IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
147	 46.10	0	142400..143323	-	307	119871667	-	Pisl_0148	-	hypothetical protein
148	 55.56	0	144165..144596	+	143	119871668	-	Pisl_0149	-	hypothetical protein
149	 57.43	+1	144693..145775	-	360	119871669	-	Pisl_0150	-	ATPase
150	 64.71	+2	146045..146401	-	118	119871670	-	Pisl_0151	-	hypothetical protein
151	 50.47	0	146625..147155	-	176	119871671	-	Pisl_0152	-	hypothetical protein
152	 46.80	0	147206..148096	-	296	119871672	-	Pisl_0153	-	beta-lactamase domain-containing protein
153	 48.74	0	149061..149456	-	131	119871673	-	Pisl_0155	-	thioesterase superfamily protein
154	 46.32	0	149600..150184	+	194	119871674	-	Pisl_0156	-	hypothetical protein
155	 57.91	+1	150498..150851	-	117	119871675	-	Pisl_0157	-	hypothetical protein
156	 55.70	0	150964..151200	-	78	119871676	-	Pisl_0158	-	transposase, IS605 OrfB
157	 59.19	+1	151237..151905	-	222	119871677	-	Pisl_0159	-	CRISPR-associated Cas family protein
158	 52.25	0	152357..153133	-	258	119871678	-	Pisl_0160	-	formate dehydrogenase, cytochrome b556 subunit (formate dehydrogenase gamma subunit)
159	 44.80	0	153100..153762	-	220	119871679	-	Pisl_0161	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
160	 51.94	0	153759..156176	-	805	119871680	-	Pisl_0162	-	molybdopterin oxidoreductase
161	 52.65	0	156347..156874	+	175	119871681	-	Pisl_0163	-	hypothetical protein
162	 40.92	-1	156891..157457	+	188	119871682	-	Pisl_0164	-	hypothetical protein
163	 45.25	0	157477..157929	+	150	119871683	-	Pisl_0165	-	hypothetical protein
164	 48.01	0	158162..158815	-	217	119871684	-	Pisl_0166	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
165	 51.00	0	158894..160297	-	467	119871685	-	Pisl_0167	-	hypothetical protein
166	 48.51	0	160481..160816	-	111	119871686	-	Pisl_0168	-	DsrC family protein
167	 44.88	0	160854..161156	-	100	119871687	-	Pisl_0169	-	hypothetical protein
168	 53.21	0	161239..162375	-	378	119871688	-	Pisl_0170	-	sulfite reductase, dissimilatory-type beta subunit
169	 54.08	0	162372..163610	-	412	119871689	-	Pisl_0171	-	sulfite reductase, dissimilatory-type alpha subunit
170	 46.09	0	163648..164415	-	255	119871690	-	Pisl_0172	-	nitrate reductase, gamma subunit
171	 47.90	0	164601..165506	+	301	119871691	-	Pisl_0173	-	cofactor modifying protein (cmo)
172	 43.29	0	166556..167971	+	471	119871692	-	Pisl_0174	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
173	 37.98	-1	168063..168665	+	200	119871693	-	Pisl_0175	-	hypothetical protein
174	 43.99	0	168662..170266	-	534	119871694	-	Pisl_0176	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
175	 39.60	-1	170263..171171	-	302	119871695	-	Pisl_0177	-	nitrate reductase, gamma subunit
176	 50.89	0	171280..172623	+	447	119871696	-	Pisl_0178	-	cobyrinic acid a,c-diamide synthase
177	 48.58	0	172608..173276	+	222	119871697	-	Pisl_0179	-	uroporphyrin-III C/tetrapyrrole methyltransferase
178	 61.59	+1	174314..175555	+	413	119871698	-	Pisl_0180	-	hypothetical protein
179	 60.66	+1	175582..176430	-	282	119871699	-	Pisl_0181	-	hypothetical protein
