IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
504	 44.25	0	475994..476845	-	283	119872024	-	Pisl_0510	-	xylose isomerase domain-containing protein
505	 44.07	0	476873..478111	+	412	119872025	-	Pisl_0511	-	pseudouridylate synthase
506	 43.23	0	478150..478947	+	265	119872026	-	Pisl_0512	-	hypothetical protein
507	 50.11	0	479079..479513	+	144	119872027	rpl14p	Pisl_0513	-	50S ribosomal protein L14P
508	 40.67	-1	479583..479909	+	108	119872028	-	Pisl_0514	-	hypothetical protein
509	 40.17	-1	479888..480238	+	116	119872029	-	Pisl_0515	-	hypothetical protein
510	 47.48	0	480686..482014	-	442	119872030	-	Pisl_0516	-	S-adenosyl-L-homocysteine hydrolase
511	 47.75	0	482050..482895	+	281	119872031	-	Pisl_0517	-	hypothetical protein
512	 43.66	0	482900..483325	+	141	119872032	-	Pisl_0518	-	hypothetical protein
513	 44.29	0	483331..483996	+	221	119872033	-	Pisl_0519	-	B3/4 domain-containing protein
514	 43.86	0	483988..485289	-	433	119872034	-	Pisl_0520	-	hypothetical protein
515	 43.50	0	485366..485965	+	199	119872035	-	Pisl_0521	-	hypothetical protein
516	 47.41	0	485927..486409	-	160	119872036	-	Pisl_0522	-	hypothetical protein
517	 40.07	-1	486406..486954	-	182	119872037	-	Pisl_0523	-	thiol:disulphide interchange protein, putative
518	 41.06	-1	487027..487764	+	245	119872038	-	Pisl_0524	-	hypothetical protein
519	 60.28	+1	487836..490370	+	844	119872039	-	Pisl_0525	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
520	 41.35	-1	490417..490890	+	157	119872040	-	Pisl_0526	-	hypothetical protein
521	 42.70	0	490950..491216	+	88	119872041	-	Pisl_0527	-	hypothetical protein
522	 44.47	0	491248..492594	+	448	119872042	-	Pisl_0528	-	seryl-tRNA synthetase
523	 39.64	-1	492694..493200	+	168	119872043	-	Pisl_0529	-	hypothetical protein
524	 44.80	0	493197..493850	+	217	119872044	pyrH	Pisl_0530	-	uridylate kinase
525	 41.79	0	493970..494383	+	137	119872045	-	Pisl_0531	-	histidine triad (HIT) protein
526	 43.51	0	494415..494876	+	153	119872046	-	Pisl_0532	-	bacterio-opsin activator
527	 45.85	0	494877..496082	-	401	119872047	-	Pisl_0533	-	translation-associated GTPase
528	 44.61	0	496100..497323	+	407	119872048	-	Pisl_0534	-	hypothetical protein
529	 44.11	0	497353..499329	+	658	119872049	-	Pisl_0535	-	CBS domain-containing protein
530	 50.16	0	499363..501579	+	738	119872050	-	Pisl_0536	-	AAA family ATPase, CDC48 subfamily protein
531	 43.49	0	501612..502133	+	173	119872051	-	Pisl_0537	-	heat shock protein Hsp20
532	 43.78	0	502130..502579	-	149	119872052	-	Pisl_0538	-	hypothetical protein
533	 44.72	0	502645..503733	+	362	119872053	-	Pisl_0539	-	THUMP domain-containing protein
534	 50.48	0	503768..504187	+	139	119872054	rps11p	Pisl_0540	-	30S ribosomal protein S11P
535	 37.73	-1	504187..504459	+	90	119872055	-	Pisl_0541	-	hypothetical protein
536	 45.11	0	504558..505712	+	384	119872056	-	Pisl_0542	-	radical SAM domain-containing protein
537	 39.85	-1	505732..506391	+	219	119872057	-	Pisl_0543	-	hypothetical protein
