IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1851	 46.83	0	1705291..1707720	-	809	119873371	-	Pisl_1888	-	phosphoenolpyruvate synthase
1852	 48.34	0	1707835..1708527	-	230	119873372	-	Pisl_1889	-	hypothetical protein
1853	 52.38	0	1708598..1709794	+	398	119873373	-	Pisl_1890	-	radical SAM domain-containing protein
1854	 55.14	0	1709752..1710072	-	106	119873374	-	Pisl_1891	-	hypothetical protein
1855	 44.04	0	1710047..1710373	-	108	119873375	-	Pisl_1892	-	hypothetical protein
1856	 52.50	0	1710767..1711768	-	333	119873376	-	Pisl_1893	-	metalloendopeptidase glycoprotease family
1857	 51.96	0	1711768..1711971	-	67	119873377	-	Pisl_1894	-	30S ribosomal protein S27ae
1858	 43.82	0	1711974..1712345	-	123	119873378	-	Pisl_1895	-	Fis family transcriptional regulator
1859	 40.82	-1	1712799..1713239	-	146	119873379	-	Pisl_1896	-	hypothetical protein
1860	 50.34	0	1713521..1714972	+	483	119873380	-	Pisl_1897	-	radical SAM domain-containing protein
1861	 55.27	0	1714937..1715401	-	154	119873381	-	Pisl_1898	-	abortive infection protein
1862	 43.46	0	1715460..1716101	+	213	119873382	-	Pisl_1899	-	hypothetical protein
1863	 48.62	0	1716125..1716994	+	289	119873383	-	Pisl_1900	-	ornithine cyclodeaminase/mu-crystallin
1864	 57.37	+1	1716985..1718340	+	451	119873384	-	Pisl_1901	-	type III restriction enzyme, res subunit
1865	 57.94	+1	1718337..1719470	+	377	119873385	-	Pisl_1902	-	hypothetical protein
1866	 53.52	0	1719464..1720558	-	364	119873386	-	Pisl_1903	-	radical SAM domain-containing protein
1867	 45.37	0	1720584..1720907	-	107	119873387	-	Pisl_1904	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1868	 46.82	0	1721185..1722333	-	382	119873388	-	Pisl_1905	-	hypothetical protein
1869	 47.95	0	1722330..1722500	-	56	119873389	-	Pisl_1906	-	30S ribosomal protein S30e
1870	 58.45	+1	1722782..1724083	-	433	119873390	-	Pisl_1907	-	IS605 family transposase OrfB
1871	 49.65	0	1724650..1725078	-	142	119873391	-	Pisl_1908	-	hypothetical protein
1872	 51.76	0	1725071..1725439	-	122	119873392	-	Pisl_1909	-	hypothetical protein
1873	 57.86	+1	1725430..1726281	-	283	119873393	-	Pisl_1910	-	hypothetical protein
1874	 57.60	+1	1726284..1727585	+	433	119873394	-	Pisl_1911	-	citrate transporter
1875	 61.86	+1	1727574..1728281	-	235	119873395	trpA	Pisl_1912	-	tryptophan synthase subunit alpha
1876	 56.87	+1	1728278..1728859	-	193	119873396	-	Pisl_1913	-	anthranilate synthase component II
1877	 59.97	+1	1728850..1730118	-	422	119873397	-	Pisl_1914	-	anthranilate synthase
1878	 62.73	+1	1730115..1731104	-	329	119873398	-	Pisl_1915	-	anthranilate phosphoribosyltransferase
1879	 60.41	+1	1731120..1732382	-	420	119873399	-	Pisl_1916	-	tryptophan synthase subunit beta
1880	 48.69	0	1732758..1733024	+	88	119873400	-	Pisl_1917	-	hypothetical protein
1881	 67.78	+2	1733436..1734065	+	209	119873401	-	Pisl_1918	-	phosphoribosylanthranilate isomerase
1882	 63.53	+2	1734025..1734279	-	84	119873402	-	Pisl_1919	-	hypothetical protein
1883	 60.24	+1	1734310..1734963	-	217	119873403	-	Pisl_1920	-	hypothetical protein
