IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1757	 54.53	0	1627841..1628656	+	271	119873277	-	Pisl_1792	-	shikimate kinase
1758	 49.67	0	1628867..1629166	+	99	119873278	-	Pisl_1793	-	hypothetical protein
1759	 46.75	0	1629213..1631276	-	687	119873279	-	Pisl_1794	-	Alpha-glucosidase
1760	 44.03	0	1631300..1631617	-	105	119873280	-	Pisl_1795	-	hypothetical protein
1761	 56.56	+1	1631674..1632702	+	342	119873281	rpl3p	Pisl_1796	-	50S ribosomal protein L3P
1762	 52.60	0	1632725..1633570	+	281	119873282	rpl4lp	Pisl_1797	-	50S ribosomal protein L4P
1763	 45.12	0	1633567..1633812	+	81	119873283	-	Pisl_1798	-	ribosomal protein L25/L23
1764	 44.01	0	1633916..1634299	-	127	119873284	-	Pisl_1799	-	hypothetical protein
1765	 48.60	0	1634342..1634878	-	178	119873285	-	Pisl_1800	-	hypothetical protein
1766	 47.31	0	1634926..1635519	+	197	119873286	-	Pisl_1801	-	hypothetical protein
1767	 42.96	0	1635526..1635795	+	89	119873287	-	Pisl_1802	-	DNA-directed RNA polymerase subunit L
1768	 46.85	0	1635792..1636457	+	221	119873288	-	Pisl_1803	-	ribosome biogenesis protein
1769	 48.61	0	1636454..1637206	+	250	119873289	-	Pisl_1804	-	hypothetical protein
1770	 51.30	0	1637236..1638426	+	396	119873290	-	Pisl_1805	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
1771	 50.28	0	1638469..1639713	+	414	119873291	-	Pisl_1806	-	3-isopropylmalate dehydratase large subunit
1772	 47.93	0	1639841..1640758	-	305	119873292	-	Pisl_1807	-	ornithine carbamoyltransferase
1773	 45.45	0	1640822..1642249	-	475	119873293	-	Pisl_1808	-	2-isopropylmalate synthase
1774	 45.92	0	1642320..1644098	+	592	119873294	-	Pisl_1809	-	hypothetical protein
1775	 55.67	0	1644098..1644397	+	99	119873295	-	Pisl_1810	-	hypothetical protein
1776	 49.47	0	1644490..1646547	-	685	119873296	-	Pisl_1811	-	glutamate synthase (NADPH)
1777	 51.03	0	1646576..1648282	-	568	119873297	-	Pisl_1812	-	glutamate synthase alpha subunit
1778	 43.83	0	1648440..1648925	-	161	119873298	leuD	Pisl_1813	-	3-isopropylmalate dehydratase small subunit
1779	 43.41	0	1648950..1650170	+	406	119873299	-	Pisl_1814	-	trans-homoaconitate synthase
1780	 48.36	0	1650160..1651137	+	325	119873300	-	Pisl_1815	-	3-isopropylmalate dehydrogenase
1781	 46.37	0	1651171..1652436	+	421	119873301	-	Pisl_1816	-	Glu/Leu/Phe/Val dehydrogenase, C terminal
1782	 41.55	-1	1652433..1652639	-	68	119873302	-	Pisl_1817	-	hypothetical protein
1783	 45.31	0	1653839..1654222	-	127	119873303	-	Pisl_1819	-	hypothetical protein
1784	 45.07	0	1654290..1654979	+	229	119873304	-	Pisl_1820	-	polar amino acid ABC transporter, inner membrane subunit
1785	 48.63	0	1654983..1655714	+	243	119873305	-	Pisl_1821	-	ABC transporter related
1786	 55.81	0	1655711..1657579	+	622	119873306	-	Pisl_1822	-	molybdopterin oxidoreductase
1787	 58.72	+1	1657601..1658305	+	234	119873307	-	Pisl_1823	-	TatD-related deoxyribonuclease
1788	 50.95	0	1658293..1659132	+	279	119873308	-	Pisl_1824	-	bis(5'nucleosyl)-tetraphosphatase, ApaH
