IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
728	 44.64	0	665839..666528	+	229	119872248	-	Pisl_0735	-	hypothetical protein
729	 42.61	0	666507..666851	-	114	119872249	-	Pisl_0736	-	PilT domain-containing protein
730	 44.08	0	666848..667573	-	241	119872250	-	Pisl_0737	-	ATP-NAD/AcoX kinase
731	 47.32	0	667639..669483	-	614	119872251	-	Pisl_0738	-	aldehyde ferredoxin oxidoreductase
732	 44.83	0	669646..670689	+	347	119872252	-	Pisl_0739	-	radical SAM domain-containing protein
733	 59.03	+1	670710..672398	+	562	119872253	-	Pisl_0740	-	dihydroxy-acid dehydratase
734	 57.38	+1	672519..672755	-	78	119872254	-	Pisl_0741	-	hypothetical protein
735	 62.28	+1	672731..673345	-	204	119872255	-	Pisl_0742	-	hypothetical protein
736	 57.40	+1	673478..674437	+	319	119872256	-	Pisl_0743	-	hypothetical protein
737	 53.37	0	674748..675890	+	380	119872257	-	Pisl_0744	-	proteinase inhibitor I4, serpin
738	 46.04	0	675902..676570	-	222	119872258	-	Pisl_0745	-	hypothetical protein
739	 63.23	+1	676586..677896	-	436	119872259	-	Pisl_0746	-	hypothetical protein
740	 58.95	+1	677952..678560	+	202	119872260	-	Pisl_0747	-	methyltransferase small
741	 50.44	0	680147..681169	+	340	119872261	-	Pisl_0749	-	band 7 protein
742	 48.97	0	681166..681504	+	112	119872262	-	Pisl_0750	-	hypothetical protein
743	 49.81	0	681505..682020	-	171	119872263	-	Pisl_0751	-	hypothetical protein
744	 44.06	0	682383..683417	+	344	119872264	-	Pisl_0752	-	small GTP-binding protein
745	 52.15	0	683420..684466	-	348	119872265	-	Pisl_0753	-	RNA 3'-terminal-phosphate cyclase
746	 46.57	0	684523..685134	+	203	119872266	-	Pisl_0754	-	proteasome endopeptidase complex
747	 47.51	0	685136..686038	-	300	119872267	-	Pisl_0755	-	electron transfer flavoprotein, alpha subunit
748	 44.62	0	686035..686805	-	256	119872268	-	Pisl_0756	-	electron transfer flavoprotein beta-subunit
749	 57.16	+1	687004..688065	-	353	119872269	-	Pisl_0757	-	asparagine synthetase A
750	 48.93	0	688202..688528	+	108	119872270	-	Pisl_0758	-	hypothetical protein
751	 65.63	+2	688525..689871	+	448	119872271	-	Pisl_0759	-	hypothetical protein
752	 52.61	0	689868..690422	-	184	119872272	-	Pisl_0760	-	hypothetical protein
753	 51.80	0	690392..691393	-	333	119872273	-	Pisl_0761	-	hypothetical protein
754	 61.15	+1	691413..692663	-	416	119872274	-	Pisl_0762	-	Fmu (Sun) domain-containing protein
755	 60.16	+1	692660..693166	-	168	119872275	-	Pisl_0763	-	phosphodiesterase
756	 45.19	0	693203..693742	-	179	119872276	rpl5p	Pisl_0764	-	50S ribosomal protein L5P
757	 47.41	0	693779..694609	-	276	119872277	-	Pisl_0765	-	hypothetical protein
758	 47.85	0	694848..695453	+	201	119872278	-	Pisl_0766	-	hypothetical protein
759	 33.05	-2	696424..696777	-	117	119872279	-	Pisl_0767	-	hypothetical protein
760	 43.74	0	696826..697728	-	300	119872280	-	Pisl_0768	-	radical SAM domain-containing protein
