IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
325	 53.19	0	328888..330111	+	407	119871845	-	Pisl_0331	-	NADH dehydrogenase (ubiquinone)
326	 52.96	0	330113..330382	+	89	119871846	-	Pisl_0332	-	hypothetical protein
327	 54.81	0	330552..331808	-	418	119871847	-	Pisl_0333	-	transposase, IS605 OrfB
328	 49.35	0	332595..332825	+	76	119871848	-	Pisl_0334	-	hypothetical protein
329	 54.12	0	333207..333740	-	177	119871849	-	Pisl_0335	-	NADH dehydrogenase (ubiquinone), 30 kDa subunit
330	 52.17	0	333742..334293	-	183	119871850	-	Pisl_0336	-	NADH-quinone oxidoreductase, B subunit
331	 54.02	0	334617..334877	-	86	119871851	-	Pisl_0337	-	hypothetical protein
332	 47.25	0	335307..336362	-	351	119871852	-	Pisl_0338	-	alcohol dehydrogenase
333	 41.83	0	336359..336805	-	148	119871853	-	Pisl_0339	-	hypothetical protein
334	 40.71	-1	337099..337857	-	252	119871854	-	Pisl_0340	-	hypothetical protein
335	 45.77	0	337884..338438	+	184	119871855	-	Pisl_0341	-	THUMP domain-containing protein
336	 49.66	0	338435..339022	+	195	119871856	-	Pisl_0342	-	hypothetical protein
337	 46.33	0	338996..339895	-	299	119871857	-	Pisl_0343	-	dihydropteroate synthase
338	 38.94	-1	339927..340229	+	100	119871858	-	Pisl_0344	-	hypothetical protein
339	 47.12	0	340253..341500	+	415	119871859	-	Pisl_0345	-	RNA modification protein
340	 46.48	0	341497..343200	-	567	119871860	-	Pisl_0346	-	methionyl-tRNA synthetase
341	 48.47	0	343226..343846	-	206	119871861	-	Pisl_0347	-	hypothetical protein
342	 43.51	0	343853..344569	-	238	119871862	-	Pisl_0348	-	undecaprenyl diphosphate synthase
343	 48.32	0	344547..344873	-	108	119871863	-	Pisl_0349	-	tRNA-binding domain-containing protein
344	 44.44	0	344897..345292	-	131	119871864	-	Pisl_0350	-	hypothetical protein
345	 43.57	0	345298..347709	-	803	119871865	-	Pisl_0351	-	hypothetical protein
346	 43.03	0	347771..348523	+	250	119871866	-	Pisl_0352	-	HAD family hydrolase
347	 45.88	0	348510..349274	-	254	119871867	-	Pisl_0353	-	hypothetical protein
348	 44.59	0	349271..349501	-	76	119871868	-	Pisl_0354	-	hypothetical protein
349	 44.34	0	349511..349819	-	102	119871869	-	Pisl_0355	-	hypothetical protein
350	 47.41	0	349872..351008	+	378	119871870	-	Pisl_0356	-	hypothetical protein
351	 43.67	0	351417..352229	+	270	119871871	-	Pisl_0357	-	extracellular solute-binding protein
352	 41.86	0	352214..352600	+	128	119871872	-	Pisl_0358	-	hypothetical protein
353	 56.60	+1	352977..353681	+	234	119871873	-	Pisl_0359	-	hypothetical protein
354	 52.74	0	353766..354002	+	78	119871874	-	Pisl_0360	-	hypothetical protein
355	 46.35	0	354470..355099	+	209	119871875	-	Pisl_0361	-	hypothetical protein
356	 47.41	0	355099..355794	+	231	119871876	-	Pisl_0362	-	NAD-dependent deacetylase
357	 40.46	-1	355775..356293	-	172	119871877	-	Pisl_0363	-	hypothetical protein
358	 40.00	-1	356290..356709	-	139	119871878	-	Pisl_0364	-	signal-transduction protein
