IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
439	 47.24	0	425366..426595	+	409	119871959	-	Pisl_0445	-	MoeA domain-containing protein
440	 43.10	0	426566..427282	-	238	119871960	-	Pisl_0446	-	phosphoribosyltransferase
441	 43.20	0	427292..428305	-	337	119871961	-	Pisl_0447	-	hypothetical protein
442	 39.53	-1	428581..428967	-	128	119871962	-	Pisl_0448	-	zinc finger SWIM domain-containing protein
443	 42.23	0	428951..429703	-	250	119871963	-	Pisl_0449	-	inositol monophosphatase
444	 39.50	-1	429910..430266	-	118	119871964	-	Pisl_0450	-	hypothetical protein
445	 42.39	0	430372..430857	-	161	119871965	-	Pisl_0451	-	hypothetical protein
446	 42.25	0	430879..431304	-	141	119871966	-	Pisl_0452	-	hypothetical protein
447	 47.50	0	431740..431979	+	79	119871967	-	Pisl_0453	-	deoxyribonuclease
448	 53.86	0	431972..433111	-	379	119871968	-	Pisl_0454	-	tryptophanyl-tRNA synthetase
449	 46.14	0	433143..433907	-	254	119871969	-	Pisl_0455	-	HhH-GPD family protein
450	 45.38	0	433904..434683	-	259	119871970	-	Pisl_0456	-	radical SAM domain-containing protein
451	 42.39	0	435128..435403	+	91	119871971	-	Pisl_0457	-	ribosomal protein L31e
452	 47.15	0	435400..436065	+	221	119871972	-	Pisl_0458	-	translation initiation factor IF-6
453	 41.77	0	436373..436609	+	78	119871973	-	Pisl_0459	-	ribosomal LX protein
454	 42.36	0	436611..437009	+	132	119871974	-	Pisl_0460	-	prefoldin subunit alpha
455	 42.64	0	437009..437932	+	307	119871975	-	Pisl_0461	-	signal recognition particle-docking protein FtsY
456	 42.00	0	438423..438722	+	99	119871976	-	Pisl_0462	-	hypothetical protein
457	 44.73	0	438722..439186	+	154	119871977	nusG	Pisl_0463	-	transcription antitermination protein NusG
458	 39.29	-1	439217..439720	+	167	119871978	-	Pisl_0464	-	ribosomal protein L11
459	 43.80	0	439717..440385	+	222	119871979	rpl1P	Pisl_0465	-	50S ribosomal protein L1P
460	 43.70	0	440417..441448	+	343	119871980	rplP0	Pisl_0466	-	acidic ribosomal protein P0
461	 45.50	0	441449..442393	+	314	119871981	-	Pisl_0467	-	mevalonate kinase
462	 45.68	0	442390..442632	+	80	119871982	-	Pisl_0468	-	hypothetical protein
463	 48.60	0	442641..443426	+	261	119871983	-	Pisl_0469	-	uridine phosphorylase
464	 42.62	0	443398..443634	+	78	119871984	-	Pisl_0470	-	hypothetical protein
465	 43.82	0	443659..444087	+	142	119871985	-	Pisl_0471	-	hypothetical protein
466	 40.80	-1	444084..444431	-	115	119871986	-	Pisl_0472	-	heat shock protein Hsp20
467	 47.44	0	444458..445357	-	299	119871987	-	Pisl_0473	-	inner-membrane translocator
468	 44.08	0	445354..446358	-	334	119871988	-	Pisl_0474	-	inner-membrane translocator
469	 44.03	0	446355..447794	-	479	119871989	-	Pisl_0475	-	ABC transporter related
470	 45.76	0	447795..449009	-	404	119871990	-	Pisl_0476	-	basic membrane lipoprotein
471	 44.98	0	449165..449473	+	102	119871991	-	Pisl_0477	-	hypothetical protein
472	 42.90	0	449473..449775	+	100	119871992	-	Pisl_0478	-	hypothetical protein
