IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1806	 49.43	0	1671193..1671540	-	115	119873326	-	Pisl_1842	-	hypothetical protein
1807	 48.60	0	1671704..1672705	+	333	119873327	-	Pisl_1843	-	AAA ATPase
1808	 59.58	+1	1672933..1673793	+	286	119873328	-	Pisl_1844	-	TatD-related deoxyribonuclease
1809	 53.57	0	1673893..1674060	+	55	119873329	-	Pisl_1845	-	paREP10
1810	 58.11	+1	1674050..1675264	-	404	119873330	-	Pisl_1846	-	DegT/DnrJ/EryC1/StrS aminotransferase
1811	 53.33	0	1675320..1675754	+	144	119873331	-	Pisl_1847	-	hypothetical protein
1812	 46.72	0	1675751..1676146	-	131	119873332	-	Pisl_1848	-	hypothetical protein
1813	 47.42	0	1676202..1676414	+	70	119873333	-	Pisl_1849	-	hypothetical protein
1814	 50.64	0	1676441..1676983	+	180	119873334	-	Pisl_1850	-	hypothetical protein
1815	 49.51	0	1676921..1678156	-	411	119873335	-	Pisl_1851	-	hypothetical protein
1816	 46.04	0	1678970..1679575	-	201	119873336	-	Pisl_1852	-	hypothetical protein
1817	 50.25	0	1679602..1680819	+	405	119873337	-	Pisl_1853	-	acyl-CoA dehydrogenase domain-containing protein
1818	 45.45	0	1680842..1681534	+	230	119873338	-	Pisl_1854	-	adenine phosphoribosyltransferase
1819	 45.69	0	1681695..1681961	+	88	119873339	-	Pisl_1855	-	CBS domain-containing protein
1820	 51.14	0	1681971..1682801	+	276	119873340	-	Pisl_1856	-	ExsB family protein
1821	 50.62	0	1682824..1683633	-	269	119873341	-	Pisl_1857	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1822	 55.61	0	1683661..1684275	+	204	119873342	-	Pisl_1858	-	lysine exporter protein LysE/YggA
1823	 47.56	0	1684255..1684950	-	231	119873343	-	Pisl_1859	-	hypothetical protein
1824	 49.14	0	1685600..1686238	+	212	119873344	-	Pisl_1860	-	peroxidase
1825	 61.48	+1	1686267..1686767	+	166	119873345	-	Pisl_1861	-	hypothetical protein
1826	 58.61	+1	1686764..1687855	-	363	119873346	-	Pisl_1862	-	FAD dependent oxidoreductase
1827	 51.99	0	1687891..1688769	+	292	119873347	-	Pisl_1863	-	extracellular solute-binding protein
1828	 44.85	0	1688800..1688964	+	54	119873348	rps14P	Pisl_1864	-	30S ribosomal protein S14P
1829	 44.27	0	1689073..1689465	+	130	119873349	rps8p	Pisl_1865	-	30S ribosomal protein S8P
1830	 50.87	0	1689691..1690152	+	153	119873350	rpl32e	Pisl_1866	-	50S ribosomal protein L32e
1831	 46.62	0	1690155..1690598	+	147	119873351	rpl19e	Pisl_1867	-	50S ribosomal protein L19e
1832	 47.90	0	1690600..1691217	+	205	119873352	rpl18p	Pisl_1868	-	50S ribosomal protein L18P
1833	 49.12	0	1691542..1692567	+	341	119873353	-	Pisl_1869	-	thioesterase superfamily protein
1834	 48.76	0	1692902..1693705	+	267	119873354	-	Pisl_1870	-	hypothetical protein
1835	 44.44	0	1693683..1693925	+	80	119873355	-	Pisl_1871	-	hypothetical protein
1836	 44.09	0	1693926..1694483	+	185	119873356	-	Pisl_1872	-	hypothetical protein
1837	 52.47	0	1694500..1694823	+	107	119873357	-	Pisl_1873	-	hypothetical protein
1838	 45.43	0	1695314..1695652	+	112	119873358	-	Pisl_1874	-	hypothetical protein
1839	 51.09	0	1695705..1696481	-	258	119873359	-	Pisl_1875	-	putative ATP binding protein