359	 41.82	0	356737..357066	-	109	119871879	-	Pisl_0365	-	hypothetical protein
360	 46.48	0	357063..357488	-	141	119871880	-	Pisl_0366	-	hypothetical protein
361	 39.86	-1	357485..357622	-	45	119871881	-	Pisl_0367	-	hypothetical protein
362	 41.31	-1	357619..357831	-	70	119871882	-	Pisl_0368	-	hypothetical protein
363	 55.26	0	358146..358706	-	186	119871883	-	Pisl_0369	-	paREP12
364	 46.35	0	358856..359539	+	227	119871884	-	Pisl_0370	-	nucleotidyl transferase
365	 46.12	0	359529..361241	+	570	119871885	gltX	Pisl_0371	-	glutamyl-tRNA synthetase
366	 43.51	0	361234..362235	+	333	119871886	-	Pisl_0372	-	hypothetical protein
367	 40.36	-1	362265..362648	+	127	119871887	-	Pisl_0373	-	hypothetical protein
368	 41.13	-1	362626..363087	-	153	119871888	-	Pisl_0374	-	hypothetical protein
369	 43.60	0	363173..364468	-	431	119871889	-	Pisl_0375	-	asparaginyl-tRNA synthetase
370	 44.71	0	364468..364722	-	84	119871890	-	Pisl_0376	-	hypothetical protein
371	 46.10	0	364719..365525	-	268	119871891	-	Pisl_0377	-	6-phosphogluconate dehydrogenase, NAD-binding
372	 48.38	0	365572..366621	+	349	119871892	-	Pisl_0378	-	Sua5/YciO/YrdC/YwlC family protein
373	 43.54	0	366596..367369	+	257	119871893	-	Pisl_0379	-	methyltransferase type 11
374	 44.76	0	367398..368255	+	285	119871894	-	Pisl_0380	-	ribose-phosphate pyrophosphokinase
375	 47.68	0	368250..369260	-	336	119871895	-	Pisl_0381	-	histone deacetylase superfamily protein
376	 37.10	-1	369320..369505	+	61	119871896	-	Pisl_0382	-	hypothetical protein
377	 45.57	0	369502..370122	-	206	119871897	-	Pisl_0383	-	creatininase
378	 43.24	0	370211..370876	+	221	119871898	-	Pisl_0384	-	GTP cyclohydrolase IIA
379	 45.87	0	370873..371526	+	217	119871899	-	Pisl_0385	-	hypothetical protein
380	 46.11	0	371566..372207	+	213	119871900	-	Pisl_0386	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
381	 40.14	-1	372530..372955	-	141	119871901	-	Pisl_0387	-	hypothetical protein
382	 47.93	0	373013..374101	+	362	119871902	-	Pisl_0388	-	geranylgeranyl reductase
383	 45.74	0	374090..375250	-	386	119871903	-	Pisl_0389	-	nicotinate phosphoribosyltransferase
384	 40.33	-1	375283..377025	+	580	119871904	-	Pisl_0390	-	DEAD_2 domain-containing protein
385	 52.94	0	376997..377455	-	152	119871905	-	Pisl_0391	-	hypothetical protein
386	 42.87	0	377524..379338	+	604	119871906	-	Pisl_0392	-	DNA topoisomerase
387	 45.50	0	379325..380236	+	303	119871907	-	Pisl_0393	-	diphthamide biosynthesis protein
388	 34.65	-1	380301..380603	+	100	119871908	-	Pisl_0394	-	hypothetical protein
389	 44.40	0	381080..382651	+	523	119871909	-	Pisl_0395	-	hypothetical protein
390	 48.60	0	382868..383260	+	130	119871910	-	Pisl_0396	-	hypothetical protein
391	 44.87	0	383289..384623	-	444	119871911	-	Pisl_0397	-	elongation factor 1-alpha