473	 47.53	0	449762..449923	-	53	119871993	rpl40e	Pisl_0479	-	50S ribosomal protein L40e
474	 43.65	0	450059..451978	+	639	119871994	-	Pisl_0480	-	hypothetical protein
475	 42.16	0	451975..452382	-	135	119871995	-	Pisl_0481	-	hypothetical protein
476	 45.26	0	452529..453098	+	189	119871996	-	Pisl_0482	-	hypothetical protein
477	 45.92	0	453095..453817	-	240	119871997	-	Pisl_0483	-	hypothetical protein
478	 47.04	0	453898..455283	+	461	119871998	-	Pisl_0484	-	CoA-binding domain-containing protein
479	 46.21	0	455280..455978	+	232	119871999	-	Pisl_0485	-	hypothetical protein
480	 47.22	0	456140..457075	-	311	119872000	-	Pisl_0486	-	Rad51-like protein
481	 49.48	0	457080..457463	-	127	119872001	-	Pisl_0487	-	hypothetical protein
482	 50.00	0	457541..458068	-	175	119872002	-	Pisl_0488	-	GCN5-related N-acetyltransferase
483	 47.12	0	458056..458889	-	277	119872003	-	Pisl_0489	-	aldo/keto reductase
484	 43.10	0	459233..459406	+	57	119872004	-	Pisl_0490	-	paREP4
485	 41.49	-1	459428..460420	-	330	119872005	-	Pisl_0491	-	eRF1 domain-containing 1 protein
486	 37.82	-1	460558..460713	+	51	119872006	-	Pisl_0492	-	hypothetical protein
487	 40.61	-1	460703..461320	-	205	119872007	-	Pisl_0493	-	hypothetical protein
488	 43.98	0	461344..461850	-	168	119872008	-	Pisl_0494	-	hypothetical protein
489	 44.92	0	461847..462554	-	235	119872009	-	Pisl_0495	-	hypothetical protein
490	 47.26	0	462601..463950	+	449	119872010	-	Pisl_0496	-	UDP-glucose/GDP-mannose dehydrogenase
491	 41.80	0	463947..464501	-	184	119872011	-	Pisl_0497	-	pyruvate/ketoisovalerate oxidoreductase, gamma subunit
492	 44.98	0	464641..464889	+	82	119872012	-	Pisl_0498	-	pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
493	 44.42	0	464886..466040	+	384	119872013	-	Pisl_0499	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
494	 48.01	0	466037..466942	+	301	119872014	-	Pisl_0500	-	2-ketoisovalerate ferredoxin oxidoreductase subunit beta
495	 45.34	0	466985..468667	+	560	119872015	-	Pisl_0501	-	thermosome
496	 44.85	0	468717..469046	+	109	119872016	rpoK	Pisl_0502	-	DNA-directed RNA polymerase subunit K
497	 42.66	0	469236..469964	-	242	119872017	-	Pisl_0503	-	ABC transporter related
498	 46.44	0	470104..471354	+	416	119872018	-	Pisl_0504	-	extracellular ligand-binding receptor
499	 44.19	0	471697..472212	+	171	119872019	-	Pisl_0505	-	aspartate carbamoyltransferase regulatory subunit
500	 42.78	0	472209..472790	+	193	119872020	pyrE	Pisl_0506	-	orotate phosphoribosyltransferase
501	 43.32	0	472778..473668	+	296	119872021	-	Pisl_0507	-	dihydroorotate dehydrogenase
502	 42.58	0	473640..474050	-	136	119872022	-	Pisl_0508	-	hypothetical protein
503	 44.41	0	474122..475963	-	613	119872023	-	Pisl_0509	-	hypothetical protein
504	 44.25	0	475994..476845	-	283	119872024	-	Pisl_0510	-	xylose isomerase domain-containing protein
505	 44.07	0	476873..478111	+	412	119872025	-	Pisl_0511	-	pseudouridylate synthase
