IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
692	 45.27	0	633456..633899	-	147	119872212	rps12P	Pisl_0698	-	30S ribosomal protein S12P
693	 39.77	-1	633936..634370	-	144	119872213	-	Pisl_0699	-	transcription elongation factor NusA-like protein
694	 41.50	-1	634363..634668	-	101	119872214	-	Pisl_0700	-	ribosomal protein L7Ae/L30e/S12e/Gadd45
695	 42.37	0	634708..635847	-	379	119872215	-	Pisl_0701	-	DNA-directed RNA polymerase subunit A''
696	 44.07	0	635844..638498	-	884	119872216	-	Pisl_0702	-	DNA-directed RNA polymerase subunit alpha
697	 43.94	0	638539..641922	-	1127	119872217	-	Pisl_0703	-	DNA-directed RNA polymerase subunit beta
698	 44.30	0	641972..642199	-	75	119872218	rpoH	Pisl_0704	-	DNA-directed RNA polymerase subunit H
699	 44.00	0	642230..644011	-	593	119872219	-	Pisl_0705	-	V-type ATP synthase subunit A
700	 34.90	-1	644001..644573	-	190	119872220	-	Pisl_0706	-	H+-transporting two-sector ATPase, E subunit
701	 40.89	-1	644602..644892	-	96	119872221	-	Pisl_0707	-	vacuolar H+-transporting two-sector ATPase, F subunit
702	 40.00	-1	644929..645423	-	164	119872222	-	Pisl_0708	-	hypothetical protein
703	 40.95	-1	645423..645737	-	104	119872223	-	Pisl_0709	-	zinc finger C2H2-type domain-containing protein
704	 48.05	0	645784..646218	+	144	119872224	-	Pisl_0710	-	hypothetical protein
705	 43.61	0	646215..647810	-	531	119872225	-	Pisl_0711	-	radical SAM domain-containing protein
706	 44.90	0	647859..648446	+	195	119872226	-	Pisl_0712	-	hypothetical protein
707	 53.37	0	648443..649435	-	330	119872227	radA	Pisl_0713	-	DNA repair and recombination protein RadA
708	 41.97	0	649591..650412	+	273	119872228	-	Pisl_0714	-	protein of unknown function Met10
709	 41.94	0	650409..650873	-	154	119872229	-	Pisl_0715	-	hypothetical protein
710	 44.26	0	650904..652514	-	536	119872230	-	Pisl_0716	-	hypothetical protein
711	 39.30	-1	652511..653398	-	295	119872231	-	Pisl_0717	-	hypothetical protein
712	 44.85	0	653818..654399	-	193	119872232	-	Pisl_0718	-	phage SPO1 DNA polymerase-related protein
713	 43.60	0	654458..655129	+	223	119872233	-	Pisl_0719	-	hypothetical protein
714	 42.86	0	655167..655334	+	55	119872234	-	Pisl_0720	-	paREP10
715	 43.91	0	655552..656430	-	292	119872235	-	Pisl_0721	-	alpha-L-glutamate ligase
716	 43.80	0	656465..657037	+	190	119872236	-	Pisl_0722	-	hypothetical protein
717	 41.77	0	657016..657513	-	165	119872237	-	Pisl_0723	-	hypothetical protein
718	 43.33	0	657724..658143	+	139	119872238	-	Pisl_0724	-	hypothetical protein
719	 42.09	0	658118..658471	-	117	119872239	-	Pisl_0725	-	transcriptional regulator, TrmB
720	 45.33	0	658465..658956	-	163	119872240	-	Pisl_0726	-	hypothetical protein
721	 38.71	-1	658999..659370	+	123	119872241	-	Pisl_0727	-	hypothetical protein
722	 45.15	0	659400..660440	+	346	119872242	-	Pisl_0728	-	Fis family transcriptional regulator
723	 44.44	0	660437..661273	-	278	119872243	-	Pisl_0729	-	hypothetical protein
