IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1555	 49.71	0	1444370..1445059	+	229	119873075	-	Pisl_1585	-	triosephosphate isomerase
1556	 39.86	-1	1445104..1445379	-	91	119873076	-	Pisl_1586	-	hypothetical protein
1557	 47.46	0	1445447..1445800	+	117	119873077	-	Pisl_1587	-	hypothetical protein
1558	 45.48	0	1445781..1446389	-	202	119873078	-	Pisl_1588	-	hypothetical protein
1559	 50.11	0	1446455..1446901	+	148	119873079	-	Pisl_1589	-	30S ribosomal protein S6e
1560	 34.98	-1	1446905..1447147	-	80	119873080	-	Pisl_1590	-	AsnC family transcriptional regulator
1561	 40.82	-1	1447510..1448310	+	266	119873081	-	Pisl_1591	-	beta-lactamase domain-containing protein
1562	 46.35	0	1448292..1449497	-	401	119873082	-	Pisl_1592	-	amidase
1563	 42.66	0	1449609..1450187	-	192	119873083	-	Pisl_1593	-	translin family protein
1564	 43.36	0	1450219..1451076	-	285	119873084	-	Pisl_1594	-	hypothetical protein
1565	 43.84	0	1451080..1451298	+	72	119873085	-	Pisl_1595	-	hypothetical protein
1566	 45.17	0	1451557..1452519	-	320	119873086	-	Pisl_1596	-	hypothetical protein
1567	 43.90	0	1452519..1452944	-	141	119873087	-	Pisl_1597	-	signal-transduction protein
1568	 46.11	0	1452975..1453154	-	59	119873088	-	Pisl_1598	-	hypothetical protein
1569	 43.10	0	1453426..1453845	-	139	119873089	-	Pisl_1599	-	hypothetical protein
1570	 46.69	0	1453962..1455728	+	588	119873090	-	Pisl_1600	-	translation initiation factor IF-2
1571	 44.59	0	1455751..1456905	+	384	119873091	-	Pisl_1601	-	iron-containing alcohol dehydrogenase
1572	 41.62	-1	1457013..1457507	-	164	119873092	-	Pisl_1602	-	Miro domain-containing protein
1573	 49.00	0	1457504..1458001	-	165	119873093	-	Pisl_1603	-	dual specificity protein phosphatase
1574	 42.88	0	1457992..1458714	-	240	119873094	-	Pisl_1604	-	binding-protein-dependent transport systems inner membrane component
1575	 46.90	0	1458711..1459403	-	230	119873095	-	Pisl_1605	-	ABC transporter related
1576	 43.29	0	1459400..1460293	-	297	119873096	-	Pisl_1606	-	NLPA lipoprotein
1577	 46.20	0	1460315..1461526	-	403	119873097	-	Pisl_1607	-	cytochrome c biogenesis protein, transmembrane region
1578	 50.40	0	1461558..1462178	+	206	119873098	-	Pisl_1608	-	beta-lactamase domain-containing protein
1579	 46.91	0	1462200..1462361	+	53	119873099	-	Pisl_1609	-	hypothetical protein
1580	 48.48	0	1462327..1462590	+	87	119873100	-	Pisl_1610	-	hypothetical protein
1581	 41.96	0	1462612..1462866	+	84	119873101	-	Pisl_1611	-	hypothetical protein
1582	 47.33	0	1462887..1463915	+	342	119873102	-	Pisl_1612	-	FAD dependent oxidoreductase
1583	 38.38	-1	1463908..1464105	+	65	119873103	-	Pisl_1613	-	CopG/Arc/MetJ family transcriptional regulator
1584	 45.63	0	1464136..1464948	+	270	119873104	-	Pisl_1614	-	hypothetical protein
1585	 44.82	0	1464986..1465342	-	118	119873105	-	Pisl_1615	-	twin arginine-targeting protein translocase
1586	 44.99	0	1465890..1466738	+	282	119873106	-	Pisl_1616	-	Sec-independent protein translocase TatC
1587	 47.31	0	1466723..1467559	-	278	119873107	-	Pisl_1617	-	hypothetical protein
