731006	-	368	119872325	-	Pisl_0813	-	acetyl-CoA C-acyltransferase
806	 43.58	0	731035..732234	+	399	119872326	-	Pisl_0814	-	3-hydroxy-3-methylglutaryl coenzyme A reductase
807	 35.51	-1	732745..733158	-	137	119872327	-	Pisl_0815	-	hypothetical protein
808	 40.70	-1	733393..735957	+	854	119872328	-	Pisl_0816	-	DNA polymerase I
809	 41.12	-1	735949..736359	-	136	119872329	-	Pisl_0817	-	hypothetical protein
810	 41.44	-1	736379..736933	-	184	119872330	-	Pisl_0818	-	CDP-alcohol phosphatidyltransferase
811	 43.33	0	736950..737429	-	159	119872331	-	Pisl_0819	-	hypothetical protein
812	 42.76	0	737426..737722	-	98	119872332	-	Pisl_0820	-	30S ribosomal protein S26e
813	 56.16	0	738395..738889	-	164	119872333	-	Pisl_0821	-	paREP12
814	 42.33	0	738970..740436	-	488	119872334	-	Pisl_0822	-	prolyl-tRNA synthetase
815	 40.26	-1	740526..741290	-	254	119872335	-	Pisl_0823	-	beta-aspartate methyltransferase, conjectural
816	 39.12	-1	741312..741812	-	166	119872336	-	Pisl_0824	-	hypothetical protein
817	 43.38	0	742000..742626	-	208	119872337	-	Pisl_0825	-	Mn2+-dependent serine/threonine protein kinase
818	 43.94	0	742672..743793	+	373	119872338	-	Pisl_0826	-	radical SAM domain-containing protein
819	 43.41	0	744096..744998	-	300	119872339	-	Pisl_0827	-	hypothetical protein
820	 43.83	0	745482..746024	+	180	119872340	-	Pisl_0828	-	hypothetical protein
821	 45.79	0	746021..746911	-	296	119872341	-	Pisl_0829	-	phosphoesterase domain-containing protein
822	 43.22	0	746896..747168	-	90	119872342	-	Pisl_0830	-	hypothetical protein
823	 42.59	0	747173..747550	-	125	119872343	-	Pisl_0831	-	prefoldin, beta subunit
824	 35.16	-1	747582..747800	-	72	119872344	-	Pisl_0832	-	hypothetical protein
825	 39.19	-1	747787..748332	-	181	119872345	-	Pisl_0833	-	Brix
826	 46.41	0	748345..748650	-	101	119872346	rpl37ae	Pisl_0834	-	50S ribosomal protein L37Ae
827	 42.42	0	748690..749514	-	274	119872347	-	Pisl_0835	-	exosome complex RNA-binding protein Rrp42
828	 47.10	0	749517..750257	-	246	119872348	-	Pisl_0836	-	exosome complex exonuclease Rrp41
829	 44.54	0	750298..750993	-	231	119872349	-	Pisl_0837	-	exosome complex RNA-binding protein Rrp4
830	 42.06	0	750993..751691	-	232	119872350	-	Pisl_0838	-	putative RNA-associated protein
831	 40.21	-1	751734..752606	-	290	119872351	-	Pisl_0839	-	hypothetical protein
832	 38.44	-1	752645..753565	+	306	119872352	-	Pisl_0840	-	hypothetical protein
833	 43.56	0	753620..753844	-	74	119872353	-	Pisl_0841	-	hypothetical protein
834	 39.33	-1	753860..754276	-	138	119872354	-	Pisl_0842	-	hypothetical protein
835	 36.86	-1	754323..754577	+	84	119872355	-	Pisl_0843	-	hypothetical protein
836	 42.99	0	754574..755329	-	251	119872356	-	Pisl_0844	-	proteasome subunit alpha
837	 41.71	0	755393..756979	+	528	119872357	-	Pisl_0845	-	DNA topoisomerase VI subunit B
838	 56.77	+1	757063..757638	-	191	119872358	-	Pisl_0846	-	hypothetical protein
839	 45.36	0	758875..759240	-	121	119872359	-	Pisl_0847	-	NADH dehydrogenase subunit A
840	 42.84	0	759245..760054	+	269	119872360	-	Pisl_0848	-	hypothetical protein
841	 42.59	0	760041..761336	-	431	119872361	-	Pisl_0849	-	hypothetical protein
842	 46.12	0	761420..762334	+	304	119872362	-	Pisl_0850	-	ATPase
843	 40.67	-1	762327..763403	+	358	119872363	-	Pisl_0851	-	von Willebrand factor, type A
844	 40.48	-1	763431..764480	+	349	119872364	-	Pisl_0852	-	DNA primase large subunit
845	 40.56	-1	764801..765589	+	262	119872365	-	Pisl_0853	-	N-glycosylase/DNA lyase
846	 48.29	0	765793..766173	-	126	119872366	-	Pisl_0854	-	hypothetical protein
847	 51.07	0	766749..767870	-	373	119872367	-	Pisl_0855	-	hypothetical protein
848	 45.73	0	767902..769176	-	424	119872368	-	Pisl_0856	-	UbiD family decarboxylase
849	 44.80	0	769209..769487	-	92	119872369	-	Pisl_0857	-	chromatin protein
850	 41.87	0	769623..770372	+	249	119872370	-	Pisl_0858	-	HxlR family transcriptional regulator
851	 41.57	-1	770372..770869	+	165	119872371	-	Pisl_0859	-	hypothetical protein
852	 45.20	0	770832..771851	-	339	119872372	-	Pisl_0860	-	phosphate uptake regulator, PhoU
