IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum islandicum DSM 4184



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.97 STD DEV: 7.27
Pyrobaculum islandicum DSM 4184, complete genome - 1..1826402
1978 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1495	 58.55	+1	1389721..1391100	-	459	119873015	-	Pisl_1524	-	extracellular ligand-binding receptor
1496	 57.37	+1	1391272..1392024	-	250	119873016	-	Pisl_1525	-	ABC transporter related
1497	 60.34	+1	1392029..1392913	-	294	119873017	-	Pisl_1526	-	binding-protein-dependent transport systems inner membrane component
1498	 61.69	+1	1392910..1393833	-	307	119873018	-	Pisl_1527	-	phosphate ABC transporter, inner membrane subunit PstC
1499	 59.76	+1	1393917..1395161	-	414	119873019	-	Pisl_1528	-	phosphate ABC transporter, periplasmic phosphate-binding protein
1500	 61.28	+1	1395324..1396121	+	265	119873020	-	Pisl_1529	-	short-chain dehydrogenase/reductase SDR
1501	 55.07	0	1396125..1397366	-	413	119873021	-	Pisl_1530	-	IS605 family transposase OrfB
1502	 54.96	0	1397755..1398540	+	261	119873022	-	Pisl_1531	-	hypothetical protein
1503	 54.17	0	1398506..1398913	-	135	119873023	-	Pisl_1532	-	hypothetical protein
1504	 57.73	+1	1398901..1399314	-	137	119873024	-	Pisl_1533	-	hypothetical protein
1505	 61.44	+1	1399884..1400189	+	101	119873025	-	Pisl_1534	-	hypothetical protein
1506	 63.77	+2	1400213..1400557	+	114	119873026	-	Pisl_1535	-	paREP11
1507	 50.48	0	1400860..1401273	-	137	119873027	-	Pisl_1536	-	PilT domain-containing protein
1508	 49.35	0	1401260..1401490	-	76	119873028	-	Pisl_1537	-	hypothetical protein
1509	 60.67	+1	1402072..1402371	+	99	119873029	-	Pisl_1538	-	hypothetical protein
1510	 45.66	0	1402368..1402805	+	145	119873030	-	Pisl_1539	-	hypothetical protein
1511	 63.73	+2	1403392..1403766	-	124	119873031	-	Pisl_1540	-	paREP9
1512	 48.14	0	1405105..1408203	-	1032	119873032	-	Pisl_1541	-	HD superfamily hydrolase
1513	 51.41	0	1408191..1409219	-	342	119873033	-	Pisl_1542	-	CRISPR-associated RAMP Csm5 family protein
1514	 54.40	0	1409209..1410162	-	317	119873034	-	Pisl_1543	-	hypothetical protein
1515	 45.96	0	1410159..1411148	-	329	119873035	-	Pisl_1544	-	CRISPR-associated RAMP Csm3 family protein
1516	 38.36	-1	1411138..1411773	-	211	119873036	-	Pisl_1545	-	hypothetical protein
1517	 55.16	0	1411984..1412400	+	138	119873037	-	Pisl_1546	-	hypothetical protein
1518	 62.02	+1	1412798..1413700	+	300	119873038	-	Pisl_1547	-	hypothetical protein
1519	 47.48	0	1415462..1417864	+	800	119873039	-	Pisl_1548	-	ATPase domain-containing protein
1520	 40.88	-1	1417857..1418585	+	242	119873040	-	Pisl_1549	-	hypothetical protein
1521	 45.00	0	1418820..1419059	-	79	119873041	-	Pisl_1550	-	hypothetical protein
1522	 46.94	0	1419133..1419867	-	244	119873042	-	Pisl_1551	-	hypothetical protein
1523	 55.10	0	1419861..1420517	-	218	119873043	-	Pisl_1552	-	hypothetical protein
1524	 66.67	+2	1422076..1422516	-	146	119873044	-	Pisl_1554	-	phosphohistidine phosphatase, SixA
1525	 57.23	+1	1422728..1423405	-	225	119873045	-	Pisl_1555	-	methyltransferase small