538	 42.08	0	506392..507168	+	258	119872058	-	Pisl_0544	-	hypothetical protein
539	 43.45	0	507125..507796	-	223	119872059	-	Pisl_0545	-	hypothetical protein
540	 43.10	0	507835..508008	-	57	119872060	-	Pisl_0546	-	paREP4
541	 38.18	-1	508260..508589	+	109	119872061	-	Pisl_0547	-	hypothetical protein
542	 39.81	-1	508830..509354	-	174	119872062	-	Pisl_0548	-	putative NTPase
543	 40.18	-1	509398..510186	-	262	119872063	-	Pisl_0549	-	polyprenyl synthetase
544	 39.68	-1	510233..510421	-	62	119872064	-	Pisl_0550	-	hypothetical protein
545	 43.04	0	510483..510956	+	157	119872065	ribH	Pisl_0551	-	riboflavin synthase subunit beta
546	 46.08	0	510966..511961	-	331	119872066	-	Pisl_0552	-	ketol-acid reductoisomerase
547	 38.96	-1	511974..512204	-	76	119872067	-	Pisl_0553	-	acetolactate synthase small subunit
548	 45.13	0	512197..513840	-	547	119872068	-	Pisl_0554	-	acetolactate synthase, large subunit, biosynthetic type
549	 41.33	-1	513984..514433	-	149	119872069	-	Pisl_0555	-	NUDIX hydrolase
550	 39.72	-1	514478..514978	+	166	119872070	-	Pisl_0556	-	hypothetical protein
551	 43.22	0	514952..515224	-	90	119872071	-	Pisl_0557	-	hypothetical protein
552	 43.62	0	515429..516721	-	430	119872072	-	Pisl_0558	-	beta-lactamase domain-containing protein
553	 40.32	-1	516932..517303	+	123	119872073	rpl24p	Pisl_0559	-	50S ribosomal protein L24P
554	 39.19	-1	517306..518022	+	238	119872074	-	Pisl_0560	-	30S ribosomal protein S4e
555	 43.36	0	518019..518447	-	142	119872075	-	Pisl_0561	-	hypothetical protein
556	 41.98	0	518471..519442	-	323	119872076	-	Pisl_0562	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
557	 39.63	-1	519444..520412	-	322	119872077	-	Pisl_0563	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
558	 39.43	-1	520461..521231	+	256	119872078	-	Pisl_0564	-	ribokinase-like domain-containing protein
559	 39.95	-1	521209..522069	-	286	119872079	-	Pisl_0565	-	signal transduction protein
560	 40.48	-1	522229..523152	+	307	119872080	-	Pisl_0566	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
561	 42.93	0	523149..524159	+	336	119872081	-	Pisl_0567	-	aminotransferase, class V
562	 42.26	0	524149..524943	+	264	119872082	-	Pisl_0568	-	hypothetical protein
563	 38.78	-1	524927..525367	-	146	119872083	-	Pisl_0569	-	hypothetical protein
564	 41.53	-1	525383..526639	-	418	119872084	-	Pisl_0570	-	tRNA CCA-pyrophosphorylase
565	 37.41	-1	526636..527199	-	187	119872085	-	Pisl_0571	-	2'-5' RNA ligase
566	 42.63	0	527196..527636	-	146	119872086	-	Pisl_0572	-	MarR family transcriptional regulator
567	 44.15	0	527673..528569	-	298	119872087	-	Pisl_0573	-	zinc finger TFIIB-type domain-containing protein
568	 38.21	-1	528566..528811	-	81	119872088	-	Pisl_0574	-	H/ACA RNA-protein complex component Gar1
569	 44.95	0	529357..529752	+	131	119872089	-	Pisl_0575	-	30S ribosomal protein S8e
570	 44.79	0	529749..530036	+	95	119872090	-	Pisl_0576	-	ribonucleoprotein complex SRP, Srp19 component
571	 43.07	0	530036..530785	+	249	119872091	-	Pisl_0577	-	GTPase