506	 43.23	0	478150..478947	+	265	119872026	-	Pisl_0512	-	hypothetical protein
507	 50.11	0	479079..479513	+	144	119872027	rpl14p	Pisl_0513	-	50S ribosomal protein L14P
508	 40.67	-1	479583..479909	+	108	119872028	-	Pisl_0514	-	hypothetical protein
509	 40.17	-1	479888..480238	+	116	119872029	-	Pisl_0515	-	hypothetical protein
510	 47.48	0	480686..482014	-	442	119872030	-	Pisl_0516	-	S-adenosyl-L-homocysteine hydrolase
511	 47.75	0	482050..482895	+	281	119872031	-	Pisl_0517	-	hypothetical protein
512	 43.66	0	482900..483325	+	141	119872032	-	Pisl_0518	-	hypothetical protein
513	 44.29	0	483331..483996	+	221	119872033	-	Pisl_0519	-	B3/4 domain-containing protein
514	 43.86	0	483988..485289	-	433	119872034	-	Pisl_0520	-	hypothetical protein
515	 43.50	0	485366..485965	+	199	119872035	-	Pisl_0521	-	hypothetical protein
516	 47.41	0	485927..486409	-	160	119872036	-	Pisl_0522	-	hypothetical protein
517	 40.07	-1	486406..486954	-	182	119872037	-	Pisl_0523	-	thiol:disulphide interchange protein, putative
518	 41.06	-1	487027..487764	+	245	119872038	-	Pisl_0524	-	hypothetical protein
519	 60.28	+1	487836..490370	+	844	119872039	-	Pisl_0525	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
520	 41.35	-1	490417..490890	+	157	119872040	-	Pisl_0526	-	hypothetical protein
521	 42.70	0	490950..491216	+	88	119872041	-	Pisl_0527	-	hypothetical protein
522	 44.47	0	491248..492594	+	448	119872042	-	Pisl_0528	-	seryl-tRNA synthetase
523	 39.64	-1	492694..493200	+	168	119872043	-	Pisl_0529	-	hypothetical protein
524	 44.80	0	493197..493850	+	217	119872044	pyrH	Pisl_0530	-	uridylate kinase
525	 41.79	0	493970..494383	+	137	119872045	-	Pisl_0531	-	histidine triad (HIT) protein
526	 43.51	0	494415..494876	+	153	119872046	-	Pisl_0532	-	bacterio-opsin activator
527	 45.85	0	494877..496082	-	401	119872047	-	Pisl_0533	-	translation-associated GTPase
528	 44.61	0	496100..497323	+	407	119872048	-	Pisl_0534	-	hypothetical protein
529	 44.11	0	497353..499329	+	658	119872049	-	Pisl_0535	-	CBS domain-containing protein
530	 50.16	0	499363..501579	+	738	119872050	-	Pisl_0536	-	AAA family ATPase, CDC48 subfamily protein
531	 43.49	0	501612..502133	+	173	119872051	-	Pisl_0537	-	heat shock protein Hsp20
532	 43.78	0	502130..502579	-	149	119872052	-	Pisl_0538	-	hypothetical protein
533	 44.72	0	502645..503733	+	362	119872053	-	Pisl_0539	-	THUMP domain-containing protein
534	 50.48	0	503768..504187	+	139	119872054	rps11p	Pisl_0540	-	30S ribosomal protein S11P
535	 37.73	-1	504187..504459	+	90	119872055	-	Pisl_0541	-	hypothetical protein
536	 45.11	0	504558..505712	+	384	119872056	-	Pisl_0542	-	radical SAM domain-containing protein
537	 39.85	-1	505732..506391	+	219	119872057	-	Pisl_0543	-	hypothetical protein
538	 42.08	0	506392..507168	+	258	119872058	-	Pisl_0544	-	hypothetical protein
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.