1588	 51.37	0	1467593..1467958	+	121	119873108	-	Pisl_1618	-	hypothetical protein
1589	 46.71	0	1469104..1470000	+	298	119873109	-	Pisl_1620	-	carbamate kinase
1590	 44.55	0	1469985..1471250	-	421	119873110	-	Pisl_1621	-	histidyl-tRNA synthetase
1591	 46.51	0	1471247..1472293	-	348	119873111	-	Pisl_1622	-	saccharopine dehydrogenase
1592	 53.37	0	1472446..1473483	-	345	119873112	-	Pisl_1623	-	dolichyl-phosphate beta-D-mannosyltransferase
1593	 44.94	0	1474730..1475134	+	134	119873113	-	Pisl_1625	-	hypothetical protein
1594	 47.64	0	1475126..1475677	-	183	119873114	-	Pisl_1626	-	nucleoside-diphosphate kinase
1595	 47.13	0	1475689..1476927	-	412	119873115	-	Pisl_1627	-	NADH/ubiquinone/plastoquinone (complex I)
1596	 47.84	0	1476924..1478777	-	617	119873116	-	Pisl_1628	-	NADH dehydrogenase (quinone)
1597	 43.68	0	1478768..1480198	-	476	119873117	-	Pisl_1629	-	NADH dehydrogenase (quinone)
1598	 35.03	-1	1480195..1480488	-	97	119873118	-	Pisl_1630	-	NADH-ubiquinone oxidoreductase, chain 4L
1599	 38.46	-1	1480485..1480913	-	142	119873119	-	Pisl_1631	-	NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
1600	 42.29	0	1480996..1481475	-	159	119873120	-	Pisl_1632	-	NADH dehydrogenase subunit I
1601	 43.40	0	1481472..1482524	-	350	119873121	-	Pisl_1633	-	NADH dehydrogenase subunit H
1602	 46.57	0	1482534..1483742	-	402	119873122	-	Pisl_1634	-	NADH dehydrogenase subunit D
1603	 46.23	0	1483941..1484258	+	105	119873123	-	Pisl_1635	-	hypothetical protein
1604	 50.09	0	1484569..1485129	+	186	119873124	folE	Pisl_1636	-	GTP cyclohydrolase I
1605	 50.58	0	1485126..1485641	+	171	119873125	-	Pisl_1637	-	short-chain dehydrogenase/reductase SDR
1606	 43.87	0	1485748..1487085	-	445	119873126	-	Pisl_1638	-	hypothetical protein
1607	 41.40	-1	1487375..1487845	+	156	119873127	-	Pisl_1639	-	AsnC/Lrp family regulatory protein
1608	 40.45	-1	1487860..1488477	-	205	119873128	-	Pisl_1640	-	hypothetical protein
1609	 59.92	+1	1488728..1489201	+	157	119873129	-	Pisl_1641	-	hypothetical protein
1610	 48.13	0	1489602..1492067	+	821	119873130	-	Pisl_1642	-	peptidase M1, membrane alanine aminopeptidase
1611	 44.50	0	1492072..1492707	+	211	119873131	upp	Pisl_1643	-	uracil phosphoribosyltransferase
1612	 48.19	0	1492699..1493277	-	192	119873132	-	Pisl_1644	-	peptidase A24A, prepilin type IV
1613	 46.84	0	1493274..1494191	-	305	119873133	-	Pisl_1645	-	bifunctional phosphoglucose/phosphomannose isomerase
1614	 43.00	0	1494228..1496192	+	654	119873134	-	Pisl_1646	-	type III restriction enzyme, res subunit
1615	 39.41	-1	1496189..1496764	-	191	119873135	-	Pisl_1647	-	hypothetical protein
1616	 39.11	-1	1496918..1497592	+	224	119873136	-	Pisl_1648	-	hypothetical protein
1617	 40.22	-1	1497598..1497873	+	91	119873137	-	Pisl_1649	-	hypothetical protein
1618	 47.75	0	1498435..1501368	+	977	119873138	-	Pisl_1650	-	isoleucyl-tRNA synthetase
1619	 47.71	0	1501752..1502906	+	384	119873139	-	Pisl_1651	-	glycosyl transferase family protein
1620	 42.78	0	1502893..1503252	-	119	119873140	-	Pisl_1652	-	hypothetical protein
1621	 43.76	0	1503352..1504032	+	226	119873141	-	Pisl_1653	-	putative serine/threonine protein kinase