1884	 64.61	+2	1735111..1735743	+	210	119873404	-	Pisl_1921	-	uracil-DNA glycosylase superfamily protein
1885	 59.62	+1	1735820..1736131	+	103	119873405	-	Pisl_1922	-	FHA domain-containing protein
1886	 63.00	+1	1736158..1737303	+	381	119873406	-	Pisl_1923	-	aminotransferase class-III
1887	 62.91	+1	1737300..1737992	+	230	119873407	-	Pisl_1924	-	metallophosphoesterase
1888	 55.78	0	1738035..1738475	-	146	119873408	-	Pisl_1925	-	vitamin K epoxide reductase
1889	 61.71	+1	1738529..1739395	+	288	119873409	-	Pisl_1926	-	radical SAM domain-containing protein
1890	 47.78	0	1739614..1739793	+	59	119873410	-	Pisl_1927	-	hypothetical protein
1891	 47.86	0	1740317..1742044	-	575	119873411	-	Pisl_1928	-	hypothetical protein
1892	 41.30	-1	1742046..1743350	-	434	119873412	-	Pisl_1929	-	hypothetical protein
1893	 50.41	0	1743347..1744318	-	323	119873413	-	Pisl_1930	-	hypothetical protein
1894	 46.79	0	1744442..1745251	+	269	119873414	-	Pisl_1931	-	hypothetical protein
1895	 65.88	+2	1745438..1746073	-	211	119873415	-	Pisl_1932	-	hypothetical protein
1896	 64.29	+2	1746167..1746586	-	139	119873416	-	Pisl_1933	-	hypothetical protein
1897	 66.08	+2	1746646..1748190	-	514	119873417	-	Pisl_1934	-	carbohydrate kinase, YjeF related protein
1898	 65.28	+2	1748419..1748922	+	167	119873418	-	Pisl_1935	-	PaREP8 domain-containing protein
1899	 59.11	+1	1749573..1749956	+	127	119873419	-	Pisl_1936	-	paREP8
1900	 61.11	+1	1750003..1750560	+	185	119873420	-	Pisl_1937	-	hypothetical protein
1901	 63.81	+2	1750591..1751256	+	221	119873421	-	Pisl_1938	-	hypothetical protein
1902	 60.10	+1	1751429..1751809	-	126	119873422	-	Pisl_1939	-	hypothetical protein
1903	 61.03	+1	1751781..1753040	-	419	119873423	-	Pisl_1940	-	hypothetical protein
1904	 63.28	+1	1753196..1754140	+	314	119873424	-	Pisl_1941	-	hypothetical protein
1905	 57.05	+1	1754074..1755363	-	429	119873425	-	Pisl_1942	-	hypothetical protein
1906	 57.51	+1	1755365..1756576	-	403	119873426	-	Pisl_1943	-	ATPase
1907	 62.76	+1	1759713..1760096	+	127	119873427	-	Pisl_1944	-	paREP9
1908	 62.40	+1	1760330..1761454	-	374	119873428	-	Pisl_1945	-	hypothetical protein
1909	 62.41	+1	1761477..1761758	-	93	119873429	-	Pisl_1946	-	hypothetical protein
1910	 58.33	+1	1761843..1762250	-	135	119873430	-	Pisl_1947	-	dinitrogenase iron-molybdenum cofactor biosynthesis protein
1911	 50.83	0	1762384..1763166	+	260	119873431	-	Pisl_1948	-	GTPase
1912	 64.81	+2	1763251..1764222	+	323	119873432	-	Pisl_1949	-	alcohol dehydrogenase
1913	 62.98	+1	1764479..1765861	+	460	119873433	-	Pisl_1950	-	hypothetical protein
1914	 51.22	0	1766052..1766582	+	176	119873434	-	Pisl_1951	-	hypothetical protein
1915	 50.89	0	1766635..1767198	+	187	119873435	-	Pisl_1952	-	hypothetical protein
1916	 60.33	+1	1767322..1768473	+	383	119873436	-	Pisl_1953	-	peptidase M16 domain-containing protein
1917	 59.36	+1	1768492..1769778	+	428	119873437	-	Pisl_1954	-	periplasmic binding protein
1918	 65.04	+2	1769775..1770698	+	307	119873438	-	Pisl_1955	-	transport system permease protein