1840	 44.32	0	1696478..1696750	-	90	119873360	-	Pisl_1876	-	hypothetical protein
1841	 46.26	0	1697492..1698187	-	231	119873361	-	Pisl_1878	-	sugar fermentation stimulation protein
1842	 41.59	-1	1698629..1699597	+	322	119873362	-	Pisl_1879	-	beta-lactamase domain-containing protein
1843	 39.66	-1	1699768..1699941	-	57	119873363	-	Pisl_1880	-	preprotein translocase subunit SecG
1844	 44.40	0	1700363..1701094	+	243	119873364	-	Pisl_1881	-	hypothetical protein
1845	 46.67	0	1701062..1701721	-	219	119873365	-	Pisl_1882	-	hypothetical protein
1846	 46.62	0	1701781..1702977	+	398	119873366	-	Pisl_1883	-	major facilitator transporter
1847	 43.00	0	1703084..1703497	-	137	119873367	-	Pisl_1884	-	UspA domain-containing protein
1848	 41.55	-1	1703590..1704027	-	145	119873368	-	Pisl_1885	-	signal-transduction protein
1849	 37.90	-1	1704355..1704573	+	72	119873369	-	Pisl_1886	-	hypothetical protein
1850	 45.72	0	1704590..1705162	+	190	119873370	-	Pisl_1887	-	hypothetical protein
1851	 46.83	0	1705291..1707720	-	809	119873371	-	Pisl_1888	-	phosphoenolpyruvate synthase
1852	 48.34	0	1707835..1708527	-	230	119873372	-	Pisl_1889	-	hypothetical protein
1853	 52.38	0	1708598..1709794	+	398	119873373	-	Pisl_1890	-	radical SAM domain-containing protein
1854	 55.14	0	1709752..1710072	-	106	119873374	-	Pisl_1891	-	hypothetical protein
1855	 44.04	0	1710047..1710373	-	108	119873375	-	Pisl_1892	-	hypothetical protein
1856	 52.50	0	1710767..1711768	-	333	119873376	-	Pisl_1893	-	metalloendopeptidase glycoprotease family
1857	 51.96	0	1711768..1711971	-	67	119873377	-	Pisl_1894	-	30S ribosomal protein S27ae
1858	 43.82	0	1711974..1712345	-	123	119873378	-	Pisl_1895	-	Fis family transcriptional regulator
1859	 40.82	-1	1712799..1713239	-	146	119873379	-	Pisl_1896	-	hypothetical protein
1860	 50.34	0	1713521..1714972	+	483	119873380	-	Pisl_1897	-	radical SAM domain-containing protein
1861	 55.27	0	1714937..1715401	-	154	119873381	-	Pisl_1898	-	abortive infection protein
1862	 43.46	0	1715460..1716101	+	213	119873382	-	Pisl_1899	-	hypothetical protein
1863	 48.62	0	1716125..1716994	+	289	119873383	-	Pisl_1900	-	ornithine cyclodeaminase/mu-crystallin
1864	 57.37	+1	1716985..1718340	+	451	119873384	-	Pisl_1901	-	type III restriction enzyme, res subunit
1865	 57.94	+1	1718337..1719470	+	377	119873385	-	Pisl_1902	-	hypothetical protein
1866	 53.52	0	1719464..1720558	-	364	119873386	-	Pisl_1903	-	radical SAM domain-containing protein
1867	 45.37	0	1720584..1720907	-	107	119873387	-	Pisl_1904	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1868	 46.82	0	1721185..1722333	-	382	119873388	-	Pisl_1905	-	hypothetical protein
1869	 47.95	0	1722330..1722500	-	56	119873389	-	Pisl_1906	-	30S ribosomal protein S30e
1870	 58.45	+1	1722782..1724083	-	433	119873390	-	Pisl_1907	-	IS605 family transposase OrfB
1871	 49.65	0	1724650..1725078	-	142	119873391	-	Pisl_1908	-	hypothetical protein
1872	 51.76	0	1725071..1725439	-	122	119873392	-	Pisl_1909	-	hypothetical protein