392	 48.63	0	384703..384957	+	84	119871912	-	Pisl_0398	-	ribosomal protein L34e
393	 42.52	0	384964..385518	+	184	119871913	-	Pisl_0399	-	cytidylate kinase
394	 49.81	0	385571..386620	+	349	119871914	-	Pisl_0400	-	putative glutamate synthase subunit beta
395	 44.35	0	386621..387328	-	235	119871915	-	Pisl_0401	-	fibrillarin
396	 47.19	0	387381..388643	-	420	119871916	-	Pisl_0402	-	Pre-mRNA processing ribonucleoprotein, binding region
397	 47.75	0	388665..390488	-	607	119871917	-	Pisl_0403	-	glutamyl-tRNA(Gln) amidotransferase subunit E
398	 48.31	0	390521..391228	+	235	119871918	-	Pisl_0404	-	dimethyladenosine transferase
399	 48.84	0	391216..392079	+	287	119871919	-	Pisl_0405	-	beta-lactamase domain-containing protein
400	 47.66	0	392069..392815	-	248	119871920	-	Pisl_0406	-	methyltransferase type 11
401	 52.14	0	392812..394374	-	520	119871921	-	Pisl_0407	-	ATPase
402	 52.64	0	394413..395417	+	334	119871922	-	Pisl_0408	-	putative RNA methylase
403	 48.28	0	395918..396787	-	289	119871923	-	Pisl_0409	-	hypothetical protein
404	 47.65	0	396784..398334	-	516	119871924	-	Pisl_0410	-	XRE family transcriptional regulator
405	 60.53	+1	398757..400109	-	450	119871925	-	Pisl_0411	-	hypothetical protein
406	 60.61	+1	400162..400821	-	219	119871926	-	Pisl_0412	-	hypothetical protein
407	 59.57	+1	400802..401407	-	201	119871927	-	Pisl_0413	-	isochorismatase hydrolase
408	 53.60	0	401455..401829	+	124	119871928	-	Pisl_0414	-	putative endoribonuclease L-PSP
409	 62.22	+1	401852..402166	+	104	119871929	-	Pisl_0415	-	hypothetical protein
410	 59.87	+1	402145..402762	+	205	119871930	-	Pisl_0416	-	hypothetical protein
411	 49.60	0	402980..403231	+	83	119871931	-	Pisl_0417	-	hypothetical protein
412	 60.39	+1	403466..403879	+	137	119871932	-	Pisl_0418	-	hypothetical protein
413	 55.43	0	404415..404690	-	91	119871933	-	Pisl_0419	-	hypothetical protein
414	 62.50	+1	404662..405309	-	215	119871934	-	Pisl_0420	-	hypothetical protein
415	 59.25	+1	405384..406178	-	264	119871935	-	Pisl_0421	-	hypothetical protein
416	 53.54	0	406228..407781	-	517	119871936	-	Pisl_0422	-	hypothetical protein
417	 62.05	+1	408124..408600	-	158	119871937	-	Pisl_0423	-	hypothetical protein
418	 68.99	+2	408681..408938	-	85	119871938	-	Pisl_0424	-	carbon nitrogen hydrolase, conjectural
419	 58.92	+1	409947..410708	+	253	119871939	-	Pisl_0425	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
420	 57.87	+1	410714..411202	+	162	119871940	-	Pisl_0426	-	hypothetical protein
421	 50.55	0	411366..412457	-	363	119871941	-	Pisl_0427	-	nucleotidyl transferase
422	 49.39	0	412459..414270	-	603	119871942	-	Pisl_0428	-	D-fructose-6-phosphate amidotransferase
423	 48.58	0	414412..415362	-	316	119871943	-	Pisl_0429	-	Fis family transcriptional regulator
424	 47.40	0	415421..415939	+	172	119871944	-	Pisl_0430	-	hypothetical protein
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.