1526	 61.59	+1	1423451..1423765	+	104	119873046	-	Pisl_1556	-	hypothetical protein
1527	 49.95	0	1423731..1424645	-	304	119873047	-	Pisl_1557	-	hypothetical protein
1528	 58.43	+1	1424738..1425004	+	88	119873048	-	Pisl_1558	-	hypothetical protein
1529	 44.92	0	1425466..1425819	-	117	119873049	-	Pisl_1559	-	hypothetical protein
1530	 48.64	0	1425850..1426143	-	97	119873050	-	Pisl_1560	-	hypothetical protein
1531	 56.74	+1	1426184..1426717	-	177	119873051	-	Pisl_1561	-	nicotinamide-nucleotide adenylyltransferase
1532	 51.84	0	1426714..1428177	-	487	119873052	pheS	Pisl_1562	-	phenylalanyl-tRNA synthetase subunit alpha
1533	 47.62	0	1428229..1428459	-	76	119873053	-	Pisl_1563	-	CopG family transcriptional regulator
1534	 45.28	0	1428512..1428829	-	105	119873054	-	Pisl_1564	-	hypothetical protein
1535	 45.62	0	1428865..1429995	-	376	119873055	-	Pisl_1565	-	hypothetical protein
1536	 47.43	0	1430153..1431649	-	498	119873056	-	Pisl_1566	-	hypothetical protein
1537	 43.10	0	1431740..1432036	+	98	119873057	-	Pisl_1567	-	hypothetical protein
1538	 45.91	0	1432033..1433169	-	378	119873058	-	Pisl_1568	-	hypothetical protein
1539	 46.13	0	1433293..1433628	-	111	119873059	-	Pisl_1569	-	hypothetical protein
1540	 48.10	0	1433677..1434360	+	227	119873060	-	Pisl_1570	-	acetyl/acyl transferase related protein
1541	 49.37	0	1434352..1435305	-	317	119873061	-	Pisl_1571	-	peptidase M42 family protein
1542	 50.37	0	1435368..1436036	+	222	119873062	-	Pisl_1572	-	purine phosphorylases family protein 1
1543	 30.79	-2	1436040..1436354	-	104	119873063	-	Pisl_1573	-	hypothetical protein
1544	 47.26	0	1436372..1437211	+	279	119873064	-	Pisl_1574	-	protein of unknown function DUF340, membrane
1545	 48.48	0	1437260..1437424	+	54	119873065	-	Pisl_1575	-	paREP10
1546	 47.29	0	1437429..1438001	-	190	119873066	-	Pisl_1576	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
1547	 47.03	0	1438001..1438708	-	235	119873067	-	Pisl_1577	-	hypothetical protein
1548	 42.13	0	1438758..1438973	+	71	119873068	-	Pisl_1578	-	CopG family transcriptional regulator
1549	 45.98	0	1439240..1439848	-	202	119873069	-	Pisl_1579	-	sugar isomerase (SIS)
1550	 46.56	0	1439877..1440254	-	125	119873070	-	Pisl_1580	-	S-adenosylmethionine decarboxylase proenzyme
1551	 45.09	0	1440535..1441104	+	189	119873071	-	Pisl_1581	-	hypothetical protein
1552	 44.79	0	1441101..1441292	+	63	119873072	-	Pisl_1582	-	hypothetical protein
1553	 49.20	0	1441373..1443994	+	873	119873073	-	Pisl_1583	-	aconitate hydratase
1554	 42.32	0	1444022..1444366	+	114	119873074	-	Pisl_1584	-	hypothetical protein
1555	 49.71	0	1444370..1445059	+	229	119873075	-	Pisl_1585	-	triosephosphate isomerase
1556	 39.86	-1	1445104..1445379	-	91	119873076	-	Pisl_1586	-	hypothetical protein
1557	 47.46	0	1445447..1445800	+	117	119873077	-	Pisl_1587	-	hypothetical protein
1558	 45.48	0	1445781..1446389	-	202	119873078	-	Pisl_1588	-	hypothetical protein
1559	 50.11	0	1446455..1446901	+	148	119873079	-	Pisl_1589	-	30S ribosomal protein S6e
1560	 34.98	-1	1446905..1447147	-	80	119873080	-	Pisl_1590	-	AsnC family transcriptional regulator
