IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
648	 37.68	-1	596628..596834	+	68	119872168	-	Pisl_0654	-	hypothetical protein
649	 43.70	0	596895..597569	+	224	119872169	-	Pisl_0655	-	30S ribosomal protein S7P
650	 45.25	0	597599..598588	+	329	119872170	rfc	Pisl_0656	-	replication factor C small subunit
651	 42.45	0	598588..599859	+	423	119872171	-	Pisl_0657	-	replication factor C large subunit
652	 30.74	-2	599871..600140	+	89	119872172	-	Pisl_0658	-	hypothetical protein
653	 42.39	0	600206..601375	+	389	119872173	cdc6	Pisl_0659	-	cell division control protein 6
654	 40.21	-1	601372..601662	+	96	119872174	-	Pisl_0660	-	ArsR family transcriptional regulator
655	 41.13	-1	601687..602289	+	200	119872175	-	Pisl_0661	-	hypothetical protein
656	 50.96	0	602242..602604	-	120	119872176	-	Pisl_0662	-	hypothetical protein
657	 45.45	0	603041..604138	+	365	119872177	-	Pisl_0663	-	translation initiation factor IF-2B subunit alpha
658	 34.28	-2	604246..604563	+	105	119872178	-	Pisl_0664	-	hypothetical protein
659	 44.21	0	604560..605690	+	376	119872179	-	Pisl_0665	-	PUA domain-containing protein
660	 48.64	0	606198..606602	+	134	119872180	-	Pisl_0666	-	hypothetical protein
661	 41.12	-1	606737..607507	+	256	119872181	-	Pisl_0667	-	proliferating-cell nuclear antigen-like protein
662	 40.18	-1	607586..607921	-	111	119872182	-	Pisl_0668	-	succinate dehydrogenase subunit D
663	 41.25	-1	607918..608397	-	159	119872183	-	Pisl_0669	-	hypothetical protein
664	 43.28	0	608399..609112	-	237	119872184	sdhB	Pisl_0670	-	succinate dehydrogenase iron-sulfur subunit
665	 46.74	0	609114..610859	-	581	119872185	sdhA	Pisl_0671	-	succinate dehydrogenase flavoprotein subunit
666	 41.75	0	610969..611574	+	201	119872186	-	Pisl_0672	-	hypothetical protein
667	 42.72	0	611609..612034	+	141	119872187	-	Pisl_0673	-	NUDIX hydrolase
668	 50.89	0	612027..615797	-	1256	119872188	-	Pisl_0674	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
669	 49.58	0	615870..616226	+	118	119872189	-	Pisl_0675	-	peptidyl-tRNA hydrolase
670	 38.46	-1	616244..616438	+	64	119872190	-	Pisl_0676	-	hypothetical protein
671	 45.76	0	616419..618116	-	565	119872191	-	Pisl_0677	-	radical SAM domain-containing protein
672	 43.41	0	618172..618687	+	171	119872192	-	Pisl_0678	-	transcription elongation factor NusA-like protein
673	 44.03	0	618724..620013	+	429	119872193	aspC	Pisl_0679	-	aspartyl-tRNA synthetase
674	 44.87	0	620010..620633	-	207	119872194	-	Pisl_0680	-	protein-L-isoaspartate O-methyltransferase
675	 43.71	0	620635..621675	-	346	119872195	-	Pisl_0681	-	flap endonuclease-1
676	 31.08	-2	621701..621922	-	73	119872196	-	Pisl_0682	-	hypothetical protein
677	 48.27	0	621919..624114	-	731	119872197	-	Pisl_0683	-	AAA family ATPase, CDC48 subfamily protein
678	 37.63	-1	624151..624429	-	92	119872198	-	Pisl_0684	-	elongation factor 1, beta/beta'/delta chain
679	 50.00	0	624468..624665	-	65	119872199	-	Pisl_0685	-	hypothetical protein