724	 43.43	0	661366..661662	+	98	119872244	-	Pisl_0730	-	hypothetical protein
725	 40.62	-1	661654..663081	-	475	119872245	-	Pisl_0731	-	metal dependent phosphohydrolase
726	 44.66	0	663133..664209	+	358	119872246	-	Pisl_0732	-	hypothetical protein
727	 43.79	0	664174..665292	-	372	119872247	-	Pisl_0733	-	tyrosyl-tRNA synthetase
728	 44.64	0	665839..666528	+	229	119872248	-	Pisl_0735	-	hypothetical protein
729	 42.61	0	666507..666851	-	114	119872249	-	Pisl_0736	-	PilT domain-containing protein
730	 44.08	0	666848..667573	-	241	119872250	-	Pisl_0737	-	ATP-NAD/AcoX kinase
731	 47.32	0	667639..669483	-	614	119872251	-	Pisl_0738	-	aldehyde ferredoxin oxidoreductase
732	 44.83	0	669646..670689	+	347	119872252	-	Pisl_0739	-	radical SAM domain-containing protein
733	 59.03	+1	670710..672398	+	562	119872253	-	Pisl_0740	-	dihydroxy-acid dehydratase
734	 57.38	+1	672519..672755	-	78	119872254	-	Pisl_0741	-	hypothetical protein
735	 62.28	+1	672731..673345	-	204	119872255	-	Pisl_0742	-	hypothetical protein
736	 57.40	+1	673478..674437	+	319	119872256	-	Pisl_0743	-	hypothetical protein
737	 53.37	0	674748..675890	+	380	119872257	-	Pisl_0744	-	proteinase inhibitor I4, serpin
738	 46.04	0	675902..676570	-	222	119872258	-	Pisl_0745	-	hypothetical protein
739	 63.23	+1	676586..677896	-	436	119872259	-	Pisl_0746	-	hypothetical protein
740	 58.95	+1	677952..678560	+	202	119872260	-	Pisl_0747	-	methyltransferase small
741	 50.44	0	680147..681169	+	340	119872261	-	Pisl_0749	-	band 7 protein
742	 48.97	0	681166..681504	+	112	119872262	-	Pisl_0750	-	hypothetical protein
743	 49.81	0	681505..682020	-	171	119872263	-	Pisl_0751	-	hypothetical protein
744	 44.06	0	682383..683417	+	344	119872264	-	Pisl_0752	-	small GTP-binding protein
745	 52.15	0	683420..684466	-	348	119872265	-	Pisl_0753	-	RNA 3'-terminal-phosphate cyclase
746	 46.57	0	684523..685134	+	203	119872266	-	Pisl_0754	-	proteasome endopeptidase complex
747	 47.51	0	685136..686038	-	300	119872267	-	Pisl_0755	-	electron transfer flavoprotein, alpha subunit
748	 44.62	0	686035..686805	-	256	119872268	-	Pisl_0756	-	electron transfer flavoprotein beta-subunit
749	 57.16	+1	687004..688065	-	353	119872269	-	Pisl_0757	-	asparagine synthetase A
750	 48.93	0	688202..688528	+	108	119872270	-	Pisl_0758	-	hypothetical protein
751	 65.63	+2	688525..689871	+	448	119872271	-	Pisl_0759	-	hypothetical protein
752	 52.61	0	689868..690422	-	184	119872272	-	Pisl_0760	-	hypothetical protein
753	 51.80	0	690392..691393	-	333	119872273	-	Pisl_0761	-	hypothetical protein
754	 61.15	+1	691413..692663	-	416	119872274	-	Pisl_0762	-	Fmu (Sun) domain-containing protein
755	 60.16	+1	692660..693166	-	168	119872275	-	Pisl_0763	-	phosphodiesterase
756	 45.19	0	693203..693742	-	179	119872276	rpl5p	Pisl_0764	-	50S ribosomal protein L5P
757	 47.41	0	693779..694609	-	276	119872277	-	Pisl_0765	-	hypothetical protein
758	 47.85	0	694848..695453	+	201	119872278	-	Pisl_0766	-	hypothetical protein