1561	 40.82	-1	1447510..1448310	+	266	119873081	-	Pisl_1591	-	beta-lactamase domain-containing protein
1562	 46.35	0	1448292..1449497	-	401	119873082	-	Pisl_1592	-	amidase
1563	 42.66	0	1449609..1450187	-	192	119873083	-	Pisl_1593	-	translin family protein
1564	 43.36	0	1450219..1451076	-	285	119873084	-	Pisl_1594	-	hypothetical protein
1565	 43.84	0	1451080..1451298	+	72	119873085	-	Pisl_1595	-	hypothetical protein
1566	 45.17	0	1451557..1452519	-	320	119873086	-	Pisl_1596	-	hypothetical protein
1567	 43.90	0	1452519..1452944	-	141	119873087	-	Pisl_1597	-	signal-transduction protein
1568	 46.11	0	1452975..1453154	-	59	119873088	-	Pisl_1598	-	hypothetical protein
1569	 43.10	0	1453426..1453845	-	139	119873089	-	Pisl_1599	-	hypothetical protein
1570	 46.69	0	1453962..1455728	+	588	119873090	-	Pisl_1600	-	translation initiation factor IF-2
1571	 44.59	0	1455751..1456905	+	384	119873091	-	Pisl_1601	-	iron-containing alcohol dehydrogenase
1572	 41.62	-1	1457013..1457507	-	164	119873092	-	Pisl_1602	-	Miro domain-containing protein
1573	 49.00	0	1457504..1458001	-	165	119873093	-	Pisl_1603	-	dual specificity protein phosphatase
1574	 42.88	0	1457992..1458714	-	240	119873094	-	Pisl_1604	-	binding-protein-dependent transport systems inner membrane component
1575	 46.90	0	1458711..1459403	-	230	119873095	-	Pisl_1605	-	ABC transporter related
1576	 43.29	0	1459400..1460293	-	297	119873096	-	Pisl_1606	-	NLPA lipoprotein
1577	 46.20	0	1460315..1461526	-	403	119873097	-	Pisl_1607	-	cytochrome c biogenesis protein, transmembrane region
1578	 50.40	0	1461558..1462178	+	206	119873098	-	Pisl_1608	-	beta-lactamase domain-containing protein
1579	 46.91	0	1462200..1462361	+	53	119873099	-	Pisl_1609	-	hypothetical protein
1580	 48.48	0	1462327..1462590	+	87	119873100	-	Pisl_1610	-	hypothetical protein
1581	 41.96	0	1462612..1462866	+	84	119873101	-	Pisl_1611	-	hypothetical protein
1582	 47.33	0	1462887..1463915	+	342	119873102	-	Pisl_1612	-	FAD dependent oxidoreductase
1583	 38.38	-1	1463908..1464105	+	65	119873103	-	Pisl_1613	-	CopG/Arc/MetJ family transcriptional regulator
1584	 45.63	0	1464136..1464948	+	270	119873104	-	Pisl_1614	-	hypothetical protein
1585	 44.82	0	1464986..1465342	-	118	119873105	-	Pisl_1615	-	twin arginine-targeting protein translocase
1586	 44.99	0	1465890..1466738	+	282	119873106	-	Pisl_1616	-	Sec-independent protein translocase TatC
1587	 47.31	0	1466723..1467559	-	278	119873107	-	Pisl_1617	-	hypothetical protein
1588	 51.37	0	1467593..1467958	+	121	119873108	-	Pisl_1618	-	hypothetical protein
1589	 46.71	0	1469104..1470000	+	298	119873109	-	Pisl_1620	-	carbamate kinase
1590	 44.55	0	1469985..1471250	-	421	119873110	-	Pisl_1621	-	histidyl-tRNA synthetase
1591	 46.51	0	1471247..1472293	-	348	119873111	-	Pisl_1622	-	saccharopine dehydrogenase
1592	 53.37	0	1472446..1473483	-	345	119873112	-	Pisl_1623	-	dolichyl-phosphate beta-D-mannosyltransferase
1593	 44.94	0	1474730..1475134	+	134	119873113	-	Pisl_1625	-	hypothetical protein
1594	 47.64	0	1475126..1475677	-	183	119873114	-	Pisl_1626	-	nucleoside-diphosphate kinase
48.97	MEAN

7.27	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.