680	 44.59	0	624871..625536	-	221	119872200	-	Pisl_0686	-	endonuclease V
681	 39.21	-1	625527..626207	-	226	119872201	-	Pisl_0687	-	cytidyltransferase-like protein
682	 42.86	0	626359..626862	-	167	119872202	-	Pisl_0688	-	hypothetical protein
683	 39.09	-1	626894..627814	+	306	119872203	-	Pisl_0689	-	protein of unknown function RIO1
684	 41.22	-1	627818..629593	+	591	119872204	-	Pisl_0690	-	hypothetical protein
685	 43.34	0	629567..630775	-	402	119872205	-	Pisl_0691	-	S-adenosylmethionine synthetase
686	 41.38	-1	630772..631032	-	86	119872206	-	Pisl_0692	-	like-Sm ribonucleoprotein, core
687	 41.79	0	631080..631280	-	66	119872207	-	Pisl_0693	-	DNA-directed RNA polymerase subunit N
688	 44.67	0	631277..631717	-	146	119872208	rps9p	Pisl_0694	-	30S ribosomal protein S9P
689	 42.29	0	631720..632277	-	185	119872209	-	Pisl_0695	-	ribosomal protein L13
690	 43.09	0	632274..632642	-	122	119872210	-	Pisl_0696	-	50S ribosomal protein L18e
691	 39.92	-1	632668..633456	-	262	119872211	-	Pisl_0697	-	RNA polymerase, insert
692	 45.27	0	633456..633899	-	147	119872212	rps12P	Pisl_0698	-	30S ribosomal protein S12P
693	 39.77	-1	633936..634370	-	144	119872213	-	Pisl_0699	-	transcription elongation factor NusA-like protein
694	 41.50	-1	634363..634668	-	101	119872214	-	Pisl_0700	-	ribosomal protein L7Ae/L30e/S12e/Gadd45
695	 42.37	0	634708..635847	-	379	119872215	-	Pisl_0701	-	DNA-directed RNA polymerase subunit A''
696	 44.07	0	635844..638498	-	884	119872216	-	Pisl_0702	-	DNA-directed RNA polymerase subunit alpha
697	 43.94	0	638539..641922	-	1127	119872217	-	Pisl_0703	-	DNA-directed RNA polymerase subunit beta
698	 44.30	0	641972..642199	-	75	119872218	rpoH	Pisl_0704	-	DNA-directed RNA polymerase subunit H
699	 44.00	0	642230..644011	-	593	119872219	-	Pisl_0705	-	V-type ATP synthase subunit A
700	 34.90	-1	644001..644573	-	190	119872220	-	Pisl_0706	-	H+-transporting two-sector ATPase, E subunit
701	 40.89	-1	644602..644892	-	96	119872221	-	Pisl_0707	-	vacuolar H+-transporting two-sector ATPase, F subunit
702	 40.00	-1	644929..645423	-	164	119872222	-	Pisl_0708	-	hypothetical protein
703	 40.95	-1	645423..645737	-	104	119872223	-	Pisl_0709	-	zinc finger C2H2-type domain-containing protein
704	 48.05	0	645784..646218	+	144	119872224	-	Pisl_0710	-	hypothetical protein
705	 43.61	0	646215..647810	-	531	119872225	-	Pisl_0711	-	radical SAM domain-containing protein
706	 44.90	0	647859..648446	+	195	119872226	-	Pisl_0712	-	hypothetical protein
707	 53.37	0	648443..649435	-	330	119872227	radA	Pisl_0713	-	DNA repair and recombination protein RadA
708	 41.97	0	649591..650412	+	273	119872228	-	Pisl_0714	-	protein of unknown function Met10
709	 41.94	0	650409..650873	-	154	119872229	-	Pisl_0715	-	hypothetical protein
710	 44.26	0	650904..652514	-	536	119872230	-	Pisl_0716	-	hypothetical protein
711	 39.30	-1	652511..653398	-	295	119872231	-	Pisl_0717	-	hypothetical protein
712	 44.85	0	653818..654399	-	193	119872232	-	Pisl_0718	-	phage SPO1 DNA polymerase-related protein