180	 63.28	+1	176433..177200	-	255	119871700	-	Pisl_0182	-	ABC transporter related
181	 59.13	+1	177331..177861	+	176	119871701	-	Pisl_0183	-	hypothetical protein
182	 58.64	+1	177858..178181	+	107	119871702	-	Pisl_0184	-	regulatory protein, ArsR
183	 52.23	0	178693..179454	+	253	119871703	-	Pisl_0185	-	paREP7
184	 41.87	0	179462..179824	-	120	119871704	-	Pisl_0186	-	hypothetical protein
185	 51.67	0	180569..180808	+	79	119871705	-	Pisl_0187	-	hypothetical protein
186	 49.81	0	180860..181120	+	86	119871706	-	Pisl_0188	-	ArsR family transcriptional regulator
187	 62.71	+1	181190..182251	-	353	119871707	-	Pisl_0189	-	radical SAM domain-containing protein
188	 47.07	0	182834..183430	-	198	119871708	-	Pisl_0190	-	hypothetical protein
189	 50.28	0	183427..184152	-	241	119871709	-	Pisl_0191	-	hypothetical protein
190	 45.01	0	184149..184559	-	136	119871710	-	Pisl_0192	-	hydrogenase expression/synthesis, HypA
191	 47.12	0	184589..184987	-	132	119871711	-	Pisl_0193	-	CopG family transcriptional regulator
192	 43.93	0	184980..185300	-	106	119871712	-	Pisl_0194	-	hypothetical protein
193	 43.53	0	185297..185551	-	84	119871713	-	Pisl_0195	-	hypothetical protein
194	 47.29	0	185538..186053	-	171	119871714	-	Pisl_0196	-	hydrogenase maturation protease
195	 55.29	0	186053..187969	-	638	119871715	-	Pisl_0197	-	nickel-dependent hydrogenase, large subunit
196	 53.32	0	188031..189326	-	431	119871716	-	Pisl_0198	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
197	 52.33	0	189376..190149	-	257	119871717	-	Pisl_0199	-	hypothetical protein
198	 56.34	+1	190146..191462	-	438	119871718	-	Pisl_0200	-	nickel-dependent hydrogenase small subunit
199	 46.31	0	191449..192072	-	207	119871719	-	Pisl_0201	-	hypothetical protein
200	 56.43	+1	192059..192556	-	165	119871720	-	Pisl_0202	-	hypothetical protein
201	 54.94	0	192610..193641	+	343	119871721	-	Pisl_0203	-	hydrogenase expression/formation protein HypE
202	 53.05	0	193635..194207	+	190	119871722	-	Pisl_0204	-	beta-lactamase fold-like Zn-dependent hydrolase
203	 54.67	0	194309..195508	+	399	119871723	-	Pisl_0205	-	hydrogenase formation HypD protein
204	 50.57	0	195510..195857	+	115	119871724	-	Pisl_0206	-	hypothetical protein
205	 52.02	0	195850..198096	+	748	119871725	-	Pisl_0207	-	(NiFe) hydrogenase maturation protein HypF
206	 50.99	0	198077..198784	+	235	119871726	-	Pisl_0208	-	hypothetical protein
207	 44.78	0	198789..199085	+	98	119871727	-	Pisl_0209	-	hypothetical protein
208	 57.74	+1	199077..199748	-	223	119871728	-	Pisl_0210	-	ABC transporter related
209	 60.34	+1	199729..200313	-	194	119871729	-	Pisl_0211	-	hypothetical protein
210	 53.85	0	200294..200605	-	103	119871730	-	Pisl_0212	-	hypothetical protein
211	 59.44	+1	200602..201210	-	202	119871731	-	Pisl_0213	-	cobalamin (vitamin B12) biosynthesis CbiM protein
212	 59.89	+1	201283..202035	-	250	119871732	-	Pisl_0214	-	ABC transporter related
213	 65.09	+2	202022..203038	-	338	119871733	-	Pisl_0215	-	transport system permease protein