759	 33.05	-2	696424..696777	-	117	119872279	-	Pisl_0767	-	hypothetical protein
760	 43.74	0	696826..697728	-	300	119872280	-	Pisl_0768	-	radical SAM domain-containing protein
761	 43.97	0	697772..698335	+	187	119872281	-	Pisl_0769	-	hypothetical protein
762	 45.06	0	698336..699529	-	397	119872282	-	Pisl_0770	-	aminotransferase, class I and II
763	 41.11	-1	700107..700775	+	222	119872283	-	Pisl_0771	-	30S ribosomal protein S3Ae
764	 42.94	0	700772..701302	-	176	119872284	-	Pisl_0772	-	putative RNA-processing protein
765	 40.82	-1	701347..702147	+	266	119872285	-	Pisl_0773	-	protein of unknown function RIO1
766	 44.13	0	702139..702666	-	175	119872286	-	Pisl_0774	-	indolepyruvate oxidoreductase subunit B
767	 46.15	0	702651..704429	-	592	119872287	-	Pisl_0775	-	thiamine pyrophosphate binding domain-containing protein
768	 44.07	0	704512..704781	+	89	119872288	-	Pisl_0776	-	DNA-directed RNA polymerase, M/15 kDa subunit
769	 44.37	0	705321..705782	+	153	119872289	-	Pisl_0777	-	hypothetical protein
770	 36.67	-1	705769..706008	-	79	119872290	-	Pisl_0778	-	hypothetical protein
771	 39.25	-1	705989..707053	-	354	119872291	-	Pisl_0779	-	hypothetical protein
772	 41.67	-1	707081..707536	-	151	119872292	rps15p	Pisl_0780	-	30S ribosomal protein S15P
773	 44.54	0	707585..707950	+	121	119872293	-	Pisl_0781	-	hypothetical protein
774	 42.09	0	707919..708386	+	155	119872294	-	Pisl_0782	-	hypothetical protein
775	 44.94	0	708383..709261	+	292	119872295	-	Pisl_0783	-	putative deoxyhypusine synthase
776	 42.75	0	709263..710228	+	321	119872296	-	Pisl_0784	-	glycosyl transferase family protein
777	 39.81	-1	710225..710440	+	71	119872297	-	Pisl_0785	-	hypothetical protein
778	 41.56	-1	710558..711043	+	161	119872298	-	Pisl_0786	-	Miro domain-containing protein
779	 41.10	-1	711040..711876	+	278	119872299	-	Pisl_0787	-	hypothetical protein
780	 45.27	0	711853..712539	-	228	119872300	-	Pisl_0788	-	SPP-like hydrolase
781	 41.45	-1	712563..713129	-	188	119872301	-	Pisl_0789	-	hypothetical protein
782	 42.96	0	713915..714319	-	134	119872302	-	Pisl_0790	-	hypothetical protein
783	 44.72	0	714364..715092	+	242	119872303	-	Pisl_0791	-	hypothetical protein
784	 46.57	0	715071..715478	-	135	119872304	-	Pisl_0792	-	hypothetical protein
785	 47.35	0	715471..716226	-	251	119872305	-	Pisl_0793	-	NAD-dependent deacetylase
786	 48.44	0	716373..718034	+	553	119872306	-	Pisl_0794	-	peptidase S16, lon domain-containing protein
787	 40.82	-1	718024..718317	-	97	119872307	-	Pisl_0795	-	hypothetical protein
788	 43.95	0	718431..718967	+	178	119872308	-	Pisl_0796	-	hypothetical protein
789	 44.71	0	718971..719726	+	251	119872309	-	Pisl_0797	-	resolvase domain-containing protein
790	 43.22	0	719807..720352	-	181	119872310	-	Pisl_0798	-	phosphoribosyltransferase
791	 44.76	0	720717..722309	+	530	119872311	-	Pisl_0799	-	CTP synthetase
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.