761	 43.97	0	697772..698335	+	187	119872281	-	Pisl_0769	-	hypothetical protein
762	 45.06	0	698336..699529	-	397	119872282	-	Pisl_0770	-	aminotransferase, class I and II
763	 41.11	-1	700107..700775	+	222	119872283	-	Pisl_0771	-	30S ribosomal protein S3Ae
764	 42.94	0	700772..701302	-	176	119872284	-	Pisl_0772	-	putative RNA-processing protein
765	 40.82	-1	701347..702147	+	266	119872285	-	Pisl_0773	-	protein of unknown function RIO1
766	 44.13	0	702139..702666	-	175	119872286	-	Pisl_0774	-	indolepyruvate oxidoreductase subunit B
767	 46.15	0	702651..704429	-	592	119872287	-	Pisl_0775	-	thiamine pyrophosphate binding domain-containing protein
768	 44.07	0	704512..704781	+	89	119872288	-	Pisl_0776	-	DNA-directed RNA polymerase, M/15 kDa subunit
769	 44.37	0	705321..705782	+	153	119872289	-	Pisl_0777	-	hypothetical protein
770	 36.67	-1	705769..706008	-	79	119872290	-	Pisl_0778	-	hypothetical protein
771	 39.25	-1	705989..707053	-	354	119872291	-	Pisl_0779	-	hypothetical protein
772	 41.67	-1	707081..707536	-	151	119872292	rps15p	Pisl_0780	-	30S ribosomal protein S15P
773	 44.54	0	707585..707950	+	121	119872293	-	Pisl_0781	-	hypothetical protein
774	 42.09	0	707919..708386	+	155	119872294	-	Pisl_0782	-	hypothetical protein
775	 44.94	0	708383..709261	+	292	119872295	-	Pisl_0783	-	putative deoxyhypusine synthase
776	 42.75	0	709263..710228	+	321	119872296	-	Pisl_0784	-	glycosyl transferase family protein
777	 39.81	-1	710225..710440	+	71	119872297	-	Pisl_0785	-	hypothetical protein
778	 41.56	-1	710558..711043	+	161	119872298	-	Pisl_0786	-	Miro domain-containing protein
779	 41.10	-1	711040..711876	+	278	119872299	-	Pisl_0787	-	hypothetical protein
780	 45.27	0	711853..712539	-	228	119872300	-	Pisl_0788	-	SPP-like hydrolase
781	 41.45	-1	712563..713129	-	188	119872301	-	Pisl_0789	-	hypothetical protein
782	 42.96	0	713915..714319	-	134	119872302	-	Pisl_0790	-	hypothetical protein
783	 44.72	0	714364..715092	+	242	119872303	-	Pisl_0791	-	hypothetical protein
784	 46.57	0	715071..715478	-	135	119872304	-	Pisl_0792	-	hypothetical protein
785	 47.35	0	715471..716226	-	251	119872305	-	Pisl_0793	-	NAD-dependent deacetylase
786	 48.44	0	716373..718034	+	553	119872306	-	Pisl_0794	-	peptidase S16, lon domain-containing protein
787	 40.82	-1	718024..718317	-	97	119872307	-	Pisl_0795	-	hypothetical protein
788	 43.95	0	718431..718967	+	178	119872308	-	Pisl_0796	-	hypothetical protein
789	 44.71	0	718971..719726	+	251	119872309	-	Pisl_0797	-	resolvase domain-containing protein
790	 43.22	0	719807..720352	-	181	119872310	-	Pisl_0798	-	phosphoribosyltransferase
791	 44.76	0	720717..722309	+	530	119872311	-	Pisl_0799	-	CTP synthetase
792	 54.55	0	722481..722711	-	76	119872312	-	Pisl_0800	-	hypothetical protein
793	 57.29	+1	722829..723212	+	127	119872313	-	Pisl_0801	-	hypothetical protein
794	 40.40	-1	723562..724368	+	268	119872314	-	Pisl_0802	-	metallophosphoesterase