1789	 55.37	0	1659178..1659708	-	176	119873309	dcd	Pisl_1825	-	deoxycytidine triphosphate deaminase
1790	 48.47	0	1659789..1660277	+	162	119873310	-	Pisl_1826	-	hypothetical protein
1791	 47.99	0	1660274..1660546	-	90	119873311	-	Pisl_1827	-	hypothetical protein
1792	 48.46	0	1660581..1661036	+	151	119873312	-	Pisl_1828	-	methylated-DNA--protein-cysteine methyltransferase
1793	 50.00	0	1661052..1661279	+	75	119873313	-	Pisl_1829	-	ferredoxin
1794	 45.14	0	1661282..1661908	+	208	119873314	-	Pisl_1830	-	hydrolase
1795	 42.17	0	1662159..1663052	+	297	119873315	-	Pisl_1831	-	phosphate uptake regulator, PhoU
1796	 48.92	0	1663049..1663741	+	230	119873316	-	Pisl_1832	-	hypothetical protein
1797	 47.28	0	1663975..1664433	-	152	119873317	-	Pisl_1833	-	riboflavin synthase
1798	 49.05	0	1664476..1664844	+	122	119873318	-	Pisl_1834	-	CopG family transcriptional regulator
1799	 51.67	0	1664904..1665203	+	99	119873319	-	Pisl_1835	-	hypothetical protein
1800	 47.94	0	1665200..1666171	+	323	119873320	-	Pisl_1836	-	peptidase M24
1801	 53.05	0	1666666..1667994	+	442	119873321	-	Pisl_1837	-	D-lactate dehydrogenase (cytochrome)
1802	 50.14	0	1667991..1668353	-	120	119873322	-	Pisl_1838	-	putative transcriptional regulator
1803	 50.23	0	1668381..1668599	-	72	119873323	-	Pisl_1839	-	hypothetical protein
1804	 55.63	0	1668782..1670041	-	419	119873324	-	Pisl_1840	-	transposase, IS605 OrfB
1805	 53.94	0	1670702..1671196	-	164	119873325	-	Pisl_1841	-	hypothetical protein
1806	 49.43	0	1671193..1671540	-	115	119873326	-	Pisl_1842	-	hypothetical protein
1807	 48.60	0	1671704..1672705	+	333	119873327	-	Pisl_1843	-	AAA ATPase
1808	 59.58	+1	1672933..1673793	+	286	119873328	-	Pisl_1844	-	TatD-related deoxyribonuclease
1809	 53.57	0	1673893..1674060	+	55	119873329	-	Pisl_1845	-	paREP10
1810	 58.11	+1	1674050..1675264	-	404	119873330	-	Pisl_1846	-	DegT/DnrJ/EryC1/StrS aminotransferase
1811	 53.33	0	1675320..1675754	+	144	119873331	-	Pisl_1847	-	hypothetical protein
1812	 46.72	0	1675751..1676146	-	131	119873332	-	Pisl_1848	-	hypothetical protein
1813	 47.42	0	1676202..1676414	+	70	119873333	-	Pisl_1849	-	hypothetical protein
1814	 50.64	0	1676441..1676983	+	180	119873334	-	Pisl_1850	-	hypothetical protein
1815	 49.51	0	1676921..1678156	-	411	119873335	-	Pisl_1851	-	hypothetical protein
1816	 46.04	0	1678970..1679575	-	201	119873336	-	Pisl_1852	-	hypothetical protein
1817	 50.25	0	1679602..1680819	+	405	119873337	-	Pisl_1853	-	acyl-CoA dehydrogenase domain-containing protein
1818	 45.45	0	1680842..1681534	+	230	119873338	-	Pisl_1854	-	adenine phosphoribosyltransferase
1819	 45.69	0	1681695..1681961	+	88	119873339	-	Pisl_1855	-	CBS domain-containing protein
1820	 51.14	0	1681971..1682801	+	276	119873340	-	Pisl_1856	-	ExsB family protein
1821	 50.62	0	1682824..1683633	-	269	119873341	-	Pisl_1857	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1822	 55.61	0	1683661..1684275	+	204	119873342	-	Pisl_1858	-	lysine exporter protein LysE/YggA
1823	 47.56	0	1684255..1684950	-	231	119873343	-	Pisl_1859	-	hypothetical protein