1622	 40.08	-1	1504006..1504524	-	172	119873142	-	Pisl_1654	-	PUA domain-containing protein
1623	 43.12	0	1504675..1505430	+	251	119873143	-	Pisl_1655	-	XRE family transcriptional regulator
1624	 42.87	0	1505427..1506485	+	352	119873144	-	Pisl_1656	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
1625	 40.16	-1	1506506..1507018	+	170	119873145	-	Pisl_1657	-	adenylate kinase, conjectural
1626	 42.59	0	1507015..1507446	+	143	119873146	-	Pisl_1658	-	hypothetical protein
1627	 41.63	-1	1507443..1508117	-	224	119873147	-	Pisl_1659	-	putative RNA methylase
1628	 37.84	-1	1508114..1509112	-	332	119873148	-	Pisl_1660	-	hypothetical protein
1629	 35.90	-1	1509112..1510164	-	350	119873149	-	Pisl_1661	-	hypothetical protein
1630	 39.23	-1	1510376..1511104	+	242	119873150	-	Pisl_1662	-	XRE family transcriptional regulator
1631	 42.86	0	1511106..1511588	-	160	119873151	-	Pisl_1663	-	ribosomal protein L13
1632	 32.03	-2	1511837..1512142	+	101	119873152	-	Pisl_1664	-	hypothetical protein
1633	 28.91	-2	1512143..1512481	-	112	119873153	-	Pisl_1665	-	hypothetical protein
1634	 36.51	-1	1512478..1512792	-	104	119873154	-	Pisl_1666	-	hypothetical protein
1635	 47.01	0	1512821..1513822	-	333	119873155	tfb	Pisl_1667	-	transcription initiation factor IIB
1636	 45.59	0	1513877..1514839	-	320	119873156	rfc	Pisl_1668	-	replication factor C small subunit
1637	 42.69	0	1514836..1515273	-	145	119873157	-	Pisl_1669	-	hypothetical protein
1638	 44.33	0	1515298..1516461	-	387	119873158	-	Pisl_1670	-	TGS domain-containing protein
1639	 39.85	-1	1516692..1517366	-	224	119873159	-	Pisl_1671	-	enoyl-CoA hydratase/isomerase
1640	 44.04	0	1517414..1518730	+	438	119873160	-	Pisl_1672	-	isocitrate dehydrogenase, NADP-dependent
1641	 40.51	-1	1518732..1519205	-	157	119873161	-	Pisl_1673	-	GCN5-related N-acetyltransferase
1642	 32.87	-2	1519357..1520220	-	287	119873162	-	Pisl_1674	-	hypothetical protein
1643	 45.42	0	1520213..1521172	-	319	119873163	-	Pisl_1675	-	DNA-cytosine methyltransferase
1644	 40.83	-1	1521219..1521818	+	199	119873164	-	Pisl_1676	-	hypothetical protein
1645	 38.24	-1	1521784..1522089	-	101	119873165	-	Pisl_1677	-	hypothetical protein
1646	 42.58	0	1522137..1523693	+	518	119873166	pheT	Pisl_1678	-	phenylalanyl-tRNA synthetase subunit beta
1647	 38.57	-1	1523714..1524076	+	120	119873167	-	Pisl_1679	-	hypothetical protein
1648	 39.27	-1	1524073..1524375	-	100	119873168	-	Pisl_1680	-	hypothetical protein
1649	 62.70	+1	1524574..1524825	+	83	119873169	-	Pisl_1681	-	hypothetical protein
1650	 42.29	0	1524955..1525233	-	92	119873170	-	Pisl_1682	-	hypothetical protein
1651	 42.93	0	1526126..1526521	-	131	119873171	-	Pisl_1684	-	YbaK/prolyl-tRNA synthetase associated region
1652	 40.09	-1	1526525..1526968	-	147	119873172	-	Pisl_1685	-	hypothetical protein
1653	 42.04	0	1527021..1527686	+	221	119873173	-	Pisl_1686	-	orotidine 5'-phosphate decarboxylase
1654	 40.70	-1	1527683..1528279	+	198	119873174	-	Pisl_1687	-	adenylate kinase
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.