795	 42.72	0	724505..725218	-	237	119872315	-	Pisl_0803	-	beta-lactamase domain-containing protein
796	 40.51	-1	725215..725451	-	78	119872316	-	Pisl_0804	-	hypothetical protein
797	 42.72	0	725533..725958	-	141	119872317	-	Pisl_0805	-	holliday junction resolvase
798	 41.72	0	725955..726443	-	162	119872318	-	Pisl_0806	-	hypothetical protein
799	 44.50	0	726440..727039	-	199	119872319	-	Pisl_0807	-	transcription factor
800	 37.27	-1	727170..727499	+	109	119872320	-	Pisl_0808	-	30S ribosomal protein S25e
801	 40.16	-1	727496..728110	-	204	119872321	-	Pisl_0809	-	hypothetical protein
802	 37.33	-1	728141..728365	-	74	119872322	-	Pisl_0810	-	hypothetical protein
803	 45.01	0	728413..729465	-	350	119872323	-	Pisl_0811	-	hypothetical protein
804	 41.73	0	729462..729866	-	134	119872324	-	Pisl_0812	-	hypothetical protein
805	 44.99	0	729900..731006	-	368	119872325	-	Pisl_0813	-	acetyl-CoA C-acyltransferase
806	 43.58	0	731035..732234	+	399	119872326	-	Pisl_0814	-	3-hydroxy-3-methylglutaryl coenzyme A reductase
807	 35.51	-1	732745..733158	-	137	119872327	-	Pisl_0815	-	hypothetical protein
808	 40.70	-1	733393..735957	+	854	119872328	-	Pisl_0816	-	DNA polymerase I
809	 41.12	-1	735949..736359	-	136	119872329	-	Pisl_0817	-	hypothetical protein
810	 41.44	-1	736379..736933	-	184	119872330	-	Pisl_0818	-	CDP-alcohol phosphatidyltransferase
811	 43.33	0	736950..737429	-	159	119872331	-	Pisl_0819	-	hypothetical protein
812	 42.76	0	737426..737722	-	98	119872332	-	Pisl_0820	-	30S ribosomal protein S26e
813	 56.16	0	738395..738889	-	164	119872333	-	Pisl_0821	-	paREP12
814	 42.33	0	738970..740436	-	488	119872334	-	Pisl_0822	-	prolyl-tRNA synthetase
815	 40.26	-1	740526..741290	-	254	119872335	-	Pisl_0823	-	beta-aspartate methyltransferase, conjectural
816	 39.12	-1	741312..741812	-	166	119872336	-	Pisl_0824	-	hypothetical protein
817	 43.38	0	742000..742626	-	208	119872337	-	Pisl_0825	-	Mn2+-dependent serine/threonine protein kinase
818	 43.94	0	742672..743793	+	373	119872338	-	Pisl_0826	-	radical SAM domain-containing protein
819	 43.41	0	744096..744998	-	300	119872339	-	Pisl_0827	-	hypothetical protein
820	 43.83	0	745482..746024	+	180	119872340	-	Pisl_0828	-	hypothetical protein
821	 45.79	0	746021..746911	-	296	119872341	-	Pisl_0829	-	phosphoesterase domain-containing protein
822	 43.22	0	746896..747168	-	90	119872342	-	Pisl_0830	-	hypothetical protein
823	 42.59	0	747173..747550	-	125	119872343	-	Pisl_0831	-	prefoldin, beta subunit
824	 35.16	-1	747582..747800	-	72	119872344	-	Pisl_0832	-	hypothetical protein
825	 39.19	-1	747787..748332	-	181	119872345	-	Pisl_0833	-	Brix
826	 46.41	0	748345..748650	-	101	119872346	rpl37ae	Pisl_0834	-	50S ribosomal protein L37Ae
827	 42.42	0	748690..749514	-	274	119872347	-	Pisl_0835	-	exosome complex RNA-binding protein Rrp42
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.