1824	 49.14	0	1685600..1686238	+	212	119873344	-	Pisl_1860	-	peroxidase
1825	 61.48	+1	1686267..1686767	+	166	119873345	-	Pisl_1861	-	hypothetical protein
1826	 58.61	+1	1686764..1687855	-	363	119873346	-	Pisl_1862	-	FAD dependent oxidoreductase
1827	 51.99	0	1687891..1688769	+	292	119873347	-	Pisl_1863	-	extracellular solute-binding protein
1828	 44.85	0	1688800..1688964	+	54	119873348	rps14P	Pisl_1864	-	30S ribosomal protein S14P
1829	 44.27	0	1689073..1689465	+	130	119873349	rps8p	Pisl_1865	-	30S ribosomal protein S8P
1830	 50.87	0	1689691..1690152	+	153	119873350	rpl32e	Pisl_1866	-	50S ribosomal protein L32e
1831	 46.62	0	1690155..1690598	+	147	119873351	rpl19e	Pisl_1867	-	50S ribosomal protein L19e
1832	 47.90	0	1690600..1691217	+	205	119873352	rpl18p	Pisl_1868	-	50S ribosomal protein L18P
1833	 49.12	0	1691542..1692567	+	341	119873353	-	Pisl_1869	-	thioesterase superfamily protein
1834	 48.76	0	1692902..1693705	+	267	119873354	-	Pisl_1870	-	hypothetical protein
1835	 44.44	0	1693683..1693925	+	80	119873355	-	Pisl_1871	-	hypothetical protein
1836	 44.09	0	1693926..1694483	+	185	119873356	-	Pisl_1872	-	hypothetical protein
1837	 52.47	0	1694500..1694823	+	107	119873357	-	Pisl_1873	-	hypothetical protein
1838	 45.43	0	1695314..1695652	+	112	119873358	-	Pisl_1874	-	hypothetical protein
1839	 51.09	0	1695705..1696481	-	258	119873359	-	Pisl_1875	-	putative ATP binding protein
1840	 44.32	0	1696478..1696750	-	90	119873360	-	Pisl_1876	-	hypothetical protein
1841	 46.26	0	1697492..1698187	-	231	119873361	-	Pisl_1878	-	sugar fermentation stimulation protein
1842	 41.59	-1	1698629..1699597	+	322	119873362	-	Pisl_1879	-	beta-lactamase domain-containing protein
1843	 39.66	-1	1699768..1699941	-	57	119873363	-	Pisl_1880	-	preprotein translocase subunit SecG
1844	 44.40	0	1700363..1701094	+	243	119873364	-	Pisl_1881	-	hypothetical protein
1845	 46.67	0	1701062..1701721	-	219	119873365	-	Pisl_1882	-	hypothetical protein
1846	 46.62	0	1701781..1702977	+	398	119873366	-	Pisl_1883	-	major facilitator transporter
1847	 43.00	0	1703084..1703497	-	137	119873367	-	Pisl_1884	-	UspA domain-containing protein
1848	 41.55	-1	1703590..1704027	-	145	119873368	-	Pisl_1885	-	signal-transduction protein
1849	 37.90	-1	1704355..1704573	+	72	119873369	-	Pisl_1886	-	hypothetical protein
1850	 45.72	0	1704590..1705162	+	190	119873370	-	Pisl_1887	-	hypothetical protein
1851	 46.83	0	1705291..1707720	-	809	119873371	-	Pisl_1888	-	phosphoenolpyruvate synthase
1852	 48.34	0	1707835..1708527	-	230	119873372	-	Pisl_1889	-	hypothetical protein
1853	 52.38	0	1708598..1709794	+	398	119873373	-	Pisl_1890	-	radical SAM domain-containing protein
1854	 55.14	0	1709752..1710072	-	106	119873374	-	Pisl_1891	-	hypothetical protein
1855	 44.04	0	1710047..1710373	-	108	119873375	-	Pisl_1892	-	hypothetical protein
1856	 52.50	0	1710767..1711768	-	333	119873376	-	Pisl_1893	-	metalloendopeptidase glycoprotease family
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.