1873	 57.86	+1	1725430..1726281	-	283	119873393	-	Pisl_1910	-	hypothetical protein
1874	 57.60	+1	1726284..1727585	+	433	119873394	-	Pisl_1911	-	citrate transporter
1875	 61.86	+1	1727574..1728281	-	235	119873395	trpA	Pisl_1912	-	tryptophan synthase subunit alpha
1876	 56.87	+1	1728278..1728859	-	193	119873396	-	Pisl_1913	-	anthranilate synthase component II
1877	 59.97	+1	1728850..1730118	-	422	119873397	-	Pisl_1914	-	anthranilate synthase
1878	 62.73	+1	1730115..1731104	-	329	119873398	-	Pisl_1915	-	anthranilate phosphoribosyltransferase
1879	 60.41	+1	1731120..1732382	-	420	119873399	-	Pisl_1916	-	tryptophan synthase subunit beta
1880	 48.69	0	1732758..1733024	+	88	119873400	-	Pisl_1917	-	hypothetical protein
1881	 67.78	+2	1733436..1734065	+	209	119873401	-	Pisl_1918	-	phosphoribosylanthranilate isomerase
1882	 63.53	+2	1734025..1734279	-	84	119873402	-	Pisl_1919	-	hypothetical protein
1883	 60.24	+1	1734310..1734963	-	217	119873403	-	Pisl_1920	-	hypothetical protein
1884	 64.61	+2	1735111..1735743	+	210	119873404	-	Pisl_1921	-	uracil-DNA glycosylase superfamily protein
1885	 59.62	+1	1735820..1736131	+	103	119873405	-	Pisl_1922	-	FHA domain-containing protein
1886	 63.00	+1	1736158..1737303	+	381	119873406	-	Pisl_1923	-	aminotransferase class-III
1887	 62.91	+1	1737300..1737992	+	230	119873407	-	Pisl_1924	-	metallophosphoesterase
1888	 55.78	0	1738035..1738475	-	146	119873408	-	Pisl_1925	-	vitamin K epoxide reductase
1889	 61.71	+1	1738529..1739395	+	288	119873409	-	Pisl_1926	-	radical SAM domain-containing protein
1890	 47.78	0	1739614..1739793	+	59	119873410	-	Pisl_1927	-	hypothetical protein
1891	 47.86	0	1740317..1742044	-	575	119873411	-	Pisl_1928	-	hypothetical protein
1892	 41.30	-1	1742046..1743350	-	434	119873412	-	Pisl_1929	-	hypothetical protein
1893	 50.41	0	1743347..1744318	-	323	119873413	-	Pisl_1930	-	hypothetical protein
1894	 46.79	0	1744442..1745251	+	269	119873414	-	Pisl_1931	-	hypothetical protein
1895	 65.88	+2	1745438..1746073	-	211	119873415	-	Pisl_1932	-	hypothetical protein
1896	 64.29	+2	1746167..1746586	-	139	119873416	-	Pisl_1933	-	hypothetical protein
1897	 66.08	+2	1746646..1748190	-	514	119873417	-	Pisl_1934	-	carbohydrate kinase, YjeF related protein
1898	 65.28	+2	1748419..1748922	+	167	119873418	-	Pisl_1935	-	PaREP8 domain-containing protein
1899	 59.11	+1	1749573..1749956	+	127	119873419	-	Pisl_1936	-	paREP8
1900	 61.11	+1	1750003..1750560	+	185	119873420	-	Pisl_1937	-	hypothetical protein
1901	 63.81	+2	1750591..1751256	+	221	119873421	-	Pisl_1938	-	hypothetical protein
1902	 60.10	+1	1751429..1751809	-	126	119873422	-	Pisl_1939	-	hypothetical protein
1903	 61.03	+1	1751781..1753040	-	419	119873423	-	Pisl_1940	-	hypothetical protein
1904	 63.28	+1	1753196..1754140	+	314	119873424	-	Pisl_1941	-	hypothetical protein
1905	 57.05	+1	1754074..1755363	-	429	119873425	-	Pisl_1942	-	hypothetical protein
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.