214	 55.67	0	203026..204207	-	393	119871734	-	Pisl_0216	-	periplasmic binding protein
215	 55.92	0	204230..204955	-	241	119871735	-	Pisl_0217	-	hypothetical protein
216	 61.43	+1	204998..206716	-	572	119871736	-	Pisl_0218	-	AMP-dependent synthetase and ligase
217	 59.27	+1	206792..207508	+	238	119871737	-	Pisl_0219	-	formylmethanofuran dehydrogenase, subunit E region
218	 56.01	0	207468..207758	-	96	119871738	-	Pisl_0220	-	hypothetical protein
219	 52.08	0	207768..208562	-	264	119871739	-	Pisl_0221	-	hypothetical protein
220	 58.39	+1	209616..210098	+	160	119871740	-	Pisl_0223	-	PaREP1 domain-containing protein
221	 52.97	0	210696..211301	-	201	119871741	-	Pisl_0224	-	hypothetical protein
222	 58.06	+1	211332..212051	-	239	119871742	-	Pisl_0225	-	anaerobic ribonucleoside-triphosphate reductase activating protein
223	 60.19	+1	212051..213871	-	606	119871743	-	Pisl_0226	-	anaerobic ribonucleoside triphosphate reductase
224	 58.03	+1	213983..216031	-	682	119871744	-	Pisl_0227	-	periplasmic binding protein
225	 51.80	0	216061..219624	-	1187	119871745	-	Pisl_0228	-	cobaltochelatase
226	 59.46	+1	219621..221534	-	637	119871746	-	Pisl_0229	-	magnesium chelatase
227	 55.99	0	225532..227703	+	723	119871747	-	Pisl_0231	-	periplasmic binding protein
228	 56.58	+1	227694..228734	+	346	119871748	-	Pisl_0232	-	transport system permease protein
229	 57.22	+1	228727..229488	+	253	119871749	-	Pisl_0233	-	ABC transporter related
230	 58.53	+1	229481..230377	+	298	119871750	-	Pisl_0234	-	nucleoside recognition domain-containing protein
231	 62.35	+1	230368..231132	+	254	119871751	-	Pisl_0235	-	methyltransferase type 12
232	 58.97	+1	231114..232022	+	302	119871752	-	Pisl_0236	-	nucleoside recognition domain-containing protein
233	 59.09	+1	232261..232920	-	219	119871753	-	Pisl_0237	-	hypothetical protein
234	 54.20	0	233663..234007	+	114	119871754	-	Pisl_0238	-	AbrB family transcriptional regulator
235	 56.58	+1	233979..234434	+	151	119871755	-	Pisl_0239	-	PilT domain-containing protein
236	 63.41	+1	234982..235257	-	91	119871756	-	Pisl_0240	-	hypothetical protein
237	 59.48	+1	235643..236185	-	180	119871757	-	Pisl_0241	-	hypothetical protein
238	 60.22	+1	236163..236348	-	61	119871758	-	Pisl_0242	-	hypothetical protein
239	 53.70	0	236602..237858	-	418	119871759	-	Pisl_0243	-	transposase, IS605 OrfB
240	 60.39	+1	238004..238624	+	206	119871760	-	Pisl_0244	-	hypothetical protein
241	 62.23	+1	238600..239928	-	442	119871761	-	Pisl_0245	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
242	 39.93	-1	239971..240273	-	100	119871762	-	Pisl_0246	-	ferredoxin
243	 56.83	+1	240273..242000	-	575	119871763	sdhA	Pisl_0247	-	succinate dehydrogenase flavoprotein subunit
244	 55.71	0	242084..243580	-	498	119871764	-	Pisl_0248	-	vinylacetyl-CoA delta-isomerase
245	 60.41	+1	243704..245125	+	473	119871765	-	Pisl_0249	-	succinate-semialdehyde dehydrogenase (NAD(P)(+))
246	 60.16	+1	245127..247016	+	629	119871766	-	Pisl_0250	-	AMP-dependent synthetase and ligase
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.