713	 43.60	0	654458..655129	+	223	119872233	-	Pisl_0719	-	hypothetical protein
714	 42.86	0	655167..655334	+	55	119872234	-	Pisl_0720	-	paREP10
715	 43.91	0	655552..656430	-	292	119872235	-	Pisl_0721	-	alpha-L-glutamate ligase
716	 43.80	0	656465..657037	+	190	119872236	-	Pisl_0722	-	hypothetical protein
717	 41.77	0	657016..657513	-	165	119872237	-	Pisl_0723	-	hypothetical protein
718	 43.33	0	657724..658143	+	139	119872238	-	Pisl_0724	-	hypothetical protein
719	 42.09	0	658118..658471	-	117	119872239	-	Pisl_0725	-	transcriptional regulator, TrmB
720	 45.33	0	658465..658956	-	163	119872240	-	Pisl_0726	-	hypothetical protein
721	 38.71	-1	658999..659370	+	123	119872241	-	Pisl_0727	-	hypothetical protein
722	 45.15	0	659400..660440	+	346	119872242	-	Pisl_0728	-	Fis family transcriptional regulator
723	 44.44	0	660437..661273	-	278	119872243	-	Pisl_0729	-	hypothetical protein
724	 43.43	0	661366..661662	+	98	119872244	-	Pisl_0730	-	hypothetical protein
725	 40.62	-1	661654..663081	-	475	119872245	-	Pisl_0731	-	metal dependent phosphohydrolase
726	 44.66	0	663133..664209	+	358	119872246	-	Pisl_0732	-	hypothetical protein
727	 43.79	0	664174..665292	-	372	119872247	-	Pisl_0733	-	tyrosyl-tRNA synthetase
728	 44.64	0	665839..666528	+	229	119872248	-	Pisl_0735	-	hypothetical protein
729	 42.61	0	666507..666851	-	114	119872249	-	Pisl_0736	-	PilT domain-containing protein
730	 44.08	0	666848..667573	-	241	119872250	-	Pisl_0737	-	ATP-NAD/AcoX kinase
731	 47.32	0	667639..669483	-	614	119872251	-	Pisl_0738	-	aldehyde ferredoxin oxidoreductase
732	 44.83	0	669646..670689	+	347	119872252	-	Pisl_0739	-	radical SAM domain-containing protein
733	 59.03	+1	670710..672398	+	562	119872253	-	Pisl_0740	-	dihydroxy-acid dehydratase
734	 57.38	+1	672519..672755	-	78	119872254	-	Pisl_0741	-	hypothetical protein
735	 62.28	+1	672731..673345	-	204	119872255	-	Pisl_0742	-	hypothetical protein
736	 57.40	+1	673478..674437	+	319	119872256	-	Pisl_0743	-	hypothetical protein
737	 53.37	0	674748..675890	+	380	119872257	-	Pisl_0744	-	proteinase inhibitor I4, serpin
738	 46.04	0	675902..676570	-	222	119872258	-	Pisl_0745	-	hypothetical protein
739	 63.23	+1	676586..677896	-	436	119872259	-	Pisl_0746	-	hypothetical protein
740	 58.95	+1	677952..678560	+	202	119872260	-	Pisl_0747	-	methyltransferase small
741	 50.44	0	680147..681169	+	340	119872261	-	Pisl_0749	-	band 7 protein
742	 48.97	0	681166..681504	+	112	119872262	-	Pisl_0750	-	hypothetical protein
743	 49.81	0	681505..682020	-	171	119872263	-	Pisl_0751	-	hypothetical protein
744	 44.06	0	682383..683417	+	344	119872264	-	Pisl_0752	-	small GTP-binding protein
745	 52.15	0	683420..684466	-	348	119872265	-	Pisl_0753	-	RNA 3'-terminal-phosphate cyclase
746	 46.57	0	684523..685134	+	203	119872266	-	Pisl_0754	-	proteasome endopeptidase complex
747	 47.51	0	685136..686038	-	300	119872267	-	Pisl_0755	-	electron transfer flavoprotein, alpha subunit
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.