853	 42.30	0	771982..773085	-	367	119872373	-	Pisl_0861	-	DNA topoisomerase VI subunit A
854	 57.29	+1	773461..773844	-	127	119872374	-	Pisl_0862	-	hypothetical protein
855	 48.70	0	773962..774345	+	127	119872375	-	Pisl_0863	-	hypothetical protein
856	 44.39	0	774327..774986	+	219	119872376	-	Pisl_0864	-	hypothetical protein
857	 40.03	-1	774991..775587	+	198	119872377	-	Pisl_0865	-	hypothetical protein
858	 35.00	-1	775580..775879	+	99	119872378	-	Pisl_0866	-	hypothetical protein
859	 39.57	-1	775876..776580	+	234	119872379	-	Pisl_0867	-	hypothetical protein
860	 42.79	0	776577..778109	+	510	119872380	-	Pisl_0868	-	type II secretion system protein, conjectural
861	 39.36	-1	778140..778388	+	82	119872381	-	Pisl_0869	-	hypothetical protein
862	 41.44	-1	778385..778717	+	110	119872382	-	Pisl_0870	-	hypothetical protein
863	 41.69	-1	778747..779943	+	398	119872383	-	Pisl_0871	-	hypothetical protein
864	 45.75	0	779974..780432	+	152	119872384	-	Pisl_0872	-	hypothetical protein
865	 39.14	-1	780463..781392	+	309	119872385	-	Pisl_0873	-	hypothetical protein
866	 44.52	0	781397..781834	+	145	119872386	-	Pisl_0874	-	hypothetical protein
867	 42.40	0	781836..782177	+	113	119872387	-	Pisl_0875	-	hypothetical protein
868	 38.30	-1	782179..782862	+	227	119872388	-	Pisl_0876	-	hypothetical protein
869	 43.37	0	782892..785891	+	999	119872389	-	Pisl_0877	-	hypothetical protein
870	 41.32	-1	785885..786385	+	166	119872390	-	Pisl_0878	-	hypothetical protein
871	 44.07	0	786415..786684	+	89	119872391	-	Pisl_0879	-	hypothetical protein
872	 38.33	-1	786678..786977	+	99	119872392	-	Pisl_0880	-	hypothetical protein
873	 44.27	0	787455..788615	-	386	119872393	-	Pisl_0881	-	cystathionine gamma-synthase
874	 40.48	-1	788799..789428	+	209	119872394	-	Pisl_0882	-	TrkA domain-containing protein
875	 34.87	-1	789447..790163	-	238	119872395	-	Pisl_0883	-	potassium transport membrane protein, conjectural
876	 39.95	-1	790306..792678	-	790	119872396	-	Pisl_0884	-	SMC domain-containing protein
877	 39.44	-1	792656..792868	-	70	119872397	-	Pisl_0885	-	hypothetical protein
878	 39.90	-1	792858..793451	-	197	119872398	-	Pisl_0886	-	actin-like protein
879	 44.03	0	793454..794743	-	429	119872399	-	Pisl_0887	-	actin/actin family protein
880	 43.57	0	794767..795108	-	113	119872400	-	Pisl_0888	-	hypothetical protein
881	 45.61	0	795141..795857	-	238	119872401	-	Pisl_0889	-	nitroreductase
882	 42.79	0	795902..796123	+	73	119872402	-	Pisl_0890	-	hypothetical protein
883	 42.45	0	796172..796555	+	127	119872403	-	Pisl_0891	-	heat shock protein Hsp20
884	 46.22	0	796556..797176	-	206	119872404	-	Pisl_0892	-	hypothetical protein
885	 40.58	-1	797199..797750	-	183	119872405	-	Pisl_0893	-	tRNA-splicing endonuclease subunit alpha
886	 46.15	0	797747..798097	-	116	119872406	-	Pisl_0894	-	hypothetical protein
887	 44.99	0	798969..800726	-	585	119872407	-	Pisl_0895	-	glycyl-tRNA synthetase
888	 43.73	0	800816..801700	+	294	119872408	-	Pisl_0896	-	cation diffusion facilitator family transporter
889	 45.85	0	801693..802499	+	268	119872409	-	Pisl_0897	-	putative agmatinase
890	 48.06	0	802596..803111	+	171	119872410	-	Pisl_0898	-	cytidyltransferase-like protein
891	 42.94	0	803101..803277	+	58	119872411	rpoP	Pisl_0899	-	DNA-directed RNA polymerase subunit P
892	 51.28	0	803277..803510	+	77	119872412	-	Pisl_0900	-	hypothetical protein
893	 47.88	0	803505..804281	-	258	119872413	-	Pisl_0901	-	ABC-2 type transport system, membrane protein
894	 51.37	0	804271..805035	-	254	119872414	-	Pisl_0902	-	ABC-2 type transporter
895	 49.56	0	805032..805943	-	303	119872415	-	Pisl_0903	-	ABC transporter related
896	 46.13	0	806427..807020	+	197	119872416	-	Pisl_0904	-	HAD family hydrolase
897	 42.22	0	807153..807872	-	239	119872417	-	Pisl_0905	-	hypothetical protein
898	 45.48	0	807908..808261	+	117	119872418	-	Pisl_0906	-	hypothetical protein
899	 45.71	0	808297..808506	+	69	119872419	-	Pisl_0907	-	hypothetical protein
48.97	MEAN

7.27	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.