1919	 59.33	+1	1770682..1771335	+	217	119873439	-	Pisl_1956	-	ABC transporter related
1920	 50.83	0	1771502..1773724	+	740	119873440	-	Pisl_1957	-	elongation factor EF-2
1921	 56.54	+1	1773830..1774846	+	338	119873441	-	Pisl_1958	-	ABC transporter periplasmic-binding protein
1922	 51.18	0	1774819..1776258	+	479	119873442	-	Pisl_1959	-	putative thiamine transport system permease protein
1923	 51.90	0	1776255..1777175	-	306	119873443	-	Pisl_1960	-	ABC transporter related
1924	 48.36	0	1777287..1777865	-	192	119873444	-	Pisl_1961	-	hypothetical protein
1925	 47.49	0	1778244..1779479	-	411	119873445	-	Pisl_1962	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1926	 47.79	0	1780056..1780394	-	112	119873446	-	Pisl_1963	-	siroheme-sulfite reductase gamma subunit-like protein
1927	 48.03	0	1780497..1781639	+	380	119873447	-	Pisl_1964	-	acyl-CoA dehydrogenase domain-containing protein
1928	 52.95	0	1781636..1782772	-	378	119873448	-	Pisl_1965	-	amidohydrolase
1929	 47.68	0	1782775..1783917	-	380	119873449	-	Pisl_1966	-	AAA ATPase
1930	 50.84	0	1783932..1785542	-	536	119873450	-	Pisl_1967	-	alpha amylase, catalytic region
1931	 43.94	0	1785579..1785908	+	109	119873451	-	Pisl_1968	-	GTP cyclohydrolase I
1932	 56.06	0	1785905..1786630	-	241	119873452	-	Pisl_1969	-	ABC-2 type transporter
1933	 57.09	+1	1786617..1787483	-	288	119873453	-	Pisl_1970	-	ABC transporter related
1934	 51.59	0	1787520..1788401	-	293	119873454	-	Pisl_1971	-	ATP-NAD/AcoX kinase
1935	 60.59	+1	1788513..1789631	+	372	119873455	-	Pisl_1972	-	major facilitator transporter
1936	 65.87	+2	1789628..1790881	-	417	119873456	-	Pisl_1973	-	major facilitator transporter
1937	 61.35	+1	1790937..1791575	+	212	119873457	-	Pisl_1974	-	TenA family transcription regulator
1938	 61.25	+1	1791562..1792152	+	196	119873458	-	Pisl_1975	-	TENA/THI-4 domain-containing protein
1939	 54.80	0	1792174..1793193	+	339	119873459	-	Pisl_1976	-	hypothetical protein
1940	 56.19	0	1793314..1794420	-	368	119873460	-	Pisl_1977	-	hypothetical protein
1941	 57.28	+1	1794570..1794995	+	141	119873461	-	Pisl_1978	-	transposase, IS605 OrfB
1942	 58.50	+1	1795398..1795703	+	101	119873462	-	Pisl_1979	-	hypothetical protein
1943	 60.10	+1	1795689..1796693	-	334	119873463	-	Pisl_1980	-	hypothetical protein
1944	 46.39	0	1796674..1797186	-	170	119873464	-	Pisl_1981	-	hypothetical protein
1945	 52.20	0	1797444..1797989	+	181	119873465	-	Pisl_1982	-	uncharacterized component of anaerobic dehydrogenase
1946	 58.51	+1	1797973..1798830	+	285	119873466	-	Pisl_1983	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1947	 58.33	+1	1798820..1800583	+	587	119873467	-	Pisl_1984	-	hypothetical protein
1948	 53.61	0	1800554..1800982	-	142	119873468	-	Pisl_1985	-	hypothetical protein
1949	 59.13	+1	1801107..1801955	+	282	119873469	-	Pisl_1986	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1950	 55.74	0	1801960..1802682	+	240	119873470	-	Pisl_1987	-	hypothetical protein
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.