572	 43.56	0	530770..531072	-	100	119872092	-	Pisl_0578	-	50S ribosomal protein L21e
573	 35.42	-1	531151..531486	+	111	119872093	-	Pisl_0579	-	RNA polymerase Rpb4
574	 40.99	-1	531483..532070	+	195	119872094	-	Pisl_0580	-	putative nucleotide binding protein
575	 45.86	0	532599..532997	-	132	119872095	-	Pisl_0581	-	translation initiation factor IF-5A
576	 44.01	0	533028..533870	-	280	119872096	-	Pisl_0582	-	5'-methylthioadenosine phosphorylase II
577	 40.08	-1	533902..534390	+	162	119872097	-	Pisl_0583	-	hypothetical protein
578	 41.60	-1	534417..534779	+	120	119872098	-	Pisl_0584	-	translation initiation factor SUI1
579	 42.00	0	535037..535555	-	172	119872099	-	Pisl_0585	-	hypothetical protein
580	 42.76	0	535588..537486	-	632	119872100	argS	Pisl_0586	-	arginyl-tRNA synthetase
581	 45.30	0	537687..537920	+	77	119872101	rps28e	Pisl_0587	-	30S ribosomal protein S28e
582	 42.94	0	537917..538093	+	58	119872102	-	Pisl_0588	-	ribosomal protein L24E
583	 45.29	0	538094..538603	-	169	119872103	rpl7ae	Pisl_0589	-	50S ribosomal protein L7Ae
584	 41.58	-1	539040..540131	-	363	119872104	-	Pisl_0590	-	inner-membrane translocator
585	 40.54	-1	540128..541084	-	318	119872105	-	Pisl_0591	-	inner-membrane translocator
586	 54.17	0	541191..542534	+	447	119872106	-	Pisl_0592	-	extracellular ligand-binding receptor
587	 44.40	0	542563..543330	+	255	119872107	-	Pisl_0593	-	ABC transporter related
588	 48.04	0	543742..544836	+	364	119872108	-	Pisl_0594	-	major facilitator transporter
589	 45.71	0	544818..545237	+	139	119872109	-	Pisl_0595	-	hypothetical protein
590	 41.25	-1	545312..546157	+	281	119872110	-	Pisl_0596	-	putative circadian clock protein, KaiC
591	 43.16	0	546184..547485	+	433	119872111	-	Pisl_0597	-	GTP-binding signal recognition particle
592	 44.15	0	547500..547952	+	150	119872112	-	Pisl_0598	-	hypothetical protein
593	 40.74	-1	547973..549214	+	413	119872113	-	Pisl_0599	-	THUMP domain-containing protein
594	 44.66	0	549242..550759	+	505	119872114	guaA	Pisl_0600	-	bifunctional GMP synthase/glutamine amidotransferase protein
595	 48.74	0	550889..552277	+	462	119872115	-	Pisl_0601	-	gamma-glutamyltransferase
596	 47.92	0	552674..554311	+	545	119872116	-	Pisl_0602	-	extracellular solute-binding protein
597	 45.88	0	554308..555096	-	262	119872117	-	Pisl_0603	-	binding-protein-dependent transport systems inner membrane component
598	 41.32	-1	555093..556106	-	337	119872118	-	Pisl_0604	-	binding-protein-dependent transport systems inner membrane component
599	 60.88	+1	556494..556856	+	120	119872119	-	Pisl_0605	-	hypothetical protein
600	 51.98	0	556904..557584	+	226	119872120	-	Pisl_0606	-	hypothetical protein
601	 55.47	0	557586..557978	+	130	119872121	-	Pisl_0607	-	hypothetical protein
602	 41.79	0	558305..558895	+	196	119872122	-	Pisl_0608	-	ribosomal protein L6
603	 44.60	0	559110..559979	-	289	119872123	-	Pisl_0609	-	4-hydroxybenzoate polyprenyltransferase, putative
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.